Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_699 and HP15_700 are separated by 2 nucleotides HP15_700 and HP15_701 overlap by 4 nucleotides HP15_701 and HP15_702 are separated by 273 nucleotides HP15_702 and HP15_703 are separated by 469 nucleotides
HP15_699: HP15_699 - conserved hypothetical protein, at 708,898 to 710,031
_699
HP15_700: HP15_700 - hypothetical protein, at 710,034 to 710,192
_700
HP15_701: HP15_701 - hypothetical protein, at 710,189 to 710,449
_701
HP15_702: HP15_702 - conserved hypothetical protein, at 710,723 to 711,118
_702
HP15_703: HP15_703 - phage integrase, at 711,588 to 712,454
_703
Position (kb) 710
711
712 Strain fitness (log2 ratio) -2
-1
0
1 at 709.793 kb on - strand, within HP15_699 at 709.858 kb on + strand, within HP15_699 at 709.866 kb on - strand, within HP15_699 at 709.895 kb on - strand, within HP15_699 at 709.919 kb on - strand at 709.924 kb on - strand at 709.969 kb on + strand at 709.994 kb on - strand at 710.059 kb on + strand, within HP15_700 at 710.193 kb on + strand at 710.201 kb on - strand at 710.269 kb on - strand, within HP15_701 at 710.435 kb on - strand at 710.524 kb on + strand at 710.532 kb on - strand at 710.753 kb on - strand at 710.755 kb on + strand at 710.939 kb on - strand, within HP15_702 at 710.949 kb on - strand, within HP15_702 at 710.956 kb on - strand, within HP15_702 at 710.956 kb on - strand, within HP15_702 at 710.980 kb on + strand, within HP15_702 at 710.995 kb on - strand, within HP15_702 at 711.019 kb on - strand, within HP15_702 at 711.038 kb on - strand, within HP15_702 at 711.059 kb on + strand, within HP15_702 at 711.067 kb on - strand, within HP15_702 at 711.144 kb on + strand at 711.162 kb on - strand at 711.265 kb on + strand at 711.461 kb on - strand at 711.537 kb on + strand at 711.582 kb on - strand at 711.613 kb on - strand at 711.854 kb on - strand, within HP15_703 at 711.856 kb on + strand, within HP15_703 at 711.861 kb on + strand, within HP15_703 at 711.861 kb on + strand, within HP15_703 at 711.874 kb on - strand, within HP15_703 at 711.904 kb on - strand, within HP15_703 at 712.064 kb on + strand, within HP15_703
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 709,793 - HP15_699 0.79 +0.1 709,858 + HP15_699 0.85 -0.2 709,866 - HP15_699 0.85 -0.4 709,895 - HP15_699 0.88 -0.1 709,919 - -0.1 709,924 - +0.1 709,969 + -0.1 709,994 - -0.3 710,059 + HP15_700 0.16 -0.6 710,193 + +0.3 710,201 - +0.3 710,269 - HP15_701 0.31 +0.4 710,435 - +1.0 710,524 + -0.4 710,532 - -0.3 710,753 - -0.2 710,755 + -0.9 710,939 - HP15_702 0.55 +0.3 710,949 - HP15_702 0.57 -0.1 710,956 - HP15_702 0.59 -0.0 710,956 - HP15_702 0.59 -0.3 710,980 + HP15_702 0.65 -1.8 710,995 - HP15_702 0.69 +0.7 711,019 - HP15_702 0.75 -0.0 711,038 - HP15_702 0.80 -0.1 711,059 + HP15_702 0.85 -0.5 711,067 - HP15_702 0.87 -1.0 711,144 + +0.2 711,162 - +0.3 711,265 + -0.6 711,461 - -0.3 711,537 + +1.4 711,582 - +0.5 711,613 - +0.4 711,854 - HP15_703 0.31 -0.5 711,856 + HP15_703 0.31 -0.4 711,861 + HP15_703 0.31 -0.3 711,861 + HP15_703 0.31 -0.3 711,874 - HP15_703 0.33 -0.1 711,904 - HP15_703 0.36 -0.1 712,064 + HP15_703 0.55 +1.2
Or see this region's nucleotide sequence