Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03960

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03950 and PGA1_c03960 are separated by 0 nucleotidesPGA1_c03960 and PGA1_c03970 are separated by 198 nucleotides PGA1_c03950: PGA1_c03950 - putative permease protein, at 381,663 to 382,757 _c03950 PGA1_c03960: PGA1_c03960 - ribose import ATP-binding protein RbsA, at 382,758 to 384,287 _c03960 PGA1_c03970: PGA1_c03970 - putative lipoprotein, at 384,486 to 385,481 _c03970 Position (kb) 382 383 384 385Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 381.854 kb on + strand, within PGA1_c03950at 381.881 kb on - strand, within PGA1_c03950at 381.895 kb on - strand, within PGA1_c03950at 381.961 kb on - strand, within PGA1_c03950at 382.012 kb on - strand, within PGA1_c03950at 382.250 kb on - strand, within PGA1_c03950at 382.314 kb on - strand, within PGA1_c03950at 382.345 kb on - strand, within PGA1_c03950at 382.359 kb on - strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.390 kb on + strand, within PGA1_c03950at 382.413 kb on - strand, within PGA1_c03950at 382.475 kb on + strand, within PGA1_c03950at 382.483 kb on - strand, within PGA1_c03950at 382.488 kb on + strand, within PGA1_c03950at 382.494 kb on + strand, within PGA1_c03950at 382.494 kb on + strand, within PGA1_c03950at 382.543 kb on + strand, within PGA1_c03950at 382.546 kb on - strand, within PGA1_c03950at 382.576 kb on + strand, within PGA1_c03950at 382.588 kb on + strand, within PGA1_c03950at 382.599 kb on + strand, within PGA1_c03950at 382.606 kb on + strand, within PGA1_c03950at 382.674 kb on + strandat 382.704 kb on - strandat 382.708 kb on - strandat 382.746 kb on + strandat 382.777 kb on + strandat 382.783 kb on + strandat 382.783 kb on + strandat 382.783 kb on + strandat 382.791 kb on - strandat 383.012 kb on + strand, within PGA1_c03960at 383.132 kb on + strand, within PGA1_c03960at 383.140 kb on - strand, within PGA1_c03960at 383.178 kb on + strand, within PGA1_c03960at 383.178 kb on + strand, within PGA1_c03960at 383.180 kb on + strand, within PGA1_c03960at 383.188 kb on - strand, within PGA1_c03960at 383.235 kb on + strand, within PGA1_c03960at 383.243 kb on - strand, within PGA1_c03960at 383.243 kb on - strand, within PGA1_c03960at 383.352 kb on + strand, within PGA1_c03960at 383.355 kb on - strand, within PGA1_c03960at 383.367 kb on - strand, within PGA1_c03960at 383.367 kb on - strand, within PGA1_c03960at 383.406 kb on + strand, within PGA1_c03960at 383.414 kb on - strand, within PGA1_c03960at 383.476 kb on + strand, within PGA1_c03960at 383.476 kb on + strand, within PGA1_c03960at 383.484 kb on - strand, within PGA1_c03960at 383.494 kb on + strand, within PGA1_c03960at 383.502 kb on - strand, within PGA1_c03960at 383.556 kb on + strand, within PGA1_c03960at 383.564 kb on + strand, within PGA1_c03960at 383.572 kb on - strand, within PGA1_c03960at 383.631 kb on + strand, within PGA1_c03960at 383.639 kb on - strand, within PGA1_c03960at 383.687 kb on + strand, within PGA1_c03960at 383.695 kb on - strand, within PGA1_c03960at 383.695 kb on - strand, within PGA1_c03960at 383.695 kb on - strand, within PGA1_c03960at 383.697 kb on + strand, within PGA1_c03960at 383.730 kb on - strand, within PGA1_c03960at 383.733 kb on + strand, within PGA1_c03960at 383.748 kb on - strand, within PGA1_c03960at 383.756 kb on - strand, within PGA1_c03960at 383.779 kb on + strand, within PGA1_c03960at 383.814 kb on + strand, within PGA1_c03960at 383.943 kb on - strand, within PGA1_c03960at 383.958 kb on - strand, within PGA1_c03960at 384.016 kb on + strand, within PGA1_c03960at 384.024 kb on - strand, within PGA1_c03960at 384.024 kb on - strand, within PGA1_c03960at 384.025 kb on - strand, within PGA1_c03960at 384.118 kb on + strand, within PGA1_c03960at 384.126 kb on - strand, within PGA1_c03960at 384.130 kb on + strand, within PGA1_c03960at 384.139 kb on + strandat 384.157 kb on - strandat 384.200 kb on + strandat 384.208 kb on - strandat 384.222 kb on - strandat 384.228 kb on + strandat 384.228 kb on + strandat 384.229 kb on + strandat 384.239 kb on + strandat 384.239 kb on + strandat 384.239 kb on + strandat 384.239 kb on + strandat 384.239 kb on + strandat 384.239 kb on + strandat 384.242 kb on - strandat 384.247 kb on - strandat 384.293 kb on - strandat 384.303 kb on - strandat 384.304 kb on - strandat 384.325 kb on + strandat 384.328 kb on - strandat 384.472 kb on + strandat 384.519 kb on + strandat 384.525 kb on + strandat 384.533 kb on - strandat 384.572 kb on - strandat 384.640 kb on + strand, within PGA1_c03970at 384.648 kb on - strand, within PGA1_c03970at 384.648 kb on - strand, within PGA1_c03970at 384.659 kb on - strand, within PGA1_c03970at 384.668 kb on - strand, within PGA1_c03970at 384.677 kb on + strand, within PGA1_c03970at 384.685 kb on - strand, within PGA1_c03970at 384.698 kb on + strand, within PGA1_c03970at 384.736 kb on + strand, within PGA1_c03970at 384.857 kb on + strand, within PGA1_c03970at 384.890 kb on + strand, within PGA1_c03970at 384.891 kb on - strand, within PGA1_c03970at 384.897 kb on + strand, within PGA1_c03970at 384.898 kb on - strand, within PGA1_c03970at 384.898 kb on - strand, within PGA1_c03970at 384.898 kb on - strand, within PGA1_c03970at 384.955 kb on + strand, within PGA1_c03970at 385.035 kb on + strand, within PGA1_c03970at 385.048 kb on - strand, within PGA1_c03970at 385.089 kb on + strand, within PGA1_c03970at 385.097 kb on - strand, within PGA1_c03970at 385.133 kb on - strand, within PGA1_c03970at 385.133 kb on - strand, within PGA1_c03970at 385.278 kb on - strand, within PGA1_c03970

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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381,854 + PGA1_c03950 0.17 +0.2
381,881 - PGA1_c03950 0.20 +0.0
381,895 - PGA1_c03950 0.21 -0.0
381,961 - PGA1_c03950 0.27 +1.1
382,012 - PGA1_c03950 0.32 +0.1
382,250 - PGA1_c03950 0.54 -1.9
382,314 - PGA1_c03950 0.59 -1.1
382,345 - PGA1_c03950 0.62 +0.0
382,359 - PGA1_c03950 0.64 +0.6
382,390 + PGA1_c03950 0.66 -0.2
382,390 + PGA1_c03950 0.66 -1.4
382,390 + PGA1_c03950 0.66 -0.6
382,390 + PGA1_c03950 0.66 -0.7
382,390 + PGA1_c03950 0.66 -1.5
382,390 + PGA1_c03950 0.66 +0.5
382,390 + PGA1_c03950 0.66 -0.4
382,390 + PGA1_c03950 0.66 -0.6
382,390 + PGA1_c03950 0.66 +1.4
382,413 - PGA1_c03950 0.68 +0.1
382,475 + PGA1_c03950 0.74 -1.3
382,483 - PGA1_c03950 0.75 +0.2
382,488 + PGA1_c03950 0.75 -0.7
382,494 + PGA1_c03950 0.76 +1.5
382,494 + PGA1_c03950 0.76 -0.3
382,543 + PGA1_c03950 0.80 +0.5
382,546 - PGA1_c03950 0.81 +0.4
382,576 + PGA1_c03950 0.83 +0.6
382,588 + PGA1_c03950 0.84 -0.8
382,599 + PGA1_c03950 0.85 -0.0
382,606 + PGA1_c03950 0.86 +0.6
382,674 + -1.0
382,704 - -2.5
382,708 - +2.0
382,746 + +0.3
382,777 + +0.7
382,783 + -0.8
382,783 + -3.4
382,783 + +0.2
382,791 - -0.4
383,012 + PGA1_c03960 0.17 +1.2
383,132 + PGA1_c03960 0.24 -1.0
383,140 - PGA1_c03960 0.25 -0.6
383,178 + PGA1_c03960 0.27 -0.8
383,178 + PGA1_c03960 0.27 -1.2
383,180 + PGA1_c03960 0.28 +0.3
383,188 - PGA1_c03960 0.28 +0.0
383,235 + PGA1_c03960 0.31 +0.7
383,243 - PGA1_c03960 0.32 -0.0
383,243 - PGA1_c03960 0.32 -1.5
383,352 + PGA1_c03960 0.39 +1.5
383,355 - PGA1_c03960 0.39 +0.1
383,367 - PGA1_c03960 0.40 +1.0
383,367 - PGA1_c03960 0.40 +0.2
383,406 + PGA1_c03960 0.42 -0.4
383,414 - PGA1_c03960 0.43 -0.8
383,476 + PGA1_c03960 0.47 +0.9
383,476 + PGA1_c03960 0.47 -0.9
383,484 - PGA1_c03960 0.47 +0.6
383,494 + PGA1_c03960 0.48 -0.1
383,502 - PGA1_c03960 0.49 -1.6
383,556 + PGA1_c03960 0.52 +0.4
383,564 + PGA1_c03960 0.53 +0.6
383,572 - PGA1_c03960 0.53 -0.1
383,631 + PGA1_c03960 0.57 -0.0
383,639 - PGA1_c03960 0.58 +0.3
383,687 + PGA1_c03960 0.61 -1.3
383,695 - PGA1_c03960 0.61 -1.2
383,695 - PGA1_c03960 0.61 -1.1
383,695 - PGA1_c03960 0.61 -2.0
383,697 + PGA1_c03960 0.61 +0.2
383,730 - PGA1_c03960 0.64 +0.5
383,733 + PGA1_c03960 0.64 +1.2
383,748 - PGA1_c03960 0.65 +1.6
383,756 - PGA1_c03960 0.65 -0.4
383,779 + PGA1_c03960 0.67 +0.6
383,814 + PGA1_c03960 0.69 -0.9
383,943 - PGA1_c03960 0.77 +0.6
383,958 - PGA1_c03960 0.78 -0.3
384,016 + PGA1_c03960 0.82 +1.5
384,024 - PGA1_c03960 0.83 -0.9
384,024 - PGA1_c03960 0.83 +0.9
384,025 - PGA1_c03960 0.83 +0.6
384,118 + PGA1_c03960 0.89 +0.6
384,126 - PGA1_c03960 0.89 +0.3
384,130 + PGA1_c03960 0.90 -0.5
384,139 + -0.3
384,157 - -0.1
384,200 + -3.6
384,208 - -0.1
384,222 - -1.2
384,228 + +0.1
384,228 + -0.1
384,229 + -2.0
384,239 + +1.6
384,239 + -0.9
384,239 + +0.7
384,239 + +2.0
384,239 + +1.4
384,239 + -1.3
384,242 - -1.8
384,247 - +0.5
384,293 - -0.4
384,303 - -0.6
384,304 - -0.8
384,325 + +0.2
384,328 - -0.9
384,472 + +0.6
384,519 + -1.1
384,525 + -1.1
384,533 - -0.1
384,572 - +0.6
384,640 + PGA1_c03970 0.15 -2.3
384,648 - PGA1_c03970 0.16 +0.5
384,648 - PGA1_c03970 0.16 +0.7
384,659 - PGA1_c03970 0.17 -0.6
384,668 - PGA1_c03970 0.18 -0.2
384,677 + PGA1_c03970 0.19 +0.2
384,685 - PGA1_c03970 0.20 +0.5
384,698 + PGA1_c03970 0.21 -0.0
384,736 + PGA1_c03970 0.25 +0.1
384,857 + PGA1_c03970 0.37 +0.5
384,890 + PGA1_c03970 0.41 -0.5
384,891 - PGA1_c03970 0.41 -1.3
384,897 + PGA1_c03970 0.41 -0.8
384,898 - PGA1_c03970 0.41 +0.6
384,898 - PGA1_c03970 0.41 +0.0
384,898 - PGA1_c03970 0.41 +1.5
384,955 + PGA1_c03970 0.47 -1.5
385,035 + PGA1_c03970 0.55 +0.8
385,048 - PGA1_c03970 0.56 +0.8
385,089 + PGA1_c03970 0.61 -0.9
385,097 - PGA1_c03970 0.61 -0.6
385,133 - PGA1_c03970 0.65 +0.3
385,133 - PGA1_c03970 0.65 +0.2
385,278 - PGA1_c03970 0.80 -0.1

Or see this region's nucleotide sequence