Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0546

Experiment: Parabanic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0544 and Psest_0545 are separated by 76 nucleotidesPsest_0545 and Psest_0546 overlap by 4 nucleotidesPsest_0546 and Psest_0547 overlap by 4 nucleotidesPsest_0547 and Psest_0548 overlap by 4 nucleotides Psest_0544: Psest_0544 - Hydrogenase/urease accessory protein, at 599,707 to 600,279 _0544 Psest_0545: Psest_0545 - urease accessory protein UreG, at 600,356 to 600,970 _0545 Psest_0546: Psest_0546 - hypothetical protein, at 600,967 to 601,632 _0546 Psest_0547: Psest_0547 - Urease accessory protein UreF, at 601,629 to 602,321 _0547 Psest_0548: Psest_0548 - Urease accessory protein UreE, at 602,318 to 602,818 _0548 Position (kb) 600 601 602Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 600.124 kb on + strand, within Psest_0544at 600.125 kb on - strand, within Psest_0544at 600.271 kb on + strandat 600.271 kb on + strandat 600.271 kb on + strandat 600.271 kb on + strandat 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.606 kb on + strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.607 kb on - strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.843 kb on + strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.844 kb on - strand, within Psest_0545at 600.873 kb on + strand, within Psest_0545at 601.060 kb on - strand, within Psest_0546at 601.080 kb on + strand, within Psest_0546at 601.099 kb on + strand, within Psest_0546at 601.099 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.168 kb on + strand, within Psest_0546at 601.169 kb on - strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.317 kb on + strand, within Psest_0546at 601.362 kb on + strand, within Psest_0546at 601.429 kb on + strand, within Psest_0546at 601.595 kb on - strandat 601.637 kb on + strandat 601.637 kb on + strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.638 kb on - strandat 601.651 kb on + strandat 601.651 kb on + strandat 601.652 kb on - strandat 601.652 kb on - strandat 602.239 kb on + strand, within Psest_0547at 602.239 kb on + strand, within Psest_0547at 602.239 kb on + strand, within Psest_0547at 602.240 kb on - strand, within Psest_0547at 602.246 kb on - strand, within Psest_0547at 602.327 kb on + strandat 602.356 kb on - strandat 602.484 kb on + strand, within Psest_0548at 602.484 kb on + strand, within Psest_0548at 602.484 kb on + strand, within Psest_0548at 602.484 kb on + strand, within Psest_0548at 602.485 kb on - strand, within Psest_0548at 602.485 kb on - strand, within Psest_0548at 602.485 kb on - strand, within Psest_0548at 602.485 kb on - strand, within Psest_0548at 602.485 kb on - strand, within Psest_0548

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
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600,124 + Psest_0544 0.73 -2.4
600,125 - Psest_0544 0.73 -0.7
600,271 + -3.4
600,271 + -2.4
600,271 + -2.9
600,271 + -1.2
600,606 + Psest_0545 0.41 -2.9
600,606 + Psest_0545 0.41 -2.4
600,606 + Psest_0545 0.41 -1.8
600,606 + Psest_0545 0.41 -2.6
600,606 + Psest_0545 0.41 -1.0
600,606 + Psest_0545 0.41 -2.2
600,606 + Psest_0545 0.41 -1.0
600,606 + Psest_0545 0.41 -1.9
600,606 + Psest_0545 0.41 -1.5
600,606 + Psest_0545 0.41 -4.0
600,606 + Psest_0545 0.41 -1.0
600,606 + Psest_0545 0.41 -1.0
600,606 + Psest_0545 0.41 -3.2
600,607 - Psest_0545 0.41 -3.6
600,607 - Psest_0545 0.41 -1.0
600,607 - Psest_0545 0.41 -2.2
600,607 - Psest_0545 0.41 +0.3
600,607 - Psest_0545 0.41 -0.0
600,607 - Psest_0545 0.41 -1.3
600,843 + Psest_0545 0.79 -1.7
600,843 + Psest_0545 0.79 -1.3
600,843 + Psest_0545 0.79 -2.9
600,843 + Psest_0545 0.79 -1.3
600,843 + Psest_0545 0.79 -1.0
600,843 + Psest_0545 0.79 -1.0
600,843 + Psest_0545 0.79 -0.9
600,843 + Psest_0545 0.79 -1.4
600,843 + Psest_0545 0.79 -1.1
600,843 + Psest_0545 0.79 -2.6
600,843 + Psest_0545 0.79 -3.3
600,844 - Psest_0545 0.79 -0.7
600,844 - Psest_0545 0.79 -0.3
600,844 - Psest_0545 0.79 -3.6
600,844 - Psest_0545 0.79 -1.5
600,844 - Psest_0545 0.79 -3.9
600,844 - Psest_0545 0.79 -1.3
600,844 - Psest_0545 0.79 -2.4
600,844 - Psest_0545 0.79 -3.5
600,844 - Psest_0545 0.79 -1.5
600,873 + Psest_0545 0.84 -1.0
601,060 - Psest_0546 0.14 -0.2
601,080 + Psest_0546 0.17 -1.0
601,099 + Psest_0546 0.20 -1.8
601,099 + Psest_0546 0.20 -2.3
601,168 + Psest_0546 0.30 -1.5
601,168 + Psest_0546 0.30 -1.7
601,168 + Psest_0546 0.30 -3.2
601,168 + Psest_0546 0.30 -0.9
601,168 + Psest_0546 0.30 -3.5
601,169 - Psest_0546 0.30 +1.3
601,317 + Psest_0546 0.53 -1.7
601,317 + Psest_0546 0.53 -1.2
601,317 + Psest_0546 0.53 -1.7
601,317 + Psest_0546 0.53 -1.3
601,317 + Psest_0546 0.53 -2.2
601,362 + Psest_0546 0.59 -0.1
601,429 + Psest_0546 0.69 -0.3
601,595 - -1.7
601,637 + -1.9
601,637 + -3.0
601,638 - -1.7
601,638 - -0.6
601,638 - +1.3
601,638 - -1.7
601,638 - -1.3
601,638 - -0.7
601,651 + -2.9
601,651 + -0.7
601,652 - -4.4
601,652 - -0.7
602,239 + Psest_0547 0.88 -3.0
602,239 + Psest_0547 0.88 -2.8
602,239 + Psest_0547 0.88 -4.1
602,240 - Psest_0547 0.88 -2.3
602,246 - Psest_0547 0.89 -0.3
602,327 + -2.4
602,356 - -2.4
602,484 + Psest_0548 0.33 -2.4
602,484 + Psest_0548 0.33 -1.8
602,484 + Psest_0548 0.33 -3.6
602,484 + Psest_0548 0.33 -3.2
602,485 - Psest_0548 0.33 -3.3
602,485 - Psest_0548 0.33 -2.5
602,485 - Psest_0548 0.33 -0.7
602,485 - Psest_0548 0.33 -2.2
602,485 - Psest_0548 0.33 -2.3

Or see this region's nucleotide sequence