Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08450 and PGA1_c08460 overlap by 8 nucleotides PGA1_c08460 and PGA1_c08470 are separated by 17 nucleotides PGA1_c08470 and PGA1_c08480 are separated by 30 nucleotides PGA1_c08480 and PGA1_c08490 are separated by 27 nucleotides
PGA1_c08450: PGA1_c08450 - Predicted membrane protein (DUF2061)., at 874,611 to 874,817
_c08450
PGA1_c08460: PGA1_c08460 - putative fatty acid desaturase, at 874,810 to 875,754
_c08460
PGA1_c08470: PGA1_c08470 - putative integral membrane protein, at 875,772 to 876,674
_c08470
PGA1_c08480: PGA1_c08480 - NUDIX hydrolase-like protein, at 876,705 to 877,472
_c08480
PGA1_c08490: PGA1_c08490 - Uncharacterized protein conserved in bacteria, at 877,500 to 877,916
_c08490
Position (kb) 875
876
877 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 874.778 kb on + strand, within PGA1_c08450 at 874.783 kb on + strand, within PGA1_c08450 at 875.012 kb on + strand, within PGA1_c08460 at 875.012 kb on + strand, within PGA1_c08460 at 875.020 kb on - strand, within PGA1_c08460 at 875.020 kb on - strand, within PGA1_c08460 at 875.020 kb on - strand, within PGA1_c08460 at 875.156 kb on + strand, within PGA1_c08460 at 875.156 kb on + strand, within PGA1_c08460 at 875.162 kb on - strand, within PGA1_c08460 at 875.162 kb on - strand, within PGA1_c08460 at 875.214 kb on + strand, within PGA1_c08460 at 875.214 kb on + strand, within PGA1_c08460 at 875.270 kb on + strand, within PGA1_c08460 at 875.270 kb on + strand, within PGA1_c08460 at 875.270 kb on + strand, within PGA1_c08460 at 875.270 kb on + strand, within PGA1_c08460 at 875.273 kb on - strand, within PGA1_c08460 at 875.278 kb on - strand, within PGA1_c08460 at 875.278 kb on - strand, within PGA1_c08460 at 875.281 kb on + strand, within PGA1_c08460 at 875.283 kb on - strand, within PGA1_c08460 at 875.299 kb on + strand, within PGA1_c08460 at 875.420 kb on - strand, within PGA1_c08460 at 875.438 kb on + strand, within PGA1_c08460 at 875.526 kb on - strand, within PGA1_c08460 at 875.616 kb on + strand, within PGA1_c08460 at 875.619 kb on + strand, within PGA1_c08460 at 875.635 kb on - strand, within PGA1_c08460 at 875.635 kb on - strand, within PGA1_c08460 at 875.663 kb on + strand at 875.686 kb on + strand at 875.694 kb on - strand at 875.696 kb on + strand at 875.696 kb on + strand at 875.696 kb on + strand at 875.704 kb on - strand at 875.704 kb on - strand at 875.704 kb on - strand at 875.704 kb on - strand at 875.704 kb on - strand at 875.704 kb on - strand at 875.704 kb on - strand at 875.704 kb on - strand at 875.704 kb on - strand at 875.708 kb on + strand at 875.728 kb on - strand at 875.746 kb on - strand at 875.824 kb on + strand at 875.851 kb on + strand at 875.851 kb on + strand at 875.859 kb on - strand at 875.861 kb on + strand at 875.861 kb on + strand at 875.861 kb on + strand at 875.861 kb on + strand at 875.896 kb on + strand, within PGA1_c08470 at 875.904 kb on + strand, within PGA1_c08470 at 875.909 kb on + strand, within PGA1_c08470 at 875.909 kb on + strand, within PGA1_c08470 at 875.912 kb on - strand, within PGA1_c08470 at 875.917 kb on - strand, within PGA1_c08470 at 875.932 kb on + strand, within PGA1_c08470 at 875.946 kb on + strand, within PGA1_c08470 at 875.996 kb on + strand, within PGA1_c08470 at 876.006 kb on + strand, within PGA1_c08470 at 876.006 kb on + strand, within PGA1_c08470 at 876.006 kb on + strand, within PGA1_c08470 at 876.006 kb on + strand, within PGA1_c08470 at 876.006 kb on + strand, within PGA1_c08470 at 876.014 kb on - strand, within PGA1_c08470 at 876.014 kb on - strand, within PGA1_c08470 at 876.014 kb on - strand, within PGA1_c08470 at 876.014 kb on - strand, within PGA1_c08470 at 876.014 kb on - strand, within PGA1_c08470 at 876.120 kb on - strand, within PGA1_c08470 at 876.130 kb on - strand, within PGA1_c08470 at 876.149 kb on - strand, within PGA1_c08470 at 876.189 kb on - strand, within PGA1_c08470 at 876.199 kb on - strand, within PGA1_c08470 at 876.199 kb on - strand, within PGA1_c08470 at 876.206 kb on + strand, within PGA1_c08470 at 876.208 kb on + strand, within PGA1_c08470 at 876.228 kb on + strand, within PGA1_c08470 at 876.249 kb on + strand, within PGA1_c08470 at 876.301 kb on - strand, within PGA1_c08470 at 876.349 kb on + strand, within PGA1_c08470 at 876.357 kb on - strand, within PGA1_c08470 at 876.386 kb on + strand, within PGA1_c08470 at 876.403 kb on - strand, within PGA1_c08470 at 876.423 kb on - strand, within PGA1_c08470 at 876.434 kb on + strand, within PGA1_c08470 at 876.463 kb on + strand, within PGA1_c08470 at 876.471 kb on - strand, within PGA1_c08470 at 876.540 kb on + strand, within PGA1_c08470 at 876.549 kb on - strand, within PGA1_c08470 at 876.704 kb on - strand at 876.724 kb on + strand at 876.791 kb on - strand, within PGA1_c08480 at 876.862 kb on + strand, within PGA1_c08480 at 876.939 kb on + strand, within PGA1_c08480 at 877.001 kb on - strand, within PGA1_c08480 at 877.107 kb on - strand, within PGA1_c08480 at 877.170 kb on + strand, within PGA1_c08480 at 877.233 kb on - strand, within PGA1_c08480 at 877.423 kb on + strand at 877.558 kb on + strand, within PGA1_c08490 at 877.558 kb on + strand, within PGA1_c08490 at 877.558 kb on + strand, within PGA1_c08490 at 877.558 kb on + strand, within PGA1_c08490 at 877.657 kb on + strand, within PGA1_c08490
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 874,778 + PGA1_c08450 0.81 +1.3 874,783 + PGA1_c08450 0.83 +0.5 875,012 + PGA1_c08460 0.21 -1.0 875,012 + PGA1_c08460 0.21 -0.4 875,020 - PGA1_c08460 0.22 +0.8 875,020 - PGA1_c08460 0.22 +0.2 875,020 - PGA1_c08460 0.22 -0.2 875,156 + PGA1_c08460 0.37 +0.3 875,156 + PGA1_c08460 0.37 -0.3 875,162 - PGA1_c08460 0.37 +0.2 875,162 - PGA1_c08460 0.37 -0.6 875,214 + PGA1_c08460 0.43 -0.9 875,214 + PGA1_c08460 0.43 +1.7 875,270 + PGA1_c08460 0.49 -0.8 875,270 + PGA1_c08460 0.49 +0.4 875,270 + PGA1_c08460 0.49 -1.6 875,270 + PGA1_c08460 0.49 +0.2 875,273 - PGA1_c08460 0.49 +0.2 875,278 - PGA1_c08460 0.50 +0.6 875,278 - PGA1_c08460 0.50 -0.6 875,281 + PGA1_c08460 0.50 +0.5 875,283 - PGA1_c08460 0.50 +0.6 875,299 + PGA1_c08460 0.52 +0.0 875,420 - PGA1_c08460 0.65 +0.6 875,438 + PGA1_c08460 0.66 +0.3 875,526 - PGA1_c08460 0.76 -0.7 875,616 + PGA1_c08460 0.85 -2.9 875,619 + PGA1_c08460 0.86 +0.6 875,635 - PGA1_c08460 0.87 -1.6 875,635 - PGA1_c08460 0.87 -0.0 875,663 + -0.6 875,686 + -0.0 875,694 - -1.6 875,696 + -0.6 875,696 + +0.4 875,696 + +1.5 875,704 - +0.3 875,704 - -1.2 875,704 - -1.0 875,704 - +0.4 875,704 - -1.8 875,704 - +1.7 875,704 - -1.9 875,704 - -0.9 875,704 - -1.4 875,708 + -1.4 875,728 - -0.3 875,746 - -0.5 875,824 + -2.2 875,851 + +0.3 875,851 + -0.2 875,859 - +0.1 875,861 + -1.5 875,861 + -0.2 875,861 + +0.4 875,861 + +0.4 875,896 + PGA1_c08470 0.14 +0.7 875,904 + PGA1_c08470 0.15 +0.3 875,909 + PGA1_c08470 0.15 -0.8 875,909 + PGA1_c08470 0.15 +0.2 875,912 - PGA1_c08470 0.16 +0.9 875,917 - PGA1_c08470 0.16 -0.1 875,932 + PGA1_c08470 0.18 -0.2 875,946 + PGA1_c08470 0.19 -1.0 875,996 + PGA1_c08470 0.25 +0.3 876,006 + PGA1_c08470 0.26 +0.7 876,006 + PGA1_c08470 0.26 +1.0 876,006 + PGA1_c08470 0.26 -2.1 876,006 + PGA1_c08470 0.26 -0.3 876,006 + PGA1_c08470 0.26 +1.4 876,014 - PGA1_c08470 0.27 +0.4 876,014 - PGA1_c08470 0.27 +0.4 876,014 - PGA1_c08470 0.27 -2.7 876,014 - PGA1_c08470 0.27 +1.0 876,014 - PGA1_c08470 0.27 +0.7 876,120 - PGA1_c08470 0.39 -1.0 876,130 - PGA1_c08470 0.40 -0.0 876,149 - PGA1_c08470 0.42 +0.5 876,189 - PGA1_c08470 0.46 -1.2 876,199 - PGA1_c08470 0.47 +0.1 876,199 - PGA1_c08470 0.47 -0.7 876,206 + PGA1_c08470 0.48 -0.8 876,208 + PGA1_c08470 0.48 +0.9 876,228 + PGA1_c08470 0.50 -0.8 876,249 + PGA1_c08470 0.53 -0.1 876,301 - PGA1_c08470 0.59 +0.2 876,349 + PGA1_c08470 0.64 -0.2 876,357 - PGA1_c08470 0.65 +0.1 876,386 + PGA1_c08470 0.68 +0.2 876,403 - PGA1_c08470 0.70 +0.3 876,423 - PGA1_c08470 0.72 -1.2 876,434 + PGA1_c08470 0.73 -0.3 876,463 + PGA1_c08470 0.77 +0.5 876,471 - PGA1_c08470 0.77 -1.0 876,540 + PGA1_c08470 0.85 -1.8 876,549 - PGA1_c08470 0.86 -1.8 876,704 - +0.2 876,724 + -0.2 876,791 - PGA1_c08480 0.11 -0.1 876,862 + PGA1_c08480 0.20 -0.5 876,939 + PGA1_c08480 0.30 -0.7 877,001 - PGA1_c08480 0.39 -0.9 877,107 - PGA1_c08480 0.52 -1.7 877,170 + PGA1_c08480 0.61 +2.2 877,233 - PGA1_c08480 0.69 -0.1 877,423 + -0.7 877,558 + PGA1_c08490 0.14 -1.0 877,558 + PGA1_c08490 0.14 -1.4 877,558 + PGA1_c08490 0.14 -0.8 877,558 + PGA1_c08490 0.14 +0.3 877,657 + PGA1_c08490 0.38 +2.2
Or see this region's nucleotide sequence