Experiment: Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SOA0120 and SOA0121 overlap by 25 nucleotides SOA0121 and SOA0122 are separated by 194 nucleotides SOA0122 and SOA0123 are separated by 223 nucleotides SOA0123 and SO_A0124 are separated by 58 nucleotides
SOA0120: SOA0120 - ISSod12, transposase (NCBI ptt file), at 107,889 to 108,812
SOA0120
SOA0121: SOA0121 - hypothetical protein (NCBI ptt file), at 108,788 to 108,913
SOA0121
SOA0122: SOA0122 - conserved hypothetical protein (NCBI ptt file), at 109,108 to 109,497
SOA0122
SOA0123: SOA0123 - conserved domain protein (NCBI ptt file), at 109,721 to 109,930
SOA0123
SO_A0124: SO_A0124 - no description, at 109,989 to 110,800
_A0124
Position (kb) 109
110 Strain fitness (log2 ratio) -2
-1
0
1
2 at 108.861 kb on + strand, within SOA0121 at 108.888 kb on + strand, within SOA0121 at 109.025 kb on + strand at 109.027 kb on + strand at 109.028 kb on + strand at 109.028 kb on + strand at 109.036 kb on - strand at 109.036 kb on - strand at 109.052 kb on - strand at 109.059 kb on - strand at 109.146 kb on + strand at 109.146 kb on + strand at 109.146 kb on + strand at 109.146 kb on + strand at 109.149 kb on - strand, within SOA0122 at 109.151 kb on + strand, within SOA0122 at 109.154 kb on + strand, within SOA0122 at 109.154 kb on - strand, within SOA0122 at 109.154 kb on - strand, within SOA0122 at 109.154 kb on - strand, within SOA0122 at 109.154 kb on - strand, within SOA0122 at 109.154 kb on - strand, within SOA0122 at 109.154 kb on - strand, within SOA0122 at 109.154 kb on - strand, within SOA0122 at 109.154 kb on - strand, within SOA0122 at 109.156 kb on + strand, within SOA0122 at 109.156 kb on + strand, within SOA0122 at 109.156 kb on + strand, within SOA0122 at 109.156 kb on + strand, within SOA0122 at 109.156 kb on + strand, within SOA0122 at 109.156 kb on + strand, within SOA0122 at 109.156 kb on + strand, within SOA0122 at 109.156 kb on + strand, within SOA0122 at 109.156 kb on + strand, within SOA0122 at 109.156 kb on + strand, within SOA0122 at 109.163 kb on - strand, within SOA0122 at 109.163 kb on - strand, within SOA0122 at 109.163 kb on - strand, within SOA0122 at 109.163 kb on - strand, within SOA0122 at 109.163 kb on - strand, within SOA0122 at 109.163 kb on - strand, within SOA0122 at 109.163 kb on - strand, within SOA0122 at 109.163 kb on - strand, within SOA0122 at 109.163 kb on - strand, within SOA0122 at 109.163 kb on - strand, within SOA0122 at 109.164 kb on - strand, within SOA0122 at 109.164 kb on - strand, within SOA0122 at 109.165 kb on - strand, within SOA0122 at 109.174 kb on + strand at 109.190 kb on - strand, within SOA0122 at 109.197 kb on + strand, within SOA0122 at 109.197 kb on + strand, within SOA0122 at 109.198 kb on + strand, within SOA0122 at 109.204 kb on + strand, within SOA0122 at 109.204 kb on + strand, within SOA0122 at 109.205 kb on - strand, within SOA0122 at 109.205 kb on - strand, within SOA0122 at 109.205 kb on - strand, within SOA0122 at 109.205 kb on - strand, within SOA0122 at 109.205 kb on - strand, within SOA0122 at 109.205 kb on - strand, within SOA0122 at 109.205 kb on - strand, within SOA0122 at 109.205 kb on - strand, within SOA0122 at 109.207 kb on - strand, within SOA0122 at 109.207 kb on - strand, within SOA0122 at 109.207 kb on - strand, within SOA0122 at 109.207 kb on - strand, within SOA0122 at 109.207 kb on - strand, within SOA0122 at 109.207 kb on - strand, within SOA0122 at 109.223 kb on + strand, within SOA0122 at 109.223 kb on + strand, within SOA0122 at 109.223 kb on + strand, within SOA0122 at 109.223 kb on + strand, within SOA0122 at 109.223 kb on + strand, within SOA0122 at 109.230 kb on - strand, within SOA0122 at 109.231 kb on - strand, within SOA0122 at 109.231 kb on - strand, within SOA0122 at 109.237 kb on + strand, within SOA0122 at 109.239 kb on + strand, within SOA0122 at 109.245 kb on - strand, within SOA0122 at 109.250 kb on + strand, within SOA0122 at 109.252 kb on + strand, within SOA0122 at 109.252 kb on + strand, within SOA0122 at 109.257 kb on - strand, within SOA0122 at 109.258 kb on + strand, within SOA0122 at 109.258 kb on + strand, within SOA0122 at 109.258 kb on - strand, within SOA0122 at 109.258 kb on - strand, within SOA0122 at 109.260 kb on - strand, within SOA0122 at 109.260 kb on - strand, within SOA0122 at 109.267 kb on + strand, within SOA0122 at 109.268 kb on + strand, within SOA0122 at 109.268 kb on + strand, within SOA0122 at 109.274 kb on - strand, within SOA0122 at 109.276 kb on - strand, within SOA0122 at 109.276 kb on - strand, within SOA0122 at 109.281 kb on + strand, within SOA0122 at 109.281 kb on + strand, within SOA0122 at 109.289 kb on - strand, within SOA0122 at 109.289 kb on - strand, within SOA0122 at 109.291 kb on - strand, within SOA0122 at 109.300 kb on + strand, within SOA0122 at 109.309 kb on - strand, within SOA0122 at 109.309 kb on - strand, within SOA0122 at 109.347 kb on + strand, within SOA0122 at 109.354 kb on + strand, within SOA0122 at 109.354 kb on + strand, within SOA0122 at 109.362 kb on - strand, within SOA0122 at 109.365 kb on + strand, within SOA0122 at 109.366 kb on - strand, within SOA0122 at 109.373 kb on - strand, within SOA0122 at 109.373 kb on - strand, within SOA0122 at 109.373 kb on - strand, within SOA0122 at 109.373 kb on - strand, within SOA0122 at 109.373 kb on - strand, within SOA0122 at 109.394 kb on + strand, within SOA0122 at 109.394 kb on + strand, within SOA0122 at 109.394 kb on + strand, within SOA0122 at 109.400 kb on + strand, within SOA0122 at 109.400 kb on + strand, within SOA0122 at 109.400 kb on + strand, within SOA0122 at 109.400 kb on - strand, within SOA0122 at 109.400 kb on - strand, within SOA0122 at 109.400 kb on - strand, within SOA0122 at 109.400 kb on - strand, within SOA0122 at 109.402 kb on - strand, within SOA0122 at 109.402 kb on - strand, within SOA0122 at 109.406 kb on + strand, within SOA0122 at 109.408 kb on - strand, within SOA0122 at 109.408 kb on - strand, within SOA0122 at 109.408 kb on - strand, within SOA0122 at 109.412 kb on + strand, within SOA0122 at 109.412 kb on + strand, within SOA0122 at 109.419 kb on + strand, within SOA0122 at 109.419 kb on + strand, within SOA0122 at 109.420 kb on - strand, within SOA0122 at 109.427 kb on - strand, within SOA0122 at 109.427 kb on - strand, within SOA0122 at 109.451 kb on + strand, within SOA0122 at 109.451 kb on + strand, within SOA0122 at 109.451 kb on + strand, within SOA0122 at 109.451 kb on + strand, within SOA0122 at 109.454 kb on - strand, within SOA0122 at 109.459 kb on - strand at 109.459 kb on - strand at 109.459 kb on - strand at 109.568 kb on + strand at 109.568 kb on + strand at 109.568 kb on + strand at 109.571 kb on + strand at 109.571 kb on + strand at 109.576 kb on - strand at 109.576 kb on - strand at 109.576 kb on - strand at 109.576 kb on - strand at 109.576 kb on - strand at 109.576 kb on - strand at 109.578 kb on + strand at 109.578 kb on + strand at 109.578 kb on + strand at 109.584 kb on + strand at 109.586 kb on - strand at 109.593 kb on + strand at 109.593 kb on + strand at 109.593 kb on + strand at 109.601 kb on - strand at 109.601 kb on - strand at 109.601 kb on - strand at 109.601 kb on - strand at 109.601 kb on - strand at 109.601 kb on - strand at 109.609 kb on + strand at 109.618 kb on + strand at 109.620 kb on + strand at 109.620 kb on + strand at 109.620 kb on + strand at 109.620 kb on + strand at 109.628 kb on - strand at 109.628 kb on - strand at 109.628 kb on - strand at 109.628 kb on - strand at 109.628 kb on - strand at 109.628 kb on - strand at 109.628 kb on - strand at 109.628 kb on - strand at 109.628 kb on - strand at 109.635 kb on + strand at 109.643 kb on - strand at 109.687 kb on - strand at 109.691 kb on + strand at 109.691 kb on + strand at 109.691 kb on + strand at 109.694 kb on - strand at 109.699 kb on - strand at 109.699 kb on - strand at 109.699 kb on - strand at 109.714 kb on + strand at 109.726 kb on + strand at 109.726 kb on + strand at 109.732 kb on - strand at 109.734 kb on - strand at 109.757 kb on + strand, within SOA0123 at 109.765 kb on - strand, within SOA0123 at 109.836 kb on - strand, within SOA0123 at 109.840 kb on + strand, within SOA0123 at 109.846 kb on + strand, within SOA0123 at 109.846 kb on + strand, within SOA0123 at 109.848 kb on - strand, within SOA0123 at 109.848 kb on - strand, within SOA0123 at 109.854 kb on - strand, within SOA0123 at 109.991 kb on + strand at 109.991 kb on + strand at 110.060 kb on - strand at 110.089 kb on + strand, within SO_A0124 at 110.123 kb on + strand, within SO_A0124 at 110.141 kb on - strand, within SO_A0124 at 110.225 kb on - strand, within SO_A0124 at 110.271 kb on + strand, within SO_A0124 at 110.272 kb on + strand, within SO_A0124 at 110.279 kb on - strand, within SO_A0124 at 110.279 kb on - strand, within SO_A0124 at 110.280 kb on + strand, within SO_A0124 at 110.281 kb on - strand, within SO_A0124 at 110.304 kb on - strand, within SO_A0124 at 110.307 kb on - strand, within SO_A0124 at 110.325 kb on - strand, within SO_A0124 at 110.330 kb on + strand, within SO_A0124 at 110.330 kb on + strand, within SO_A0124 at 110.338 kb on - strand, within SO_A0124 at 110.363 kb on - strand, within SO_A0124 at 110.370 kb on + strand, within SO_A0124 at 110.380 kb on - strand, within SO_A0124 at 110.380 kb on - strand, within SO_A0124 at 110.382 kb on + strand, within SO_A0124 at 110.396 kb on + strand, within SO_A0124 at 110.418 kb on + strand, within SO_A0124 at 110.419 kb on - strand, within SO_A0124 at 110.426 kb on - strand, within SO_A0124 at 110.445 kb on + strand, within SO_A0124 at 110.508 kb on + strand, within SO_A0124 at 110.516 kb on - strand, within SO_A0124 at 110.597 kb on - strand, within SO_A0124 at 110.597 kb on - strand, within SO_A0124 at 110.597 kb on - strand, within SO_A0124 at 110.610 kb on + strand, within SO_A0124 at 110.618 kb on - strand, within SO_A0124 at 110.626 kb on - strand, within SO_A0124 at 110.648 kb on + strand, within SO_A0124 at 110.657 kb on + strand, within SO_A0124 at 110.658 kb on - strand, within SO_A0124 at 110.663 kb on + strand, within SO_A0124 at 110.663 kb on + strand, within SO_A0124 at 110.673 kb on + strand, within SO_A0124 at 110.685 kb on + strand, within SO_A0124 at 110.685 kb on + strand, within SO_A0124 at 110.685 kb on + strand, within SO_A0124 at 110.685 kb on + strand, within SO_A0124 at 110.685 kb on + strand, within SO_A0124 at 110.685 kb on + strand at 110.685 kb on + strand, within SO_A0124 at 110.693 kb on - strand, within SO_A0124 at 110.693 kb on - strand, within SO_A0124 at 110.693 kb on - strand, within SO_A0124 at 110.756 kb on + strand at 110.764 kb on - strand at 110.812 kb on + strand at 110.840 kb on + strand at 110.847 kb on + strand at 110.904 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml remove 108,861 + SOA0121 0.58 -0.5 108,888 + SOA0121 0.79 +0.3 109,025 + -0.0 109,027 + -0.2 109,028 + +0.5 109,028 + -0.0 109,036 - +0.3 109,036 - +0.1 109,052 - +0.7 109,059 - -0.2 109,146 + +0.4 109,146 + -0.1 109,146 + +0.1 109,146 + -0.4 109,149 - SOA0122 0.11 +0.3 109,151 + SOA0122 0.11 +0.9 109,154 + SOA0122 0.12 -0.1 109,154 - SOA0122 0.12 +0.2 109,154 - SOA0122 0.12 -0.5 109,154 - SOA0122 0.12 +0.5 109,154 - SOA0122 0.12 -0.4 109,154 - SOA0122 0.12 -0.1 109,154 - SOA0122 0.12 +0.5 109,154 - SOA0122 0.12 -0.1 109,154 - SOA0122 0.12 -0.3 109,156 + SOA0122 0.12 -0.3 109,156 + SOA0122 0.12 -0.4 109,156 + SOA0122 0.12 -0.4 109,156 + SOA0122 0.12 +0.4 109,156 + SOA0122 0.12 -0.0 109,156 + SOA0122 0.12 -0.3 109,156 + SOA0122 0.12 -0.1 109,156 + SOA0122 0.12 +0.5 109,156 + SOA0122 0.12 +0.2 109,156 + SOA0122 0.12 +0.0 109,163 - SOA0122 0.14 -1.1 109,163 - SOA0122 0.14 +0.0 109,163 - SOA0122 0.14 +0.0 109,163 - SOA0122 0.14 +0.5 109,163 - SOA0122 0.14 -0.3 109,163 - SOA0122 0.14 +0.0 109,163 - SOA0122 0.14 +0.5 109,163 - SOA0122 0.14 -0.1 109,163 - SOA0122 0.14 +0.0 109,163 - SOA0122 0.14 +0.4 109,164 - SOA0122 0.14 +0.2 109,164 - SOA0122 0.14 +0.1 109,165 - SOA0122 0.15 +0.1 109,174 + +1.3 109,190 - SOA0122 0.21 +0.2 109,197 + SOA0122 0.23 +0.1 109,197 + SOA0122 0.23 -0.0 109,198 + SOA0122 0.23 -0.5 109,204 + SOA0122 0.25 +0.1 109,204 + SOA0122 0.25 -0.0 109,205 - SOA0122 0.25 +0.1 109,205 - SOA0122 0.25 -0.2 109,205 - SOA0122 0.25 +0.2 109,205 - SOA0122 0.25 -0.0 109,205 - SOA0122 0.25 -0.6 109,205 - SOA0122 0.25 +0.1 109,205 - SOA0122 0.25 +0.1 109,205 - SOA0122 0.25 +1.5 109,207 - SOA0122 0.25 +0.2 109,207 - SOA0122 0.25 -0.4 109,207 - SOA0122 0.25 +0.6 109,207 - SOA0122 0.25 +0.3 109,207 - SOA0122 0.25 +0.8 109,207 - SOA0122 0.25 -1.2 109,223 + SOA0122 0.29 -0.2 109,223 + SOA0122 0.29 -0.3 109,223 + SOA0122 0.29 +0.2 109,223 + SOA0122 0.29 -0.0 109,223 + SOA0122 0.29 -0.6 109,230 - SOA0122 0.31 +0.3 109,231 - SOA0122 0.32 -0.5 109,231 - SOA0122 0.32 +0.6 109,237 + SOA0122 0.33 +0.4 109,239 + SOA0122 0.34 -0.5 109,245 - SOA0122 0.35 +0.4 109,250 + SOA0122 0.36 -0.2 109,252 + SOA0122 0.37 +0.4 109,252 + SOA0122 0.37 -0.4 109,257 - SOA0122 0.38 +1.1 109,258 + SOA0122 0.38 -0.0 109,258 + SOA0122 0.38 +0.2 109,258 - SOA0122 0.38 -0.1 109,258 - SOA0122 0.38 +0.3 109,260 - SOA0122 0.39 -0.1 109,260 - SOA0122 0.39 -0.1 109,267 + SOA0122 0.41 +0.3 109,268 + SOA0122 0.41 +0.6 109,268 + SOA0122 0.41 -0.1 109,274 - SOA0122 0.43 +0.2 109,276 - SOA0122 0.43 +0.2 109,276 - SOA0122 0.43 -0.1 109,281 + SOA0122 0.44 +2.5 109,281 + SOA0122 0.44 -0.2 109,289 - SOA0122 0.46 +0.3 109,289 - SOA0122 0.46 +0.4 109,291 - SOA0122 0.47 -0.5 109,300 + SOA0122 0.49 +0.7 109,309 - SOA0122 0.52 -0.2 109,309 - SOA0122 0.52 -0.4 109,347 + SOA0122 0.61 -0.5 109,354 + SOA0122 0.63 -0.1 109,354 + SOA0122 0.63 +0.5 109,362 - SOA0122 0.65 +0.1 109,365 + SOA0122 0.66 +0.6 109,366 - SOA0122 0.66 +0.1 109,373 - SOA0122 0.68 -0.1 109,373 - SOA0122 0.68 +1.2 109,373 - SOA0122 0.68 +0.0 109,373 - SOA0122 0.68 -0.2 109,373 - SOA0122 0.68 +0.0 109,394 + SOA0122 0.73 +0.3 109,394 + SOA0122 0.73 +0.0 109,394 + SOA0122 0.73 +0.1 109,400 + SOA0122 0.75 +0.5 109,400 + SOA0122 0.75 -0.6 109,400 + SOA0122 0.75 -0.0 109,400 - SOA0122 0.75 +1.0 109,400 - SOA0122 0.75 +0.1 109,400 - SOA0122 0.75 -0.4 109,400 - SOA0122 0.75 +0.5 109,402 - SOA0122 0.75 +0.4 109,402 - SOA0122 0.75 -0.6 109,406 + SOA0122 0.76 +0.5 109,408 - SOA0122 0.77 +0.2 109,408 - SOA0122 0.77 +0.3 109,408 - SOA0122 0.77 +0.4 109,412 + SOA0122 0.78 +0.9 109,412 + SOA0122 0.78 +0.6 109,419 + SOA0122 0.80 +0.2 109,419 + SOA0122 0.80 -0.0 109,420 - SOA0122 0.80 +0.1 109,427 - SOA0122 0.82 +0.4 109,427 - SOA0122 0.82 -0.1 109,451 + SOA0122 0.88 +0.5 109,451 + SOA0122 0.88 +0.6 109,451 + SOA0122 0.88 +0.2 109,451 + SOA0122 0.88 +0.6 109,454 - SOA0122 0.89 +0.4 109,459 - -0.1 109,459 - +0.3 109,459 - +0.3 109,568 + +0.4 109,568 + +0.2 109,568 + +0.4 109,571 + -0.9 109,571 + +0.1 109,576 - +0.4 109,576 - -0.2 109,576 - +0.2 109,576 - -0.2 109,576 - -0.1 109,576 - -0.2 109,578 + -0.1 109,578 + -0.1 109,578 + +0.3 109,584 + +0.1 109,586 - -0.5 109,593 + -0.5 109,593 + -0.0 109,593 + +0.3 109,601 - +0.6 109,601 - -0.4 109,601 - +0.1 109,601 - +0.0 109,601 - +0.7 109,601 - +0.4 109,609 + +0.1 109,618 + +2.3 109,620 + +0.9 109,620 + +0.7 109,620 + +0.2 109,620 + +0.3 109,628 - +1.1 109,628 - -0.0 109,628 - +0.2 109,628 - -0.2 109,628 - -0.1 109,628 - -0.3 109,628 - +0.1 109,628 - -0.0 109,628 - -0.2 109,635 + -1.1 109,643 - -0.0 109,687 - -0.5 109,691 + -0.2 109,691 + -0.5 109,691 + +0.9 109,694 - -0.7 109,699 - +0.4 109,699 - +0.8 109,699 - +0.3 109,714 + +0.1 109,726 + -0.5 109,726 + -0.3 109,732 - +0.4 109,734 - +0.2 109,757 + SOA0123 0.17 -0.8 109,765 - SOA0123 0.21 +0.4 109,836 - SOA0123 0.55 -1.1 109,840 + SOA0123 0.57 -0.5 109,846 + SOA0123 0.60 -0.2 109,846 + SOA0123 0.60 -0.9 109,848 - SOA0123 0.60 -0.3 109,848 - SOA0123 0.60 -0.5 109,854 - SOA0123 0.63 +0.1 109,991 + -0.3 109,991 + +0.9 110,060 - +0.1 110,089 + SO_A0124 0.12 -0.3 110,123 + SO_A0124 0.17 +0.7 110,141 - SO_A0124 0.19 -0.4 110,225 - SO_A0124 0.29 -1.3 110,271 + SO_A0124 0.35 -0.1 110,272 + SO_A0124 0.35 +0.5 110,279 - SO_A0124 0.36 +0.2 110,279 - SO_A0124 0.36 +0.6 110,280 + SO_A0124 0.36 +0.0 110,281 - SO_A0124 0.36 +0.2 110,304 - SO_A0124 0.39 +0.3 110,307 - SO_A0124 0.39 +0.3 110,325 - SO_A0124 0.41 -0.9 110,330 + SO_A0124 0.42 +0.3 110,330 + SO_A0124 0.42 +0.1 110,338 - SO_A0124 0.43 +0.0 110,363 - SO_A0124 0.46 +0.1 110,370 + SO_A0124 0.47 +0.4 110,380 - SO_A0124 0.48 -0.9 110,380 - SO_A0124 0.48 +0.0 110,382 + SO_A0124 0.48 -0.5 110,396 + SO_A0124 0.50 +0.5 110,418 + SO_A0124 0.53 -0.2 110,419 - SO_A0124 0.53 -0.0 110,426 - SO_A0124 0.54 +0.2 110,445 + SO_A0124 0.56 -0.3 110,508 + SO_A0124 0.64 -0.3 110,516 - SO_A0124 0.65 +0.4 110,597 - SO_A0124 0.75 -0.3 110,597 - SO_A0124 0.75 +0.1 110,597 - SO_A0124 0.75 -1.9 110,610 + SO_A0124 0.76 -0.4 110,618 - SO_A0124 0.77 +1.1 110,626 - SO_A0124 0.78 +0.8 110,648 + SO_A0124 0.81 +0.0 110,657 + SO_A0124 0.82 -0.6 110,658 - SO_A0124 0.82 +0.1 110,663 + SO_A0124 0.83 +0.0 110,663 + SO_A0124 0.83 +0.2 110,673 + SO_A0124 0.84 +0.7 110,685 + SO_A0124 0.86 +0.1 110,685 + SO_A0124 0.86 +0.7 110,685 + SO_A0124 0.86 -0.0 110,685 + SO_A0124 0.86 +0.9 110,685 + SO_A0124 0.86 -0.0 110,685 + -1.3 110,685 + SO_A0124 0.86 +0.1 110,693 - SO_A0124 0.87 +0.1 110,693 - SO_A0124 0.87 -0.1 110,693 - SO_A0124 0.87 +0.5 110,756 + +0.5 110,764 - -1.4 110,812 + -0.1 110,840 + -0.6 110,847 + -0.6 110,904 + +0.8
Or see this region's nucleotide sequence