Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_651 and HP15_652 are separated by 123 nucleotides HP15_652 and HP15_653 are separated by 50 nucleotides HP15_653 and HP15_654 overlap by 1 nucleotides
HP15_651: HP15_651 - protein putative phage tail tape measure protein-like protein, at 672,672 to 674,426
_651
HP15_652: HP15_652 - conserved hypothetical protein, at 674,550 to 674,834
_652
HP15_653: HP15_653 - phage major tail tube protein, at 674,885 to 675,391
_653
HP15_654: HP15_654 - major tail sheath protein, at 675,391 to 676,908
_654
Position (kb) 674
675 Strain fitness (log2 ratio) -1
0
1
2 at 673.601 kb on + strand, within HP15_651 at 673.621 kb on - strand, within HP15_651 at 673.651 kb on + strand, within HP15_651 at 673.651 kb on + strand, within HP15_651 at 673.849 kb on + strand, within HP15_651 at 673.862 kb on - strand, within HP15_651 at 673.880 kb on - strand, within HP15_651 at 673.898 kb on - strand, within HP15_651 at 673.917 kb on - strand, within HP15_651 at 673.929 kb on + strand, within HP15_651 at 673.933 kb on - strand, within HP15_651 at 673.993 kb on - strand, within HP15_651 at 674.225 kb on - strand, within HP15_651 at 674.352 kb on + strand at 674.461 kb on - strand at 674.463 kb on + strand at 674.518 kb on + strand at 674.574 kb on + strand at 674.576 kb on + strand at 674.710 kb on - strand, within HP15_652 at 674.741 kb on + strand, within HP15_652 at 674.811 kb on + strand at 674.819 kb on - strand at 674.843 kb on - strand at 674.941 kb on + strand, within HP15_653 at 675.027 kb on + strand, within HP15_653 at 675.032 kb on + strand, within HP15_653 at 675.054 kb on - strand, within HP15_653 at 675.111 kb on - strand, within HP15_653 at 675.139 kb on - strand, within HP15_653 at 675.198 kb on + strand, within HP15_653 at 675.250 kb on + strand, within HP15_653 at 675.250 kb on + strand, within HP15_653 at 675.250 kb on - strand, within HP15_653 at 675.258 kb on - strand, within HP15_653 at 675.258 kb on - strand, within HP15_653 at 675.258 kb on - strand, within HP15_653 at 675.309 kb on - strand, within HP15_653 at 675.312 kb on + strand, within HP15_653 at 675.333 kb on + strand, within HP15_653 at 675.333 kb on + strand, within HP15_653 at 675.341 kb on - strand at 675.341 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.366 kb on - strand at 675.376 kb on - strand at 675.440 kb on + strand at 675.455 kb on - strand at 675.482 kb on + strand at 675.488 kb on + strand at 675.525 kb on - strand at 675.589 kb on - strand, within HP15_654 at 675.619 kb on + strand, within HP15_654 at 675.644 kb on + strand, within HP15_654 at 675.644 kb on + strand at 675.814 kb on - strand, within HP15_654 at 675.827 kb on + strand, within HP15_654
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 673,601 + HP15_651 0.53 -0.1 673,621 - HP15_651 0.54 -0.6 673,651 + HP15_651 0.56 -0.1 673,651 + HP15_651 0.56 +0.0 673,849 + HP15_651 0.67 -1.2 673,862 - HP15_651 0.68 -1.1 673,880 - HP15_651 0.69 +0.8 673,898 - HP15_651 0.70 -1.1 673,917 - HP15_651 0.71 -0.8 673,929 + HP15_651 0.72 -1.2 673,933 - HP15_651 0.72 +0.2 673,993 - HP15_651 0.75 -0.2 674,225 - HP15_651 0.88 +1.6 674,352 + -1.3 674,461 - -0.1 674,463 + -0.3 674,518 + -0.7 674,574 + +2.0 674,576 + +0.2 674,710 - HP15_652 0.56 -0.5 674,741 + HP15_652 0.67 -0.8 674,811 + +0.4 674,819 - +0.1 674,843 - -0.6 674,941 + HP15_653 0.11 -1.0 675,027 + HP15_653 0.28 +1.0 675,032 + HP15_653 0.29 -0.9 675,054 - HP15_653 0.33 +0.3 675,111 - HP15_653 0.45 -1.4 675,139 - HP15_653 0.50 -0.6 675,198 + HP15_653 0.62 -0.4 675,250 + HP15_653 0.72 -1.4 675,250 + HP15_653 0.72 +0.3 675,250 - HP15_653 0.72 -0.1 675,258 - HP15_653 0.74 -0.5 675,258 - HP15_653 0.74 +1.5 675,258 - HP15_653 0.74 -0.6 675,309 - HP15_653 0.84 +0.5 675,312 + HP15_653 0.84 -0.9 675,333 + HP15_653 0.88 -0.1 675,333 + HP15_653 0.88 +0.4 675,341 - -0.6 675,341 - +0.1 675,366 - +0.5 675,366 - -0.3 675,366 - -0.5 675,366 - -0.2 675,376 - +0.0 675,440 + +0.0 675,455 - -0.8 675,482 + -0.6 675,488 + -0.9 675,525 - +0.7 675,589 - HP15_654 0.13 -1.1 675,619 + HP15_654 0.15 -0.2 675,644 + HP15_654 0.17 -0.5 675,644 + +1.2 675,814 - HP15_654 0.28 -0.8 675,827 + HP15_654 0.29 +0.3
Or see this region's nucleotide sequence