Strain Fitness in Shewanella amazonensis SB2B around Sama_2623

Experiment: casaminos

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	casaminos
3,140,155	+				+0.1
3,140,317	-				-0.3
3,140,337	+				+0.3
3,140,337	+				+0.1
3,140,354	-				-0.1
3,140,354	-				+0.2
3,140,354	-				+0.4
3,140,397	+				-0.4
3,140,397	+				+0.3
3,140,397	+				-0.3
3,140,397	+				-1.0
3,140,397	+				-1.0
3,140,398	-				-0.2
3,140,398	-				-0.5
3,140,398	-				-0.3
3,140,398	-				+0.2
3,140,472	+		Sama_2622	0.24	-0.4
3,140,472	+		Sama_2622	0.24	+0.0
3,140,473	-		Sama_2622	0.25	+0.1
3,140,473	-		Sama_2622	0.25	+0.9
3,140,473	-		Sama_2622	0.25	+0.2
3,140,473	-		Sama_2622	0.25	-1.4
3,140,484	+		Sama_2622	0.27	+0.6
3,140,484	+		Sama_2622	0.27	+0.6
3,140,484	+		Sama_2622	0.27	+0.2
3,140,484	+		Sama_2622	0.27	-1.4
3,140,484	+		Sama_2622	0.27	+0.4
3,140,484	+		Sama_2622	0.27	-0.2
3,140,484	+		Sama_2622	0.27	-0.6
3,140,485	-		Sama_2622	0.27	+0.7
3,140,485	-		Sama_2622	0.27	+0.3
3,140,530	+		Sama_2622	0.38	-0.3
3,140,531	-		Sama_2622	0.38	+0.3
3,140,531	-		Sama_2622	0.38	-0.6
3,140,574	+		Sama_2622	0.48	-0.7
3,140,575	-		Sama_2622	0.48	+0.6
3,140,575	-		Sama_2622	0.48	-0.2
3,140,604	-		Sama_2622	0.55	-0.1
3,140,604	-		Sama_2622	0.55	+0.0
3,140,645	-		Sama_2622	0.64	-0.0
3,140,698	+		Sama_2622	0.76	-0.2
3,140,698	+		Sama_2622	0.76	+0.3
3,140,698	+		Sama_2622	0.76	-0.4
3,140,699	-		Sama_2622	0.77	-0.4
3,140,732	-		Sama_2622	0.84	-0.4
3,140,804	-				+0.2
3,140,804	-				+1.7
3,140,831	+				-0.7
3,140,856	+				-0.0
3,140,856	+				+0.5
3,140,856	+				+0.6
3,140,857	-				-0.1
3,140,857	-				+0.2
3,140,857	-				-0.4
3,140,857	-				-0.5
3,140,857	-				-0.0
3,140,857	-				-0.8
3,140,870	+				-2.0
3,140,871	-				-0.6
3,140,886	+				+0.1
3,140,886	+				+0.2
3,140,887	-				+0.6
3,140,887	-				-0.7
3,140,887	-				-0.2
3,140,888	+				-0.5
3,140,889	-				+0.7
3,140,889	-				-0.3
3,140,889	-				+0.2
3,140,889	-				+0.9
3,140,962	-				-0.3
3,140,988	+				-0.1
3,140,988	+				-1.6
3,140,988	+				+0.3
3,140,988	+				-1.4
3,140,989	-				-1.8
3,140,989	-				-0.0
3,140,989	-				+0.1
3,140,989	-				-0.6
3,140,995	-				+1.6
3,141,087	+				+0.5
3,141,087	+				-1.0
3,141,087	+				+0.0
3,141,087	+				-0.6
3,141,087	+				-1.2
3,141,088	-				-0.8
3,141,134	+				-1.4
3,141,135	-				+1.4
3,141,135	-				-0.8
3,141,217	-				-0.6
3,141,232	-		Sama_2623	0.10	+0.2
3,141,232	-		Sama_2623	0.10	-0.1
3,141,316	+		Sama_2623	0.15	-0.9
3,141,316	+		Sama_2623	0.15	-1.0
3,141,316	+		Sama_2623	0.15	-0.3
3,141,317	-		Sama_2623	0.15	+0.3
3,141,317	-		Sama_2623	0.15	+1.2
3,141,399	-		Sama_2623	0.19	-0.1
3,141,399	-		Sama_2623	0.19	+1.4
3,141,399	-		Sama_2623	0.19	-0.2
3,141,401	+		Sama_2623	0.19	-0.0
3,141,401	+		Sama_2623	0.19	+0.6
3,141,402	-		Sama_2623	0.19	-0.2
3,141,417	+		Sama_2623	0.20	-0.1
3,141,439	+		Sama_2623	0.21	+0.1
3,141,439	+		Sama_2623	0.21	-1.0
3,141,440	-		Sama_2623	0.21	+1.4
3,141,440	-		Sama_2623	0.21	-1.1
3,141,463	+		Sama_2623	0.22	-0.8
3,141,463	+		Sama_2623	0.22	-0.7
3,141,464	-		Sama_2623	0.23	-0.0
3,141,464	-		Sama_2623	0.23	-0.4
3,141,464	-		Sama_2623	0.23	+0.4
3,141,564	+		Sama_2623	0.28	-0.5
3,141,564	+		Sama_2623	0.28	-0.4
3,141,564	+		Sama_2623	0.28	+1.9
3,141,564	+		Sama_2623	0.28	-0.6
3,141,564	+		Sama_2623	0.28	-0.9
3,141,565	-		Sama_2623	0.28	-0.2
3,141,580	+		Sama_2623	0.29	-0.6
3,141,580	+		Sama_2623	0.29	+0.6
3,141,581	-		Sama_2623	0.29	-0.1
3,141,581	-		Sama_2623	0.29	+1.0
3,141,581	-		Sama_2623	0.29	+0.3
3,141,596	+		Sama_2623	0.30	+0.6
3,141,597	-		Sama_2623	0.30	-1.2
3,141,602	-		Sama_2623	0.30	-0.4
3,141,613	+		Sama_2623	0.30	+0.1
3,141,613	+		Sama_2623	0.30	-1.0
3,141,613	+		Sama_2623	0.30	-1.2
3,141,613	+		Sama_2623	0.30	+0.8
3,141,614	-		Sama_2623	0.31	+0.2
3,141,641	-		Sama_2623	0.32	+1.1
3,141,679	+		Sama_2623	0.34	-0.7
3,141,679	+		Sama_2623	0.34	-0.2
3,141,680	-		Sama_2623	0.34	-0.7
3,141,680	-		Sama_2623	0.34	+0.7
3,141,701	-		Sama_2623	0.35	+0.6
3,141,731	+		Sama_2623	0.37	-0.4
3,141,760	+		Sama_2623	0.38	-0.2
3,141,799	+		Sama_2623	0.40	+0.4
3,141,800	-		Sama_2623	0.40	-0.5
3,141,800	-		Sama_2623	0.40	+1.2
3,141,809	+		Sama_2623	0.41	+0.6
3,141,809	+		Sama_2623	0.41	+0.2
3,141,809	+		Sama_2623	0.41	+0.7
3,141,809	+		Sama_2623	0.41	+2.2
3,141,809	+		Sama_2623	0.41	-0.0
3,141,809	+		Sama_2623	0.41	-1.2
3,141,809	+		Sama_2623	0.41	-0.8
3,141,809	+		Sama_2623	0.41	+0.2
3,141,810	-		Sama_2623	0.41	+0.6
3,141,864	-		Sama_2623	0.44	+0.1
3,141,867	+		Sama_2623	0.44	+0.9
3,141,867	+		Sama_2623	0.44	+0.6
3,141,868	-		Sama_2623	0.44	+1.6
3,141,941	+		Sama_2623	0.48	+0.6
3,141,942	-		Sama_2623	0.48	-0.4
3,141,942	-		Sama_2623	0.48	+1.9
3,141,956	+		Sama_2623	0.49	+0.2
3,141,956	+		Sama_2623	0.49	-0.4
3,141,964	+		Sama_2623	0.49	+1.1
3,141,965	-		Sama_2623	0.49	+0.2
3,141,965	-		Sama_2623	0.49	-0.0
3,141,985	-		Sama_2623	0.50	+0.2
3,141,996	-		Sama_2623	0.51	+0.3
3,142,096	+		Sama_2623	0.56	+0.8
3,142,096	+		Sama_2623	0.56	+1.6
3,142,097	-		Sama_2623	0.56	-0.7
3,142,117	+		Sama_2623	0.57	+1.1
3,142,118	-		Sama_2623	0.57	+0.9
3,142,150	+		Sama_2623	0.59	+0.2
3,142,151	-		Sama_2623	0.59	-0.6
3,142,152	+		Sama_2623	0.59	+0.6
3,142,153	-		Sama_2623	0.59	+0.3
3,142,163	+		Sama_2623	0.60	-0.4
3,142,163	+		Sama_2623	0.60	+1.9
3,142,279	+		Sama_2623	0.66	-0.4
3,142,279	+		Sama_2623	0.66	-0.5
3,142,280	-		Sama_2623	0.66	+1.1
3,142,280	-		Sama_2623	0.66	-2.0
3,142,323	+		Sama_2623	0.68	-0.1
3,142,381	-		Sama_2623	0.71	+0.8
3,142,390	+		Sama_2623	0.72	+0.2
3,142,390	+		Sama_2623	0.72	-1.6
3,142,391	-		Sama_2623	0.72	-0.0
3,142,391	-		Sama_2623	0.72	+0.7
3,142,411	-		Sama_2623	0.73	-0.4
3,142,474	+		Sama_2623	0.76	-0.4
3,142,474	+		Sama_2623	0.76	+1.6
3,142,475	-		Sama_2623	0.76	-0.5
3,142,475	-		Sama_2623	0.76	-0.2
3,142,475	-		Sama_2623	0.76	+1.0
3,142,475	-		Sama_2623	0.76	-1.0
3,142,475	-		Sama_2623	0.76	+0.2
3,142,475	-		Sama_2623	0.76	-1.3
3,142,475	-		Sama_2623	0.76	-0.0
3,142,475	-		Sama_2623	0.76	-0.4
3,142,593	+		Sama_2623	0.83	+0.8
3,142,593	+		Sama_2623	0.83	+0.1
3,142,593	+		Sama_2623	0.83	+0.2
3,142,594	-		Sama_2623	0.83	+1.8
3,142,594	-		Sama_2623	0.83	+0.1
3,142,639	-		Sama_2623	0.85	+0.6
3,142,745	+				+0.2
3,142,745	+				-0.0
3,142,819	-				-1.0
3,142,819	-				-0.1
3,142,830	+				+0.2
3,142,830	+				-0.8
3,142,873	+				+0.4
3,142,918	+				+0.1
3,142,919	-				-2.0
3,142,959	-				+0.1
3,142,959	-				-0.1
3,142,959	-				-0.4
3,142,959	-				-0.2
3,142,977	-				-1.1
3,143,086	+		Sama_2624	0.21	-2.0
3,143,086	+		Sama_2624	0.21	-0.1
3,143,087	-		Sama_2624	0.21	+0.1
3,143,087	-		Sama_2624	0.21	-0.4
3,143,113	-		Sama_2624	0.24	+1.4
3,143,135	+		Sama_2624	0.27	-0.2
3,143,136	-		Sama_2624	0.27	-0.0
3,143,138	+		Sama_2624	0.27	+1.6
3,143,139	-		Sama_2624	0.27	-0.2
3,143,154	+		Sama_2624	0.29	+0.3
3,143,154	+		Sama_2624	0.29	-0.4
3,143,155	-		Sama_2624	0.29	-0.1
3,143,155	-		Sama_2624	0.29	+0.6
3,143,160	-		Sama_2624	0.30	-0.4
3,143,160	-		Sama_2624	0.30	+0.6
3,143,189	-		Sama_2624	0.33	+0.7
3,143,189	-		Sama_2624	0.33	+0.2
3,143,233	+		Sama_2624	0.39	-0.8
3,143,241	+		Sama_2624	0.40	+0.4
3,143,242	-		Sama_2624	0.40	+1.0
3,143,267	+		Sama_2624	0.43	-0.2
3,143,268	-		Sama_2624	0.43	-0.7
3,143,268	-		Sama_2624	0.43	-0.3
3,143,299	+		Sama_2624	0.47	-0.7
3,143,300	-		Sama_2624	0.47	+1.2
3,143,300	-		Sama_2624	0.47	-0.9
3,143,301	+		Sama_2624	0.47	+0.2
3,143,301	+		Sama_2624	0.47	+0.4
3,143,301	+		Sama_2624	0.47	-0.8
3,143,301	+		Sama_2624	0.47	+1.6
3,143,301	+		Sama_2624	0.47	+0.6
3,143,301	+		Sama_2624	0.47	-0.1
3,143,302	-		Sama_2624	0.47	+1.6
3,143,355	-		Sama_2624	0.54	+0.7
3,143,371	+		Sama_2624	0.56	-0.5
3,143,372	-		Sama_2624	0.56	-1.1
3,143,372	-		Sama_2624	0.56	+0.6
3,143,378	+		Sama_2624	0.56	-0.2
3,143,421	-		Sama_2624	0.62	-0.6
3,143,436	-		Sama_2624	0.64	+1.0
3,143,483	+		Sama_2624	0.69	+1.2
3,143,483	+		Sama_2624	0.69	-0.1
3,143,484	-		Sama_2624	0.69	-0.1
3,143,484	-		Sama_2624	0.69	-1.0
3,143,484	-		Sama_2624	0.69	-1.8
3,143,484	-		Sama_2624	0.69	-0.2
3,143,484	-		Sama_2624	0.69	-0.1
3,143,484	-		Sama_2624	0.69	-0.4
3,143,484	-		Sama_2624	0.69	-0.5
3,143,484	-		Sama_2624	0.69	-0.7
3,143,484	-		Sama_2624	0.69	+0.8
3,143,485	+		Sama_2624	0.70	+0.1
3,143,485	+		Sama_2624	0.70	-0.1
3,143,485	+		Sama_2624	0.70	+0.1
3,143,485	+		Sama_2624	0.70	-0.6
3,143,485	+		Sama_2624	0.70	-1.3
3,143,486	-		Sama_2624	0.70	+0.2
3,143,486	-		Sama_2624	0.70	-1.4
3,143,486	-		Sama_2624	0.70	+0.4
3,143,486	-		Sama_2624	0.70	-0.4
3,143,486	-		Sama_2624	0.70	-1.3
3,143,486	-		Sama_2624	0.70	+1.1
3,143,486	-		Sama_2624	0.70	+0.6
3,143,511	+		Sama_2624	0.73	+0.7
3,143,511	+		Sama_2624	0.73	-0.3
3,143,511	+		Sama_2624	0.73	+0.7
3,143,511	+		Sama_2624	0.73	-0.2
3,143,512	-		Sama_2624	0.73	+0.1
3,143,512	-		Sama_2624	0.73	-0.2
3,143,512	-		Sama_2624	0.73	+1.9
3,143,512	-		Sama_2624	0.73	+0.5
3,143,512	-		Sama_2624	0.73	+0.1
3,143,512	-		Sama_2624	0.73	+0.1
3,143,512	-		Sama_2624	0.73	+0.6
3,143,512	-		Sama_2624	0.73	+0.4
3,143,512	-		Sama_2624	0.73	-1.1
3,143,512	-		Sama_2624	0.73	-0.6
3,143,512	-		Sama_2624	0.73	+0.4
3,143,541	+		Sama_2624	0.76	+0.3
3,143,542	-		Sama_2624	0.77	+1.2
3,143,542	-		Sama_2624	0.77	+0.2
3,143,542	-		Sama_2624	0.77	+0.2
3,143,542	-		Sama_2624	0.77	+0.4
3,143,567	-		Sama_2624	0.80	+1.1
3,143,580	-		Sama_2624	0.81	+0.3
3,143,594	-		Sama_2624	0.83	+1.2
3,143,598	+		Sama_2624	0.83	+0.9
3,143,599	-		Sama_2624	0.84	-1.2
3,143,599	-		Sama_2624	0.84	-0.3
3,143,599	-		Sama_2624	0.84	+1.0
3,143,715	-				-0.9
3,143,715	-				-0.3
3,143,715	-				+0.5
3,143,715	-				+0.8
3,143,715	-				+0.6
3,143,715	-				+0.6
3,143,715	-				-0.1
3,143,759	-				+0.3
3,143,770	-				+1.8
3,143,829	+				-1.4
3,143,829	+				-0.0
3,143,829	+				-0.2
3,143,829	+				+1.6
3,143,830	-				-0.4
3,143,830	-				-0.1
3,143,830	-				-0.7
3,143,858	+				-0.3