Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c08460

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c08440 and PGA1_c08450 are separated by 109 nucleotidesPGA1_c08450 and PGA1_c08460 overlap by 8 nucleotidesPGA1_c08460 and PGA1_c08470 are separated by 17 nucleotidesPGA1_c08470 and PGA1_c08480 are separated by 30 nucleotides PGA1_c08440: PGA1_c08440 - Helix-turn-helix., at 873,641 to 874,501 _c08440 PGA1_c08450: PGA1_c08450 - Predicted membrane protein (DUF2061)., at 874,611 to 874,817 _c08450 PGA1_c08460: PGA1_c08460 - putative fatty acid desaturase, at 874,810 to 875,754 _c08460 PGA1_c08470: PGA1_c08470 - putative integral membrane protein, at 875,772 to 876,674 _c08470 PGA1_c08480: PGA1_c08480 - NUDIX hydrolase-like protein, at 876,705 to 877,472 _c08480 Position (kb) 874 875 876Strain fitness (log2 ratio) -3 -2 -1 0 1at 873.815 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.828 kb on + strand, within PGA1_c08440at 873.831 kb on - strand, within PGA1_c08440at 873.836 kb on - strand, within PGA1_c08440at 873.836 kb on - strand, within PGA1_c08440at 873.836 kb on - strand, within PGA1_c08440at 873.836 kb on - strand, within PGA1_c08440at 873.836 kb on - strand, within PGA1_c08440at 873.843 kb on + strand, within PGA1_c08440at 873.882 kb on + strand, within PGA1_c08440at 873.882 kb on + strand, within PGA1_c08440at 873.890 kb on - strand, within PGA1_c08440at 873.890 kb on - strand, within PGA1_c08440at 873.890 kb on - strand, within PGA1_c08440at 873.900 kb on - strand, within PGA1_c08440at 873.958 kb on + strand, within PGA1_c08440at 873.958 kb on + strand, within PGA1_c08440at 873.966 kb on - strand, within PGA1_c08440at 874.057 kb on + strand, within PGA1_c08440at 874.078 kb on - strand, within PGA1_c08440at 874.297 kb on + strand, within PGA1_c08440at 874.398 kb on + strand, within PGA1_c08440at 874.430 kb on + strandat 874.445 kb on + strandat 874.451 kb on - strandat 874.453 kb on - strandat 874.453 kb on - strandat 874.472 kb on + strandat 874.570 kb on + strandat 874.570 kb on + strandat 874.578 kb on - strandat 874.578 kb on - strandat 874.578 kb on - strandat 874.578 kb on - strandat 874.578 kb on - strandat 874.722 kb on + strand, within PGA1_c08450at 874.778 kb on + strand, within PGA1_c08450at 874.783 kb on + strand, within PGA1_c08450at 875.012 kb on + strand, within PGA1_c08460at 875.012 kb on + strand, within PGA1_c08460at 875.020 kb on - strand, within PGA1_c08460at 875.020 kb on - strand, within PGA1_c08460at 875.020 kb on - strand, within PGA1_c08460at 875.156 kb on + strand, within PGA1_c08460at 875.156 kb on + strand, within PGA1_c08460at 875.162 kb on - strand, within PGA1_c08460at 875.162 kb on - strand, within PGA1_c08460at 875.214 kb on + strand, within PGA1_c08460at 875.214 kb on + strand, within PGA1_c08460at 875.270 kb on + strand, within PGA1_c08460at 875.270 kb on + strand, within PGA1_c08460at 875.270 kb on + strand, within PGA1_c08460at 875.270 kb on + strand, within PGA1_c08460at 875.273 kb on - strand, within PGA1_c08460at 875.278 kb on - strand, within PGA1_c08460at 875.278 kb on - strand, within PGA1_c08460at 875.281 kb on + strand, within PGA1_c08460at 875.283 kb on - strand, within PGA1_c08460at 875.299 kb on + strand, within PGA1_c08460at 875.420 kb on - strand, within PGA1_c08460at 875.438 kb on + strand, within PGA1_c08460at 875.526 kb on - strand, within PGA1_c08460at 875.616 kb on + strand, within PGA1_c08460at 875.619 kb on + strand, within PGA1_c08460at 875.635 kb on - strand, within PGA1_c08460at 875.635 kb on - strand, within PGA1_c08460at 875.663 kb on + strandat 875.686 kb on + strandat 875.694 kb on - strandat 875.696 kb on + strandat 875.696 kb on + strandat 875.696 kb on + strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.704 kb on - strandat 875.708 kb on + strandat 875.728 kb on - strandat 875.746 kb on - strandat 875.824 kb on + strandat 875.851 kb on + strandat 875.851 kb on + strandat 875.859 kb on - strandat 875.861 kb on + strandat 875.861 kb on + strandat 875.861 kb on + strandat 875.861 kb on + strandat 875.896 kb on + strand, within PGA1_c08470at 875.904 kb on + strand, within PGA1_c08470at 875.909 kb on + strand, within PGA1_c08470at 875.909 kb on + strand, within PGA1_c08470at 875.912 kb on - strand, within PGA1_c08470at 875.917 kb on - strand, within PGA1_c08470at 875.932 kb on + strand, within PGA1_c08470at 875.946 kb on + strand, within PGA1_c08470at 875.996 kb on + strand, within PGA1_c08470at 876.006 kb on + strand, within PGA1_c08470at 876.006 kb on + strand, within PGA1_c08470at 876.006 kb on + strand, within PGA1_c08470at 876.006 kb on + strand, within PGA1_c08470at 876.006 kb on + strand, within PGA1_c08470at 876.014 kb on - strand, within PGA1_c08470at 876.014 kb on - strand, within PGA1_c08470at 876.014 kb on - strand, within PGA1_c08470at 876.014 kb on - strand, within PGA1_c08470at 876.014 kb on - strand, within PGA1_c08470at 876.120 kb on - strand, within PGA1_c08470at 876.130 kb on - strand, within PGA1_c08470at 876.149 kb on - strand, within PGA1_c08470at 876.189 kb on - strand, within PGA1_c08470at 876.199 kb on - strand, within PGA1_c08470at 876.199 kb on - strand, within PGA1_c08470at 876.206 kb on + strand, within PGA1_c08470at 876.208 kb on + strand, within PGA1_c08470at 876.228 kb on + strand, within PGA1_c08470at 876.249 kb on + strand, within PGA1_c08470at 876.301 kb on - strand, within PGA1_c08470at 876.349 kb on + strand, within PGA1_c08470at 876.357 kb on - strand, within PGA1_c08470at 876.386 kb on + strand, within PGA1_c08470at 876.403 kb on - strand, within PGA1_c08470at 876.423 kb on - strand, within PGA1_c08470at 876.434 kb on + strand, within PGA1_c08470at 876.463 kb on + strand, within PGA1_c08470at 876.471 kb on - strand, within PGA1_c08470at 876.540 kb on + strand, within PGA1_c08470at 876.549 kb on - strand, within PGA1_c08470at 876.704 kb on - strandat 876.724 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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873,815 + PGA1_c08440 0.20 +0.0
873,828 + PGA1_c08440 0.22 +0.2
873,828 + PGA1_c08440 0.22 +1.2
873,828 + PGA1_c08440 0.22 +0.6
873,828 + PGA1_c08440 0.22 -1.3
873,828 + PGA1_c08440 0.22 +1.3
873,828 + PGA1_c08440 0.22 +1.1
873,828 + PGA1_c08440 0.22 +1.2
873,831 - PGA1_c08440 0.22 +0.7
873,836 - PGA1_c08440 0.23 +1.1
873,836 - PGA1_c08440 0.23 -0.5
873,836 - PGA1_c08440 0.23 +1.2
873,836 - PGA1_c08440 0.23 -0.6
873,836 - PGA1_c08440 0.23 +0.7
873,843 + PGA1_c08440 0.23 -2.0
873,882 + PGA1_c08440 0.28 +0.6
873,882 + PGA1_c08440 0.28 +0.8
873,890 - PGA1_c08440 0.29 +1.6
873,890 - PGA1_c08440 0.29 -0.3
873,890 - PGA1_c08440 0.29 -1.2
873,900 - PGA1_c08440 0.30 +0.1
873,958 + PGA1_c08440 0.37 +0.1
873,958 + PGA1_c08440 0.37 +0.2
873,966 - PGA1_c08440 0.38 -0.3
874,057 + PGA1_c08440 0.48 +1.2
874,078 - PGA1_c08440 0.51 +0.1
874,297 + PGA1_c08440 0.76 +0.0
874,398 + PGA1_c08440 0.88 -0.0
874,430 + +0.2
874,445 + +0.3
874,451 - +0.7
874,453 - +1.0
874,453 - -0.0
874,472 + -2.0
874,570 + -1.0
874,570 + -1.9
874,578 - -2.9
874,578 - +0.7
874,578 - -0.4
874,578 - -0.4
874,578 - -2.5
874,722 + PGA1_c08450 0.54 +0.6
874,778 + PGA1_c08450 0.81 +1.3
874,783 + PGA1_c08450 0.83 +0.5
875,012 + PGA1_c08460 0.21 -1.0
875,012 + PGA1_c08460 0.21 -0.4
875,020 - PGA1_c08460 0.22 +0.8
875,020 - PGA1_c08460 0.22 +0.2
875,020 - PGA1_c08460 0.22 -0.2
875,156 + PGA1_c08460 0.37 +0.3
875,156 + PGA1_c08460 0.37 -0.3
875,162 - PGA1_c08460 0.37 +0.2
875,162 - PGA1_c08460 0.37 -0.6
875,214 + PGA1_c08460 0.43 -0.9
875,214 + PGA1_c08460 0.43 +1.7
875,270 + PGA1_c08460 0.49 -0.8
875,270 + PGA1_c08460 0.49 +0.4
875,270 + PGA1_c08460 0.49 -1.6
875,270 + PGA1_c08460 0.49 +0.2
875,273 - PGA1_c08460 0.49 +0.2
875,278 - PGA1_c08460 0.50 +0.6
875,278 - PGA1_c08460 0.50 -0.6
875,281 + PGA1_c08460 0.50 +0.5
875,283 - PGA1_c08460 0.50 +0.6
875,299 + PGA1_c08460 0.52 +0.0
875,420 - PGA1_c08460 0.65 +0.6
875,438 + PGA1_c08460 0.66 +0.3
875,526 - PGA1_c08460 0.76 -0.7
875,616 + PGA1_c08460 0.85 -2.9
875,619 + PGA1_c08460 0.86 +0.6
875,635 - PGA1_c08460 0.87 -1.6
875,635 - PGA1_c08460 0.87 -0.0
875,663 + -0.6
875,686 + -0.0
875,694 - -1.6
875,696 + -0.6
875,696 + +0.4
875,696 + +1.5
875,704 - +0.3
875,704 - -1.2
875,704 - -1.0
875,704 - +0.4
875,704 - -1.8
875,704 - +1.7
875,704 - -1.9
875,704 - -0.9
875,704 - -1.4
875,708 + -1.4
875,728 - -0.3
875,746 - -0.5
875,824 + -2.2
875,851 + +0.3
875,851 + -0.2
875,859 - +0.1
875,861 + -1.5
875,861 + -0.2
875,861 + +0.4
875,861 + +0.4
875,896 + PGA1_c08470 0.14 +0.7
875,904 + PGA1_c08470 0.15 +0.3
875,909 + PGA1_c08470 0.15 -0.8
875,909 + PGA1_c08470 0.15 +0.2
875,912 - PGA1_c08470 0.16 +0.9
875,917 - PGA1_c08470 0.16 -0.1
875,932 + PGA1_c08470 0.18 -0.2
875,946 + PGA1_c08470 0.19 -1.0
875,996 + PGA1_c08470 0.25 +0.3
876,006 + PGA1_c08470 0.26 +0.7
876,006 + PGA1_c08470 0.26 +1.0
876,006 + PGA1_c08470 0.26 -2.1
876,006 + PGA1_c08470 0.26 -0.3
876,006 + PGA1_c08470 0.26 +1.4
876,014 - PGA1_c08470 0.27 +0.4
876,014 - PGA1_c08470 0.27 +0.4
876,014 - PGA1_c08470 0.27 -2.7
876,014 - PGA1_c08470 0.27 +1.0
876,014 - PGA1_c08470 0.27 +0.7
876,120 - PGA1_c08470 0.39 -1.0
876,130 - PGA1_c08470 0.40 -0.0
876,149 - PGA1_c08470 0.42 +0.5
876,189 - PGA1_c08470 0.46 -1.2
876,199 - PGA1_c08470 0.47 +0.1
876,199 - PGA1_c08470 0.47 -0.7
876,206 + PGA1_c08470 0.48 -0.8
876,208 + PGA1_c08470 0.48 +0.9
876,228 + PGA1_c08470 0.50 -0.8
876,249 + PGA1_c08470 0.53 -0.1
876,301 - PGA1_c08470 0.59 +0.2
876,349 + PGA1_c08470 0.64 -0.2
876,357 - PGA1_c08470 0.65 +0.1
876,386 + PGA1_c08470 0.68 +0.2
876,403 - PGA1_c08470 0.70 +0.3
876,423 - PGA1_c08470 0.72 -1.2
876,434 + PGA1_c08470 0.73 -0.3
876,463 + PGA1_c08470 0.77 +0.5
876,471 - PGA1_c08470 0.77 -1.0
876,540 + PGA1_c08470 0.85 -1.8
876,549 - PGA1_c08470 0.86 -1.8
876,704 - +0.2
876,724 + -0.2

Or see this region's nucleotide sequence