Experiment: Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0411 and SO0412 are separated by 60 nucleotides SO0412 and SO0413 overlap by 8 nucleotides SO0413 and pilD are separated by 153 nucleotides
SO0411: SO0411 - conserved hypothetical protein (NCBI ptt file), at 427,225 to 427,434
SO0411
SO0412: SO0412 - conserved hypothetical protein (NCBI ptt file), at 427,495 to 428,229
SO0412
SO0413: SO0413 - kinase, putative (NCBI ptt file), at 428,222 to 428,839
SO0413
SO0414: pilD - type 4 prepilin-like proteins leader peptide processing enzyme (NCBI ptt file), at 428,993 to 429,919
pilD
Position (kb) 428
429 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 427.248 kb on - strand, within SO0411 at 427.263 kb on + strand, within SO0411 at 427.271 kb on - strand, within SO0411 at 427.278 kb on + strand, within SO0411 at 427.431 kb on + strand at 427.436 kb on + strand at 427.484 kb on + strand at 427.513 kb on + strand at 427.535 kb on + strand at 427.535 kb on + strand at 427.625 kb on + strand, within SO0412 at 427.625 kb on + strand, within SO0412 at 427.647 kb on + strand, within SO0412 at 427.647 kb on + strand, within SO0412 at 427.745 kb on - strand, within SO0412 at 427.747 kb on - strand, within SO0412 at 427.962 kb on - strand, within SO0412 at 427.963 kb on - strand, within SO0412 at 428.053 kb on - strand, within SO0412 at 428.067 kb on + strand, within SO0412 at 428.094 kb on - strand, within SO0412 at 428.144 kb on + strand, within SO0412 at 428.147 kb on - strand, within SO0412 at 428.152 kb on - strand, within SO0412 at 428.152 kb on - strand, within SO0412 at 428.198 kb on + strand at 428.198 kb on + strand at 428.225 kb on + strand at 428.898 kb on - strand at 428.987 kb on - strand at 428.988 kb on - strand at 429.070 kb on + strand at 429.105 kb on - strand, within pilD at 429.337 kb on + strand, within pilD at 429.355 kb on + strand, within pilD at 429.363 kb on - strand, within pilD at 429.511 kb on - strand, within pilD at 429.588 kb on - strand, within pilD at 429.588 kb on - strand, within pilD at 429.598 kb on - strand, within pilD at 429.688 kb on - strand, within pilD
Per-strain Table
Position Strand Gene LocusTag Fraction Benzalkonium Chloride 0.002 mg/ml remove 427,248 - SO0411 0.11 -0.3 427,263 + SO0411 0.18 -0.3 427,271 - SO0411 0.22 -0.4 427,278 + SO0411 0.25 +0.3 427,431 + +0.7 427,436 + -1.0 427,484 + -0.1 427,513 + +0.1 427,535 + +0.7 427,535 + +1.3 427,625 + SO0412 0.18 -0.8 427,625 + SO0412 0.18 +0.2 427,647 + SO0412 0.21 -0.0 427,647 + SO0412 0.21 -0.6 427,745 - SO0412 0.34 +0.1 427,747 - SO0412 0.34 -0.6 427,962 - SO0412 0.64 -0.5 427,963 - SO0412 0.64 -0.0 428,053 - SO0412 0.76 -0.0 428,067 + SO0412 0.78 +0.3 428,094 - SO0412 0.81 +0.2 428,144 + SO0412 0.88 +0.1 428,147 - SO0412 0.89 +0.4 428,152 - SO0412 0.89 -0.1 428,152 - SO0412 0.89 -0.3 428,198 + -0.5 428,198 + -0.4 428,225 + +0.3 428,898 - +0.0 428,987 - +0.1 428,988 - -0.9 429,070 + -2.6 429,105 - pilD SO0414 0.12 -3.8 429,337 + pilD SO0414 0.37 -1.4 429,355 + pilD SO0414 0.39 -2.3 429,363 - pilD SO0414 0.40 -1.3 429,511 - pilD SO0414 0.56 -2.7 429,588 - pilD SO0414 0.64 -3.1 429,588 - pilD SO0414 0.64 -2.3 429,598 - pilD SO0414 0.65 -0.5 429,688 - pilD SO0414 0.75 -2.5
Or see this region's nucleotide sequence