Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05050

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05040 and PGA1_c05050 are separated by 311 nucleotidesPGA1_c05050 and PGA1_c05060 are separated by 124 nucleotidesPGA1_c05060 and PGA1_c05070 are separated by 20 nucleotides PGA1_c05040: PGA1_c05040 - transposase, at 498,177 to 498,566 _c05040 PGA1_c05050: PGA1_c05050 - tRNA-Ser, at 498,878 to 498,967 _c05050 PGA1_c05060: PGA1_c05060 - putative short chain dehydrogenase, at 499,092 to 499,790 _c05060 PGA1_c05070: PGA1_c05070 - putative pyridoxal-phosphate-dependent aminotransferase, at 499,811 to 500,908 _c05070 Position (kb) 498 499Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 498.635 kb on - strandat 498.659 kb on + strandat 498.680 kb on + strandat 498.693 kb on - strandat 498.718 kb on - strandat 498.740 kb on + strandat 498.740 kb on + strandat 498.740 kb on + strandat 498.740 kb on + strandat 498.748 kb on - strandat 498.748 kb on - strandat 498.748 kb on - strandat 498.755 kb on + strandat 498.986 kb on + strandat 499.004 kb on - strandat 499.015 kb on + strandat 499.066 kb on - strandat 499.078 kb on + strandat 499.113 kb on + strandat 499.121 kb on - strandat 499.123 kb on + strandat 499.123 kb on + strandat 499.123 kb on + strandat 499.123 kb on + strandat 499.123 kb on + strandat 499.124 kb on + strandat 499.131 kb on - strandat 499.131 kb on - strandat 499.131 kb on - strandat 499.131 kb on - strandat 499.131 kb on - strandat 499.131 kb on - strandat 499.131 kb on - strandat 499.131 kb on - strandat 499.131 kb on - strandat 499.131 kb on - strandat 499.151 kb on + strandat 499.175 kb on - strand, within PGA1_c05060at 499.197 kb on + strand, within PGA1_c05060at 499.197 kb on + strand, within PGA1_c05060at 499.205 kb on - strand, within PGA1_c05060at 499.210 kb on - strand, within PGA1_c05060at 499.262 kb on - strand, within PGA1_c05060at 499.262 kb on - strand, within PGA1_c05060at 499.263 kb on + strand, within PGA1_c05060at 499.276 kb on - strand, within PGA1_c05060at 499.280 kb on + strand, within PGA1_c05060at 499.280 kb on + strand, within PGA1_c05060at 499.280 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.289 kb on + strand, within PGA1_c05060at 499.297 kb on - strand, within PGA1_c05060at 499.297 kb on - strand, within PGA1_c05060at 499.297 kb on - strand, within PGA1_c05060at 499.297 kb on - strand, within PGA1_c05060at 499.297 kb on - strand, within PGA1_c05060at 499.297 kb on - strand, within PGA1_c05060at 499.297 kb on - strand, within PGA1_c05060at 499.297 kb on - strand, within PGA1_c05060at 499.297 kb on - strand, within PGA1_c05060at 499.297 kb on - strand, within PGA1_c05060at 499.297 kb on - strand, within PGA1_c05060at 499.297 kb on - strand, within PGA1_c05060at 499.297 kb on - strand, within PGA1_c05060at 499.297 kb on - strand, within PGA1_c05060at 499.297 kb on - strand, within PGA1_c05060at 499.306 kb on + strand, within PGA1_c05060at 499.308 kb on + strand, within PGA1_c05060at 499.352 kb on + strand, within PGA1_c05060at 499.407 kb on - strand, within PGA1_c05060at 499.449 kb on + strand, within PGA1_c05060at 499.524 kb on + strand, within PGA1_c05060at 499.524 kb on + strand, within PGA1_c05060at 499.524 kb on + strand, within PGA1_c05060at 499.530 kb on + strand, within PGA1_c05060at 499.532 kb on - strand, within PGA1_c05060at 499.545 kb on + strand, within PGA1_c05060at 499.545 kb on + strand, within PGA1_c05060at 499.545 kb on + strand, within PGA1_c05060at 499.550 kb on + strand, within PGA1_c05060at 499.550 kb on + strand, within PGA1_c05060at 499.550 kb on + strand, within PGA1_c05060at 499.550 kb on + strand, within PGA1_c05060at 499.553 kb on - strand, within PGA1_c05060at 499.558 kb on - strand, within PGA1_c05060at 499.558 kb on - strand, within PGA1_c05060at 499.558 kb on - strand, within PGA1_c05060at 499.575 kb on + strand, within PGA1_c05060at 499.610 kb on + strand, within PGA1_c05060at 499.610 kb on + strand, within PGA1_c05060at 499.654 kb on - strand, within PGA1_c05060at 499.665 kb on + strand, within PGA1_c05060at 499.683 kb on - strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.685 kb on + strand, within PGA1_c05060at 499.690 kb on - strand, within PGA1_c05060at 499.693 kb on - strand, within PGA1_c05060at 499.693 kb on - strand, within PGA1_c05060at 499.693 kb on - strand, within PGA1_c05060at 499.693 kb on - strand, within PGA1_c05060at 499.693 kb on - strand, within PGA1_c05060at 499.693 kb on - strand, within PGA1_c05060at 499.693 kb on - strand, within PGA1_c05060at 499.693 kb on - strand, within PGA1_c05060at 499.693 kb on - strand, within PGA1_c05060at 499.693 kb on - strand, within PGA1_c05060at 499.693 kb on - strand, within PGA1_c05060at 499.730 kb on + strandat 499.738 kb on + strandat 499.738 kb on + strandat 499.738 kb on + strandat 499.738 kb on + strandat 499.738 kb on + strandat 499.746 kb on - strandat 499.783 kb on + strandat 499.801 kb on - strandat 499.809 kb on + strandat 499.830 kb on - strandat 499.865 kb on - strandat 499.867 kb on - strandat 499.867 kb on - strandat 499.867 kb on - strandat 499.872 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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498,635 - +0.6
498,659 + +0.1
498,680 + -0.8
498,693 - +0.1
498,718 - +0.3
498,740 + +1.0
498,740 + -0.7
498,740 + +1.9
498,740 + +0.0
498,748 - +0.6
498,748 - -0.7
498,748 - +0.0
498,755 + -0.7
498,986 + -1.7
499,004 - -0.1
499,015 + +0.2
499,066 - -0.6
499,078 + -0.4
499,113 + +0.8
499,121 - +0.6
499,123 + +0.2
499,123 + -0.9
499,123 + +0.6
499,123 + -0.4
499,123 + +0.2
499,124 + +0.4
499,131 - -0.5
499,131 - +1.4
499,131 - +2.2
499,131 - +0.8
499,131 - -1.5
499,131 - +1.5
499,131 - +0.4
499,131 - +0.2
499,131 - -1.4
499,131 - +0.6
499,151 + -0.5
499,175 - PGA1_c05060 0.12 +0.1
499,197 + PGA1_c05060 0.15 -0.6
499,197 + PGA1_c05060 0.15 -0.6
499,205 - PGA1_c05060 0.16 +0.2
499,210 - PGA1_c05060 0.17 +0.3
499,262 - PGA1_c05060 0.24 -2.6
499,262 - PGA1_c05060 0.24 +0.3
499,263 + PGA1_c05060 0.24 +0.6
499,276 - PGA1_c05060 0.26 -1.6
499,280 + PGA1_c05060 0.27 +0.3
499,280 + PGA1_c05060 0.27 -0.2
499,280 + PGA1_c05060 0.27 -1.1
499,289 + PGA1_c05060 0.28 -0.2
499,289 + PGA1_c05060 0.28 -0.4
499,289 + PGA1_c05060 0.28 -0.7
499,289 + PGA1_c05060 0.28 +0.5
499,289 + PGA1_c05060 0.28 +1.4
499,289 + PGA1_c05060 0.28 +0.1
499,289 + PGA1_c05060 0.28 -0.6
499,289 + PGA1_c05060 0.28 -0.5
499,289 + PGA1_c05060 0.28 -0.0
499,289 + PGA1_c05060 0.28 -0.1
499,289 + PGA1_c05060 0.28 -0.6
499,289 + PGA1_c05060 0.28 -0.6
499,289 + PGA1_c05060 0.28 -0.2
499,289 + PGA1_c05060 0.28 -0.8
499,289 + PGA1_c05060 0.28 -0.2
499,289 + PGA1_c05060 0.28 -1.7
499,289 + PGA1_c05060 0.28 -0.7
499,289 + PGA1_c05060 0.28 +0.5
499,289 + PGA1_c05060 0.28 -2.2
499,289 + PGA1_c05060 0.28 +1.1
499,289 + PGA1_c05060 0.28 -1.7
499,289 + PGA1_c05060 0.28 +0.4
499,289 + PGA1_c05060 0.28 -1.0
499,289 + PGA1_c05060 0.28 +0.1
499,289 + PGA1_c05060 0.28 -1.0
499,289 + PGA1_c05060 0.28 +0.0
499,289 + PGA1_c05060 0.28 +2.8
499,297 - PGA1_c05060 0.29 -0.8
499,297 - PGA1_c05060 0.29 -0.3
499,297 - PGA1_c05060 0.29 +1.2
499,297 - PGA1_c05060 0.29 +0.8
499,297 - PGA1_c05060 0.29 -1.0
499,297 - PGA1_c05060 0.29 +0.0
499,297 - PGA1_c05060 0.29 -1.1
499,297 - PGA1_c05060 0.29 +0.2
499,297 - PGA1_c05060 0.29 -1.0
499,297 - PGA1_c05060 0.29 +0.5
499,297 - PGA1_c05060 0.29 -0.4
499,297 - PGA1_c05060 0.29 -0.1
499,297 - PGA1_c05060 0.29 +1.0
499,297 - PGA1_c05060 0.29 -0.0
499,297 - PGA1_c05060 0.29 -0.5
499,306 + PGA1_c05060 0.31 -0.1
499,308 + PGA1_c05060 0.31 +0.3
499,352 + PGA1_c05060 0.37 -0.4
499,407 - PGA1_c05060 0.45 +0.1
499,449 + PGA1_c05060 0.51 -1.0
499,524 + PGA1_c05060 0.62 +0.1
499,524 + PGA1_c05060 0.62 +1.2
499,524 + PGA1_c05060 0.62 +1.1
499,530 + PGA1_c05060 0.63 +0.3
499,532 - PGA1_c05060 0.63 -0.0
499,545 + PGA1_c05060 0.65 +0.6
499,545 + PGA1_c05060 0.65 -0.0
499,545 + PGA1_c05060 0.65 -0.2
499,550 + PGA1_c05060 0.66 -0.7
499,550 + PGA1_c05060 0.66 +0.6
499,550 + PGA1_c05060 0.66 -0.4
499,550 + PGA1_c05060 0.66 -0.0
499,553 - PGA1_c05060 0.66 +0.6
499,558 - PGA1_c05060 0.67 +0.6
499,558 - PGA1_c05060 0.67 -0.3
499,558 - PGA1_c05060 0.67 -0.8
499,575 + PGA1_c05060 0.69 -1.7
499,610 + PGA1_c05060 0.74 -2.0
499,610 + PGA1_c05060 0.74 -0.4
499,654 - PGA1_c05060 0.80 -1.6
499,665 + PGA1_c05060 0.82 +0.1
499,683 - PGA1_c05060 0.85 -0.9
499,685 + PGA1_c05060 0.85 -1.0
499,685 + PGA1_c05060 0.85 -0.1
499,685 + PGA1_c05060 0.85 -0.7
499,685 + PGA1_c05060 0.85 -0.8
499,685 + PGA1_c05060 0.85 +0.1
499,685 + PGA1_c05060 0.85 +0.7
499,685 + PGA1_c05060 0.85 -1.1
499,685 + PGA1_c05060 0.85 +0.6
499,685 + PGA1_c05060 0.85 +0.4
499,685 + PGA1_c05060 0.85 -0.2
499,685 + PGA1_c05060 0.85 -0.5
499,685 + PGA1_c05060 0.85 +0.7
499,685 + PGA1_c05060 0.85 -1.0
499,685 + PGA1_c05060 0.85 -3.3
499,685 + PGA1_c05060 0.85 -0.5
499,685 + PGA1_c05060 0.85 +0.5
499,685 + PGA1_c05060 0.85 +0.5
499,685 + PGA1_c05060 0.85 -0.5
499,685 + PGA1_c05060 0.85 -0.6
499,685 + PGA1_c05060 0.85 +0.0
499,690 - PGA1_c05060 0.86 +0.5
499,693 - PGA1_c05060 0.86 -1.0
499,693 - PGA1_c05060 0.86 +1.0
499,693 - PGA1_c05060 0.86 -0.8
499,693 - PGA1_c05060 0.86 +0.8
499,693 - PGA1_c05060 0.86 -0.9
499,693 - PGA1_c05060 0.86 -1.8
499,693 - PGA1_c05060 0.86 -1.3
499,693 - PGA1_c05060 0.86 +0.5
499,693 - PGA1_c05060 0.86 +0.6
499,693 - PGA1_c05060 0.86 -2.1
499,693 - PGA1_c05060 0.86 +1.0
499,730 + +2.2
499,738 + -0.6
499,738 + +1.0
499,738 + -1.1
499,738 + -0.5
499,738 + -1.3
499,746 - -0.8
499,783 + -0.4
499,801 - -1.0
499,809 + -1.6
499,830 - +0.2
499,865 - -1.2
499,867 - -2.7
499,867 - +0.6
499,867 - -0.7
499,872 - -1.8

Or see this region's nucleotide sequence