Strain Fitness in Marinobacter adhaerens HP15 around HP15_2516

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2514 and HP15_2515 are separated by 66 nucleotidesHP15_2515 and HP15_2516 are separated by 27 nucleotidesHP15_2516 and HP15_2517 are separated by 108 nucleotides HP15_2514: HP15_2514 - lysine 2,3-aminomutase YodO family protein, at 2,653,579 to 2,654,619 _2514 HP15_2515: HP15_2515 - hypothetical protein, at 2,654,686 to 2,654,814 _2515 HP15_2516: HP15_2516 - GTPase - translation elongation factor, at 2,654,842 to 2,656,647 _2516 HP15_2517: HP15_2517 - PAS sensor diguanylate cyclase/phosphodiesterase, at 2,656,756 to 2,658,840 _2517 Position (kb) 2654 2655 2656 2657Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2654.050 kb on - strand, within HP15_2514at 2654.085 kb on - strand, within HP15_2514at 2654.349 kb on + strand, within HP15_2514at 2654.565 kb on + strandat 2654.570 kb on + strandat 2654.702 kb on - strand, within HP15_2515at 2654.809 kb on - strandat 2654.847 kb on + strandat 2654.869 kb on - strandat 2654.886 kb on - strandat 2654.934 kb on + strandat 2654.969 kb on - strandat 2654.983 kb on - strandat 2655.102 kb on - strand, within HP15_2516at 2655.170 kb on + strand, within HP15_2516at 2655.175 kb on + strand, within HP15_2516at 2655.188 kb on + strand, within HP15_2516at 2655.188 kb on + strand, within HP15_2516at 2655.188 kb on + strand, within HP15_2516at 2655.231 kb on + strand, within HP15_2516at 2655.267 kb on - strand, within HP15_2516at 2655.331 kb on + strand, within HP15_2516at 2655.365 kb on + strand, within HP15_2516at 2655.392 kb on - strand, within HP15_2516at 2655.490 kb on - strand, within HP15_2516at 2655.501 kb on + strand, within HP15_2516at 2655.518 kb on + strand, within HP15_2516at 2655.524 kb on - strand, within HP15_2516at 2655.526 kb on - strand, within HP15_2516at 2655.528 kb on + strand, within HP15_2516at 2655.596 kb on + strand, within HP15_2516at 2655.674 kb on + strand, within HP15_2516at 2655.745 kb on + strand, within HP15_2516at 2655.848 kb on + strand, within HP15_2516at 2655.848 kb on + strand, within HP15_2516at 2655.850 kb on + strand, within HP15_2516at 2655.856 kb on - strand, within HP15_2516at 2655.856 kb on - strand, within HP15_2516at 2655.858 kb on - strand, within HP15_2516at 2655.858 kb on - strand, within HP15_2516at 2656.059 kb on + strand, within HP15_2516at 2656.132 kb on - strand, within HP15_2516at 2656.222 kb on + strand, within HP15_2516at 2656.237 kb on - strand, within HP15_2516at 2656.334 kb on + strand, within HP15_2516at 2656.359 kb on + strand, within HP15_2516at 2656.364 kb on + strand, within HP15_2516at 2656.492 kb on + strandat 2656.524 kb on - strandat 2656.664 kb on + strandat 2656.664 kb on + strandat 2656.716 kb on + strandat 2656.968 kb on - strand, within HP15_2517at 2657.038 kb on - strand, within HP15_2517at 2657.052 kb on + strand, within HP15_2517at 2657.104 kb on + strand, within HP15_2517at 2657.166 kb on - strand, within HP15_2517at 2657.243 kb on - strand, within HP15_2517at 2657.261 kb on - strand, within HP15_2517at 2657.571 kb on + strand, within HP15_2517

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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2,654,050 - HP15_2514 0.45 +1.4
2,654,085 - HP15_2514 0.49 -1.4
2,654,349 + HP15_2514 0.74 -1.3
2,654,565 + -1.1
2,654,570 + -2.0
2,654,702 - HP15_2515 0.12 -0.0
2,654,809 - -0.4
2,654,847 + -1.0
2,654,869 - -0.3
2,654,886 - -0.8
2,654,934 + +0.4
2,654,969 - -0.5
2,654,983 - +0.4
2,655,102 - HP15_2516 0.14 +0.5
2,655,170 + HP15_2516 0.18 -0.6
2,655,175 + HP15_2516 0.18 +0.8
2,655,188 + HP15_2516 0.19 +0.4
2,655,188 + HP15_2516 0.19 +1.4
2,655,188 + HP15_2516 0.19 +0.2
2,655,231 + HP15_2516 0.22 -0.2
2,655,267 - HP15_2516 0.24 -0.1
2,655,331 + HP15_2516 0.27 -0.6
2,655,365 + HP15_2516 0.29 +0.7
2,655,392 - HP15_2516 0.30 +1.0
2,655,490 - HP15_2516 0.36 +0.5
2,655,501 + HP15_2516 0.36 -0.1
2,655,518 + HP15_2516 0.37 +0.5
2,655,524 - HP15_2516 0.38 -0.2
2,655,526 - HP15_2516 0.38 +0.6
2,655,528 + HP15_2516 0.38 -0.1
2,655,596 + HP15_2516 0.42 +0.5
2,655,674 + HP15_2516 0.46 +0.2
2,655,745 + HP15_2516 0.50 +0.1
2,655,848 + HP15_2516 0.56 +0.9
2,655,848 + HP15_2516 0.56 -0.0
2,655,850 + HP15_2516 0.56 +0.4
2,655,856 - HP15_2516 0.56 +0.4
2,655,856 - HP15_2516 0.56 -1.0
2,655,858 - HP15_2516 0.56 +0.3
2,655,858 - HP15_2516 0.56 +0.0
2,656,059 + HP15_2516 0.67 +0.2
2,656,132 - HP15_2516 0.71 +0.5
2,656,222 + HP15_2516 0.76 +1.2
2,656,237 - HP15_2516 0.77 -0.3
2,656,334 + HP15_2516 0.83 -0.6
2,656,359 + HP15_2516 0.84 -1.4
2,656,364 + HP15_2516 0.84 -0.0
2,656,492 + -0.0
2,656,524 - -0.4
2,656,664 + +0.4
2,656,664 + +0.2
2,656,716 + +3.2
2,656,968 - HP15_2517 0.10 +0.6
2,657,038 - HP15_2517 0.14 -0.1
2,657,052 + HP15_2517 0.14 -0.0
2,657,104 + HP15_2517 0.17 +2.7
2,657,166 - HP15_2517 0.20 -0.7
2,657,243 - HP15_2517 0.23 -0.2
2,657,261 - HP15_2517 0.24 +0.4
2,657,571 + HP15_2517 0.39 +0.8

Or see this region's nucleotide sequence