Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00090 and PGA1_262p00100 are separated by 142 nucleotides PGA1_262p00100 and PGA1_262p00110 are separated by 4 nucleotides PGA1_262p00110 and PGA1_262p00120 are separated by 3 nucleotides
PGA1_262p00090: PGA1_262p00090 - putative exopolysaccharide biosynthesis transport protein, at 10,062 to 12,173
_262p00090
PGA1_262p00100: PGA1_262p00100 - putative glycosyl transferase, at 12,316 to 13,404
_262p00100
PGA1_262p00110: PGA1_262p00110 - putative glycosyl transferase, at 13,409 to 14,362
_262p00110
PGA1_262p00120: PGA1_262p00120 - succinoglycan biosynthesis protein ExoL, at 14,366 to 15,547
_262p00120
Position (kb) 12
13
14 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 11.352 kb on - strand, within PGA1_262p00090 at 11.580 kb on - strand, within PGA1_262p00090 at 11.610 kb on + strand, within PGA1_262p00090 at 11.646 kb on + strand, within PGA1_262p00090 at 11.654 kb on - strand, within PGA1_262p00090 at 11.843 kb on + strand, within PGA1_262p00090 at 11.875 kb on - strand, within PGA1_262p00090 at 11.877 kb on + strand, within PGA1_262p00090 at 12.103 kb on - strand at 12.157 kb on - strand at 12.179 kb on + strand at 12.187 kb on - strand at 12.296 kb on - strand at 12.554 kb on + strand, within PGA1_262p00100 at 12.644 kb on + strand, within PGA1_262p00100 at 12.644 kb on + strand, within PGA1_262p00100 at 12.853 kb on + strand, within PGA1_262p00100 at 12.860 kb on - strand, within PGA1_262p00100 at 12.942 kb on + strand, within PGA1_262p00100 at 13.045 kb on + strand, within PGA1_262p00100 at 13.052 kb on + strand, within PGA1_262p00100 at 13.200 kb on + strand, within PGA1_262p00100 at 13.200 kb on + strand, within PGA1_262p00100 at 13.208 kb on - strand, within PGA1_262p00100 at 13.220 kb on - strand, within PGA1_262p00100 at 13.280 kb on + strand, within PGA1_262p00100 at 13.280 kb on + strand, within PGA1_262p00100 at 13.285 kb on + strand, within PGA1_262p00100 at 13.293 kb on - strand, within PGA1_262p00100 at 13.314 kb on - strand at 13.314 kb on - strand at 13.548 kb on + strand, within PGA1_262p00110 at 13.600 kb on - strand, within PGA1_262p00110 at 13.750 kb on - strand, within PGA1_262p00110 at 13.750 kb on - strand, within PGA1_262p00110 at 13.796 kb on - strand, within PGA1_262p00110 at 13.825 kb on - strand, within PGA1_262p00110 at 13.844 kb on + strand, within PGA1_262p00110 at 13.854 kb on + strand, within PGA1_262p00110 at 13.854 kb on + strand, within PGA1_262p00110 at 13.854 kb on + strand, within PGA1_262p00110 at 13.864 kb on + strand, within PGA1_262p00110 at 13.889 kb on + strand, within PGA1_262p00110 at 13.935 kb on - strand, within PGA1_262p00110 at 13.985 kb on + strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.039 kb on - strand, within PGA1_262p00110 at 14.111 kb on + strand, within PGA1_262p00110 at 14.111 kb on + strand, within PGA1_262p00110 at 14.119 kb on - strand, within PGA1_262p00110 at 14.273 kb on - strand at 14.286 kb on + strand at 14.356 kb on + strand at 14.396 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 11,352 - PGA1_262p00090 0.61 -0.1 11,580 - PGA1_262p00090 0.72 -0.1 11,610 + PGA1_262p00090 0.73 +0.2 11,646 + PGA1_262p00090 0.75 +0.4 11,654 - PGA1_262p00090 0.75 +0.1 11,843 + PGA1_262p00090 0.84 -3.2 11,875 - PGA1_262p00090 0.86 -2.9 11,877 + PGA1_262p00090 0.86 -1.9 12,103 - -0.1 12,157 - +0.8 12,179 + -1.7 12,187 - -1.1 12,296 - -0.1 12,554 + PGA1_262p00100 0.22 -1.7 12,644 + PGA1_262p00100 0.30 -0.9 12,644 + PGA1_262p00100 0.30 +0.5 12,853 + PGA1_262p00100 0.49 +2.4 12,860 - PGA1_262p00100 0.50 -0.8 12,942 + PGA1_262p00100 0.57 +0.3 13,045 + PGA1_262p00100 0.67 +0.1 13,052 + PGA1_262p00100 0.68 +0.2 13,200 + PGA1_262p00100 0.81 +0.7 13,200 + PGA1_262p00100 0.81 +0.6 13,208 - PGA1_262p00100 0.82 +1.3 13,220 - PGA1_262p00100 0.83 +2.9 13,280 + PGA1_262p00100 0.89 +1.1 13,280 + PGA1_262p00100 0.89 +1.7 13,285 + PGA1_262p00100 0.89 +0.4 13,293 - PGA1_262p00100 0.90 +1.3 13,314 - -0.4 13,314 - -0.7 13,548 + PGA1_262p00110 0.15 -0.1 13,600 - PGA1_262p00110 0.20 +0.7 13,750 - PGA1_262p00110 0.36 +0.5 13,750 - PGA1_262p00110 0.36 -1.3 13,796 - PGA1_262p00110 0.41 +0.6 13,825 - PGA1_262p00110 0.44 +2.5 13,844 + PGA1_262p00110 0.46 -0.1 13,854 + PGA1_262p00110 0.47 -1.4 13,854 + PGA1_262p00110 0.47 -0.1 13,854 + PGA1_262p00110 0.47 +1.3 13,864 + PGA1_262p00110 0.48 -0.1 13,889 + PGA1_262p00110 0.50 +0.7 13,935 - PGA1_262p00110 0.55 +2.9 13,985 + PGA1_262p00110 0.60 -2.2 14,039 - PGA1_262p00110 0.66 -0.5 14,039 - PGA1_262p00110 0.66 -0.1 14,039 - PGA1_262p00110 0.66 +1.8 14,039 - PGA1_262p00110 0.66 -1.4 14,111 + PGA1_262p00110 0.74 -0.8 14,111 + PGA1_262p00110 0.74 -0.6 14,119 - PGA1_262p00110 0.74 +0.4 14,273 - -0.8 14,286 + +0.4 14,356 + -0.5 14,396 - -1.1
Or see this region's nucleotide sequence