Experiment: Parabanic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0034 and Psest_0035 are separated by 5 nucleotides Psest_0035 and Psest_0036 overlap by 22 nucleotides
Psest_0034: Psest_0034 - Outer membrane receptor proteins, mostly Fe transport, at 33,359 to 35,407
_0034
Psest_0035: Psest_0035 - hypothetical protein, at 35,413 to 36,939
_0035
Psest_0036: Psest_0036 - Predicted membrane protein, at 36,918 to 38,621
_0036
Position (kb) 35
36
37 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 34.413 kb on - strand, within Psest_0034 at 34.413 kb on - strand, within Psest_0034 at 34.527 kb on - strand, within Psest_0034 at 34.527 kb on - strand, within Psest_0034 at 34.535 kb on + strand, within Psest_0034 at 34.536 kb on - strand, within Psest_0034 at 34.544 kb on + strand, within Psest_0034 at 34.545 kb on - strand, within Psest_0034 at 34.649 kb on + strand, within Psest_0034 at 34.700 kb on + strand, within Psest_0034 at 34.700 kb on + strand, within Psest_0034 at 34.700 kb on + strand, within Psest_0034 at 34.700 kb on + strand, within Psest_0034 at 34.701 kb on - strand, within Psest_0034 at 34.701 kb on - strand, within Psest_0034 at 34.701 kb on - strand, within Psest_0034 at 34.701 kb on - strand, within Psest_0034 at 34.701 kb on - strand, within Psest_0034 at 34.709 kb on - strand, within Psest_0034 at 34.727 kb on + strand, within Psest_0034 at 34.775 kb on + strand, within Psest_0034 at 34.776 kb on - strand, within Psest_0034 at 35.118 kb on - strand, within Psest_0034 at 35.118 kb on - strand, within Psest_0034 at 35.135 kb on + strand, within Psest_0034 at 35.136 kb on - strand, within Psest_0034 at 35.136 kb on - strand, within Psest_0034 at 35.189 kb on + strand, within Psest_0034 at 35.190 kb on - strand, within Psest_0034 at 35.192 kb on + strand, within Psest_0034 at 35.193 kb on - strand, within Psest_0034 at 35.193 kb on - strand, within Psest_0034 at 35.222 kb on + strand at 35.223 kb on - strand at 35.223 kb on - strand at 35.232 kb on - strand at 35.259 kb on - strand at 35.318 kb on + strand at 35.318 kb on + strand at 35.318 kb on + strand at 35.318 kb on + strand at 35.319 kb on - strand at 35.324 kb on + strand at 35.324 kb on + strand at 35.324 kb on + strand at 35.325 kb on - strand at 35.325 kb on - strand at 35.325 kb on - strand at 35.325 kb on - strand at 35.325 kb on - strand at 35.325 kb on - strand at 35.325 kb on - strand at 35.381 kb on + strand at 35.381 kb on + strand at 35.381 kb on + strand at 35.381 kb on + strand at 35.382 kb on - strand at 35.382 kb on - strand at 35.382 kb on - strand at 35.382 kb on - strand at 35.382 kb on - strand at 35.423 kb on - strand at 35.428 kb on + strand at 35.429 kb on - strand at 35.899 kb on + strand, within Psest_0035 at 35.899 kb on + strand, within Psest_0035 at 35.899 kb on + strand, within Psest_0035 at 35.899 kb on + strand, within Psest_0035 at 35.899 kb on + strand, within Psest_0035 at 35.900 kb on - strand, within Psest_0035 at 35.900 kb on - strand, within Psest_0035 at 35.900 kb on - strand, within Psest_0035 at 36.040 kb on + strand, within Psest_0035 at 36.041 kb on - strand, within Psest_0035 at 36.041 kb on - strand, within Psest_0035 at 36.303 kb on - strand, within Psest_0035 at 36.303 kb on - strand, within Psest_0035 at 36.410 kb on - strand, within Psest_0035 at 36.574 kb on + strand, within Psest_0035 at 36.575 kb on - strand, within Psest_0035 at 36.575 kb on - strand, within Psest_0035 at 36.575 kb on - strand, within Psest_0035 at 36.578 kb on - strand, within Psest_0035 at 36.601 kb on + strand, within Psest_0035 at 36.601 kb on + strand, within Psest_0035 at 36.601 kb on + strand, within Psest_0035 at 36.602 kb on - strand, within Psest_0035 at 37.064 kb on - strand at 37.064 kb on - strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.078 kb on + strand at 37.079 kb on - strand at 37.079 kb on - strand at 37.262 kb on - strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.270 kb on + strand, within Psest_0036 at 37.271 kb on - strand, within Psest_0036 at 37.271 kb on - strand, within Psest_0036 at 37.271 kb on - strand, within Psest_0036 at 37.531 kb on + strand, within Psest_0036 at 37.531 kb on + strand, within Psest_0036 at 37.532 kb on - strand, within Psest_0036 at 37.532 kb on - strand, within Psest_0036 at 37.532 kb on - strand, within Psest_0036 at 37.571 kb on - strand, within Psest_0036 at 37.576 kb on + strand, within Psest_0036 at 37.577 kb on - strand, within Psest_0036 at 37.615 kb on + strand, within Psest_0036 at 37.615 kb on + strand, within Psest_0036 at 37.654 kb on + strand, within Psest_0036 at 37.654 kb on + strand, within Psest_0036 at 37.654 kb on + strand, within Psest_0036 at 37.655 kb on - strand, within Psest_0036 at 37.655 kb on - strand, within Psest_0036 at 37.660 kb on + strand, within Psest_0036 at 37.855 kb on + strand, within Psest_0036 at 37.855 kb on + strand, within Psest_0036 at 37.855 kb on + strand, within Psest_0036
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (N) remove 34,413 - Psest_0034 0.51 -1.1 34,413 - Psest_0034 0.51 +2.0 34,527 - Psest_0034 0.57 +0.4 34,527 - Psest_0034 0.57 -0.5 34,535 + Psest_0034 0.57 +0.5 34,536 - Psest_0034 0.57 +2.4 34,544 + Psest_0034 0.58 +0.0 34,545 - Psest_0034 0.58 -0.1 34,649 + Psest_0034 0.63 -0.4 34,700 + Psest_0034 0.65 +0.2 34,700 + Psest_0034 0.65 -1.4 34,700 + Psest_0034 0.65 +0.2 34,700 + Psest_0034 0.65 +1.2 34,701 - Psest_0034 0.65 +0.1 34,701 - Psest_0034 0.65 -0.5 34,701 - Psest_0034 0.65 -0.1 34,701 - Psest_0034 0.65 +0.4 34,701 - Psest_0034 0.65 -0.8 34,709 - Psest_0034 0.66 +1.6 34,727 + Psest_0034 0.67 -1.6 34,775 + Psest_0034 0.69 +1.2 34,776 - Psest_0034 0.69 +2.2 35,118 - Psest_0034 0.86 +4.0 35,118 - Psest_0034 0.86 -0.5 35,135 + Psest_0034 0.87 +1.8 35,136 - Psest_0034 0.87 -1.6 35,136 - Psest_0034 0.87 +0.8 35,189 + Psest_0034 0.89 +0.2 35,190 - Psest_0034 0.89 +0.9 35,192 + Psest_0034 0.89 +0.2 35,193 - Psest_0034 0.90 +0.4 35,193 - Psest_0034 0.90 -0.2 35,222 + +0.2 35,223 - +0.8 35,223 - +0.7 35,232 - -0.8 35,259 - -0.4 35,318 + -0.2 35,318 + -0.4 35,318 + +1.2 35,318 + +1.7 35,319 - +0.9 35,324 + +0.2 35,324 + +0.9 35,324 + -1.8 35,325 - -0.2 35,325 - +0.2 35,325 - -0.4 35,325 - +1.5 35,325 - +0.4 35,325 - +0.6 35,325 - +0.2 35,381 + +0.3 35,381 + +1.2 35,381 + +1.2 35,381 + +0.9 35,382 - +0.6 35,382 - -0.4 35,382 - +0.4 35,382 - -1.4 35,382 - -0.4 35,423 - -0.1 35,428 + -1.2 35,429 - +0.9 35,899 + Psest_0035 0.32 +1.3 35,899 + Psest_0035 0.32 +1.5 35,899 + Psest_0035 0.32 +2.2 35,899 + Psest_0035 0.32 -0.7 35,899 + Psest_0035 0.32 +0.8 35,900 - Psest_0035 0.32 -0.8 35,900 - Psest_0035 0.32 -1.1 35,900 - Psest_0035 0.32 -0.4 36,040 + Psest_0035 0.41 +1.2 36,041 - Psest_0035 0.41 -0.4 36,041 - Psest_0035 0.41 +0.6 36,303 - Psest_0035 0.58 +0.2 36,303 - Psest_0035 0.58 +0.3 36,410 - Psest_0035 0.65 +1.2 36,574 + Psest_0035 0.76 +0.2 36,575 - Psest_0035 0.76 -0.4 36,575 - Psest_0035 0.76 +2.2 36,575 - Psest_0035 0.76 +1.2 36,578 - Psest_0035 0.76 -0.4 36,601 + Psest_0035 0.78 +0.5 36,601 + Psest_0035 0.78 +1.5 36,601 + Psest_0035 0.78 +1.7 36,602 - Psest_0035 0.78 -1.8 37,064 - +1.2 37,064 - +0.2 37,078 + +0.2 37,078 + -0.6 37,078 + +2.0 37,078 + +0.8 37,078 + +0.4 37,078 + -1.6 37,078 + +1.5 37,078 + +0.2 37,079 - +0.8 37,079 - +0.7 37,262 - Psest_0036 0.20 -0.8 37,270 + Psest_0036 0.21 +0.7 37,270 + Psest_0036 0.21 +1.8 37,270 + Psest_0036 0.21 -0.6 37,270 + Psest_0036 0.21 -1.8 37,270 + Psest_0036 0.21 +0.5 37,270 + Psest_0036 0.21 +1.0 37,271 - Psest_0036 0.21 -1.1 37,271 - Psest_0036 0.21 +0.5 37,271 - Psest_0036 0.21 +1.9 37,531 + Psest_0036 0.36 -1.6 37,531 + Psest_0036 0.36 +0.6 37,532 - Psest_0036 0.36 +2.2 37,532 - Psest_0036 0.36 +0.1 37,532 - Psest_0036 0.36 +1.6 37,571 - Psest_0036 0.38 -1.0 37,576 + Psest_0036 0.39 +0.2 37,577 - Psest_0036 0.39 +1.2 37,615 + Psest_0036 0.41 -0.6 37,615 + Psest_0036 0.41 +1.6 37,654 + Psest_0036 0.43 +0.9 37,654 + Psest_0036 0.43 -1.7 37,654 + Psest_0036 0.43 +1.2 37,655 - Psest_0036 0.43 +0.4 37,655 - Psest_0036 0.43 -0.2 37,660 + Psest_0036 0.44 -2.4 37,855 + Psest_0036 0.55 +1.2 37,855 + Psest_0036 0.55 +0.3 37,855 + Psest_0036 0.55 +1.1
Or see this region's nucleotide sequence