Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05140

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05130 and PGA1_c05140 are separated by 53 nucleotidesPGA1_c05140 and PGA1_c05150 are separated by 167 nucleotides PGA1_c05130: PGA1_c05130 - aldehyde dehydrogenase, at 505,458 to 506,888 _c05130 PGA1_c05140: PGA1_c05140 - D-amino acid dehydrogenase small subunit, at 506,942 to 508,192 _c05140 PGA1_c05150: PGA1_c05150 - chemoreceptor McpA, at 508,360 to 510,642 _c05150 Position (kb) 506 507 508 509Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 505.943 kb on + strand, within PGA1_c05130at 505.943 kb on + strand, within PGA1_c05130at 505.946 kb on - strand, within PGA1_c05130at 505.946 kb on - strand, within PGA1_c05130at 506.074 kb on + strand, within PGA1_c05130at 506.077 kb on - strand, within PGA1_c05130at 506.088 kb on - strand, within PGA1_c05130at 506.106 kb on - strand, within PGA1_c05130at 506.187 kb on + strand, within PGA1_c05130at 506.189 kb on - strand, within PGA1_c05130at 506.235 kb on + strand, within PGA1_c05130at 506.243 kb on - strand, within PGA1_c05130at 506.243 kb on - strand, within PGA1_c05130at 506.243 kb on - strand, within PGA1_c05130at 506.286 kb on + strand, within PGA1_c05130at 506.286 kb on + strand, within PGA1_c05130at 506.291 kb on + strand, within PGA1_c05130at 506.294 kb on - strand, within PGA1_c05130at 506.294 kb on - strand, within PGA1_c05130at 506.299 kb on - strand, within PGA1_c05130at 506.299 kb on - strand, within PGA1_c05130at 506.299 kb on - strand, within PGA1_c05130at 506.299 kb on - strand, within PGA1_c05130at 506.299 kb on - strand, within PGA1_c05130at 506.300 kb on - strand, within PGA1_c05130at 506.374 kb on - strand, within PGA1_c05130at 506.391 kb on + strand, within PGA1_c05130at 506.416 kb on + strand, within PGA1_c05130at 506.497 kb on - strand, within PGA1_c05130at 506.508 kb on + strand, within PGA1_c05130at 506.516 kb on - strand, within PGA1_c05130at 506.518 kb on + strand, within PGA1_c05130at 506.526 kb on - strand, within PGA1_c05130at 506.526 kb on - strand, within PGA1_c05130at 506.535 kb on - strand, within PGA1_c05130at 506.684 kb on + strand, within PGA1_c05130at 506.797 kb on + strandat 506.829 kb on - strandat 506.871 kb on + strandat 506.872 kb on + strandat 506.962 kb on - strandat 506.962 kb on - strandat 507.093 kb on - strand, within PGA1_c05140at 507.193 kb on + strand, within PGA1_c05140at 507.193 kb on + strand, within PGA1_c05140at 507.193 kb on + strand, within PGA1_c05140at 507.201 kb on - strand, within PGA1_c05140at 507.263 kb on - strand, within PGA1_c05140at 507.281 kb on - strand, within PGA1_c05140at 507.457 kb on + strand, within PGA1_c05140at 507.457 kb on + strand, within PGA1_c05140at 507.457 kb on + strand, within PGA1_c05140at 507.465 kb on - strand, within PGA1_c05140at 507.518 kb on + strand, within PGA1_c05140at 507.525 kb on + strand, within PGA1_c05140at 507.528 kb on - strand, within PGA1_c05140at 507.528 kb on - strand, within PGA1_c05140at 507.533 kb on - strand, within PGA1_c05140at 507.602 kb on + strand, within PGA1_c05140at 507.620 kb on - strand, within PGA1_c05140at 507.647 kb on + strand, within PGA1_c05140at 507.656 kb on + strand, within PGA1_c05140at 507.727 kb on + strand, within PGA1_c05140at 507.734 kb on + strand, within PGA1_c05140at 507.806 kb on - strand, within PGA1_c05140at 507.806 kb on - strand, within PGA1_c05140at 507.806 kb on - strand, within PGA1_c05140at 507.815 kb on + strand, within PGA1_c05140at 507.815 kb on + strand, within PGA1_c05140at 507.869 kb on - strand, within PGA1_c05140at 507.871 kb on + strand, within PGA1_c05140at 507.905 kb on - strand, within PGA1_c05140at 507.955 kb on + strand, within PGA1_c05140at 507.955 kb on + strand, within PGA1_c05140at 507.963 kb on - strand, within PGA1_c05140at 507.965 kb on + strand, within PGA1_c05140at 507.975 kb on + strand, within PGA1_c05140at 508.007 kb on - strand, within PGA1_c05140at 508.064 kb on + strand, within PGA1_c05140at 508.100 kb on - strandat 508.123 kb on + strandat 508.151 kb on - strandat 508.204 kb on + strandat 508.205 kb on + strandat 508.212 kb on + strandat 508.233 kb on + strandat 508.233 kb on + strandat 508.233 kb on + strandat 508.233 kb on + strandat 508.241 kb on - strandat 508.306 kb on + strandat 508.344 kb on + strandat 508.352 kb on - strandat 508.352 kb on - strandat 508.354 kb on + strandat 508.407 kb on + strandat 508.421 kb on - strandat 508.421 kb on - strandat 508.421 kb on - strandat 508.422 kb on + strandat 508.422 kb on + strandat 508.469 kb on - strandat 508.505 kb on + strandat 508.505 kb on + strandat 508.520 kb on - strandat 508.589 kb on + strand, within PGA1_c05150at 508.742 kb on - strand, within PGA1_c05150at 508.752 kb on - strand, within PGA1_c05150at 508.800 kb on + strand, within PGA1_c05150at 508.808 kb on - strand, within PGA1_c05150at 508.808 kb on - strand, within PGA1_c05150at 508.825 kb on + strand, within PGA1_c05150at 508.843 kb on - strand, within PGA1_c05150at 508.843 kb on - strand, within PGA1_c05150at 508.848 kb on + strand, within PGA1_c05150at 508.856 kb on - strand, within PGA1_c05150at 508.858 kb on + strand, within PGA1_c05150at 508.866 kb on - strand, within PGA1_c05150at 508.924 kb on - strand, within PGA1_c05150at 508.924 kb on - strand, within PGA1_c05150at 508.935 kb on - strand, within PGA1_c05150at 508.937 kb on - strand, within PGA1_c05150at 508.937 kb on - strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.962 kb on + strand, within PGA1_c05150at 508.988 kb on + strand, within PGA1_c05150at 508.991 kb on + strand, within PGA1_c05150at 509.026 kb on - strand, within PGA1_c05150at 509.071 kb on + strand, within PGA1_c05150at 509.076 kb on + strand, within PGA1_c05150at 509.079 kb on - strand, within PGA1_c05150at 509.084 kb on - strand, within PGA1_c05150at 509.084 kb on - strand, within PGA1_c05150at 509.084 kb on - strand, within PGA1_c05150at 509.174 kb on + strand, within PGA1_c05150at 509.182 kb on - strand, within PGA1_c05150at 509.184 kb on + strand, within PGA1_c05150

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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505,943 + PGA1_c05130 0.34 +0.6
505,943 + PGA1_c05130 0.34 +1.2
505,946 - PGA1_c05130 0.34 -0.1
505,946 - PGA1_c05130 0.34 +0.7
506,074 + PGA1_c05130 0.43 -0.8
506,077 - PGA1_c05130 0.43 -1.1
506,088 - PGA1_c05130 0.44 -0.8
506,106 - PGA1_c05130 0.45 -0.0
506,187 + PGA1_c05130 0.51 -0.4
506,189 - PGA1_c05130 0.51 +0.5
506,235 + PGA1_c05130 0.54 -0.2
506,243 - PGA1_c05130 0.55 -0.2
506,243 - PGA1_c05130 0.55 -1.3
506,243 - PGA1_c05130 0.55 +1.0
506,286 + PGA1_c05130 0.58 +0.4
506,286 + PGA1_c05130 0.58 +1.0
506,291 + PGA1_c05130 0.58 -1.6
506,294 - PGA1_c05130 0.58 -0.9
506,294 - PGA1_c05130 0.58 +1.2
506,299 - PGA1_c05130 0.59 +0.9
506,299 - PGA1_c05130 0.59 -0.4
506,299 - PGA1_c05130 0.59 +1.3
506,299 - PGA1_c05130 0.59 +1.4
506,299 - PGA1_c05130 0.59 -1.3
506,300 - PGA1_c05130 0.59 -1.3
506,374 - PGA1_c05130 0.64 -0.6
506,391 + PGA1_c05130 0.65 -0.6
506,416 + PGA1_c05130 0.67 -0.8
506,497 - PGA1_c05130 0.73 +0.9
506,508 + PGA1_c05130 0.73 -0.2
506,516 - PGA1_c05130 0.74 +0.8
506,518 + PGA1_c05130 0.74 -1.3
506,526 - PGA1_c05130 0.75 -0.0
506,526 - PGA1_c05130 0.75 +1.0
506,535 - PGA1_c05130 0.75 -0.1
506,684 + PGA1_c05130 0.86 -1.2
506,797 + -0.6
506,829 - -0.5
506,871 + +0.0
506,872 + -0.5
506,962 - +0.0
506,962 - -0.1
507,093 - PGA1_c05140 0.12 -1.1
507,193 + PGA1_c05140 0.20 -0.8
507,193 + PGA1_c05140 0.20 +0.0
507,193 + PGA1_c05140 0.20 +0.4
507,201 - PGA1_c05140 0.21 +0.6
507,263 - PGA1_c05140 0.26 -1.1
507,281 - PGA1_c05140 0.27 +1.3
507,457 + PGA1_c05140 0.41 +0.4
507,457 + PGA1_c05140 0.41 -0.3
507,457 + PGA1_c05140 0.41 +0.5
507,465 - PGA1_c05140 0.42 -1.2
507,518 + PGA1_c05140 0.46 -0.3
507,525 + PGA1_c05140 0.47 -1.2
507,528 - PGA1_c05140 0.47 +0.4
507,528 - PGA1_c05140 0.47 +0.0
507,533 - PGA1_c05140 0.47 +0.2
507,602 + PGA1_c05140 0.53 -1.4
507,620 - PGA1_c05140 0.54 +0.1
507,647 + PGA1_c05140 0.56 -0.7
507,656 + PGA1_c05140 0.57 -0.7
507,727 + PGA1_c05140 0.63 -0.2
507,734 + PGA1_c05140 0.63 +0.2
507,806 - PGA1_c05140 0.69 -0.2
507,806 - PGA1_c05140 0.69 +0.3
507,806 - PGA1_c05140 0.69 -2.0
507,815 + PGA1_c05140 0.70 -1.3
507,815 + PGA1_c05140 0.70 -1.6
507,869 - PGA1_c05140 0.74 -1.0
507,871 + PGA1_c05140 0.74 +0.8
507,905 - PGA1_c05140 0.77 -0.5
507,955 + PGA1_c05140 0.81 +0.3
507,955 + PGA1_c05140 0.81 +0.5
507,963 - PGA1_c05140 0.82 -0.6
507,965 + PGA1_c05140 0.82 -1.3
507,975 + PGA1_c05140 0.83 +1.1
508,007 - PGA1_c05140 0.85 +1.2
508,064 + PGA1_c05140 0.90 -0.8
508,100 - +0.1
508,123 + -0.1
508,151 - -1.1
508,204 + +0.3
508,205 + -2.6
508,212 + -0.6
508,233 + -2.8
508,233 + -1.7
508,233 + -0.6
508,233 + -2.0
508,241 - -1.2
508,306 + -1.3
508,344 + +0.9
508,352 - +0.0
508,352 - -0.0
508,354 + +1.2
508,407 + +0.0
508,421 - -0.4
508,421 - -1.0
508,421 - -1.2
508,422 + +0.5
508,422 + -0.1
508,469 - +0.4
508,505 + -0.0
508,505 + +0.0
508,520 - -0.5
508,589 + PGA1_c05150 0.10 +0.0
508,742 - PGA1_c05150 0.17 +1.0
508,752 - PGA1_c05150 0.17 +0.2
508,800 + PGA1_c05150 0.19 -1.7
508,808 - PGA1_c05150 0.20 -2.2
508,808 - PGA1_c05150 0.20 +0.1
508,825 + PGA1_c05150 0.20 -1.6
508,843 - PGA1_c05150 0.21 +0.2
508,843 - PGA1_c05150 0.21 -0.2
508,848 + PGA1_c05150 0.21 +0.6
508,856 - PGA1_c05150 0.22 +0.0
508,858 + PGA1_c05150 0.22 -1.8
508,866 - PGA1_c05150 0.22 +0.5
508,924 - PGA1_c05150 0.25 -0.3
508,924 - PGA1_c05150 0.25 +0.9
508,935 - PGA1_c05150 0.25 +3.1
508,937 - PGA1_c05150 0.25 +0.9
508,937 - PGA1_c05150 0.25 +0.2
508,962 + PGA1_c05150 0.26 -1.1
508,962 + PGA1_c05150 0.26 -1.5
508,962 + PGA1_c05150 0.26 -2.0
508,962 + PGA1_c05150 0.26 -0.4
508,962 + PGA1_c05150 0.26 +0.4
508,962 + PGA1_c05150 0.26 +0.0
508,988 + PGA1_c05150 0.28 -0.4
508,991 + PGA1_c05150 0.28 -0.6
509,026 - PGA1_c05150 0.29 -1.4
509,071 + PGA1_c05150 0.31 -1.0
509,076 + PGA1_c05150 0.31 +0.5
509,079 - PGA1_c05150 0.31 +0.4
509,084 - PGA1_c05150 0.32 +0.9
509,084 - PGA1_c05150 0.32 +0.6
509,084 - PGA1_c05150 0.32 +1.5
509,174 + PGA1_c05150 0.36 +0.7
509,182 - PGA1_c05150 0.36 -0.6
509,184 + PGA1_c05150 0.36 -1.4

Or see this region's nucleotide sequence