Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00050 and PGA1_65p00060 overlap by 4 nucleotides PGA1_65p00060 and PGA1_65p00070 are separated by 951 nucleotides
PGA1_65p00050: PGA1_65p00050 - hypothetical protein, at 7,427 to 8,269
_65p00050
PGA1_65p00060: PGA1_65p00060 - putative regulatory protein, LuxR family, at 8,266 to 9,465
_65p00060
PGA1_65p00070: PGA1_65p00070 - putative regulatory protein, LuxR family, at 10,417 to 11,217
_65p00070
Position (kb)
8
9
10 Strain fitness (log2 ratio)
-1
0
1
2
3 at 7.325 kb on - strand at 7.475 kb on + strand at 7.492 kb on - strand at 7.573 kb on + strand, within PGA1_65p00050 at 8.058 kb on - strand, within PGA1_65p00050 at 8.060 kb on + strand, within PGA1_65p00050 at 8.273 kb on + strand at 8.365 kb on + strand at 8.670 kb on - strand, within PGA1_65p00060 at 8.832 kb on + strand, within PGA1_65p00060 at 9.052 kb on + strand, within PGA1_65p00060 at 9.055 kb on + strand, within PGA1_65p00060 at 9.081 kb on + strand, within PGA1_65p00060 at 9.239 kb on + strand, within PGA1_65p00060 at 9.247 kb on - strand, within PGA1_65p00060 at 9.258 kb on + strand, within PGA1_65p00060 at 9.276 kb on - strand, within PGA1_65p00060 at 9.276 kb on - strand, within PGA1_65p00060 at 9.311 kb on - strand, within PGA1_65p00060 at 9.347 kb on + strand at 9.375 kb on - strand at 9.449 kb on + strand at 9.459 kb on + strand at 9.546 kb on - strand at 9.867 kb on + strand at 9.928 kb on + strand at 9.985 kb on - strand at 10.013 kb on - strand at 10.062 kb on - strand at 10.119 kb on + strand at 10.121 kb on + strand at 10.299 kb on - strand at 10.345 kb on + strand at 10.461 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 7,325 - -1.3 7,475 + -1.0 7,492 - -0.5 7,573 + PGA1_65p00050 0.17 +2.9 8,058 - PGA1_65p00050 0.75 +0.6 8,060 + PGA1_65p00050 0.75 +1.9 8,273 + -0.7 8,365 + +0.3 8,670 - PGA1_65p00060 0.34 -1.7 8,832 + PGA1_65p00060 0.47 +2.3 9,052 + PGA1_65p00060 0.66 -1.0 9,055 + PGA1_65p00060 0.66 +0.3 9,081 + PGA1_65p00060 0.68 +1.5 9,239 + PGA1_65p00060 0.81 -1.7 9,247 - PGA1_65p00060 0.82 +2.4 9,258 + PGA1_65p00060 0.83 -0.5 9,276 - PGA1_65p00060 0.84 +1.9 9,276 - PGA1_65p00060 0.84 +1.3 9,311 - PGA1_65p00060 0.87 +1.9 9,347 + -0.7 9,375 - +0.7 9,449 + +0.7 9,459 + +0.3 9,546 - -1.0 9,867 + -0.7 9,928 + +0.6 9,985 - -0.5 10,013 - +0.3 10,062 - -1.3 10,119 + +0.1 10,121 + -0.0 10,299 - -0.3 10,345 + +2.6 10,461 - -0.7
Or see this region's nucleotide sequence