Strain Fitness in Marinobacter adhaerens HP15 around HP15_2361

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2360 and HP15_2361 are separated by 282 nucleotidesHP15_2361 and HP15_2362 are separated by 41 nucleotidesHP15_2362 and HP15_2363 overlap by 1 nucleotides HP15_2360: HP15_2360 - FxsA cytoplasmic membrane protein, at 2,486,144 to 2,486,692 _2360 HP15_2361: HP15_2361 - 3-oxoacyl-(acyl carrier protein) reductase, at 2,486,975 to 2,487,736 _2361 HP15_2362: HP15_2362 - protein containing Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding domain, at 2,487,778 to 2,488,083 _2362 HP15_2363: HP15_2363 - major facilitator superfamily MFS_1, at 2,488,083 to 2,489,420 _2363 Position (kb) 2486 2487 2488Strain fitness (log2 ratio) -2 -1 0 1 2at 2486.217 kb on - strand, within HP15_2360at 2486.330 kb on + strand, within HP15_2360at 2486.330 kb on + strand, within HP15_2360at 2486.338 kb on - strand, within HP15_2360at 2486.601 kb on + strand, within HP15_2360at 2486.705 kb on + strandat 2486.871 kb on - strandat 2486.927 kb on - strandat 2487.015 kb on + strandat 2487.046 kb on - strandat 2487.046 kb on - strandat 2487.046 kb on - strandat 2487.046 kb on - strandat 2487.052 kb on + strand, within HP15_2361at 2487.053 kb on - strand, within HP15_2361at 2487.076 kb on + strand, within HP15_2361at 2487.220 kb on + strand, within HP15_2361at 2487.273 kb on + strand, within HP15_2361at 2487.298 kb on - strand, within HP15_2361at 2487.313 kb on - strandat 2487.333 kb on + strand, within HP15_2361at 2487.341 kb on - strand, within HP15_2361at 2487.470 kb on + strand, within HP15_2361at 2487.482 kb on + strand, within HP15_2361at 2487.494 kb on + strand, within HP15_2361at 2487.507 kb on - strand, within HP15_2361at 2487.631 kb on + strand, within HP15_2361at 2487.715 kb on + strandat 2487.715 kb on + strandat 2487.723 kb on - strandat 2487.773 kb on + strandat 2487.909 kb on + strand, within HP15_2362at 2487.927 kb on - strand, within HP15_2362at 2488.013 kb on - strand, within HP15_2362at 2488.081 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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2,486,217 - HP15_2360 0.13 -1.4
2,486,330 + HP15_2360 0.34 +0.3
2,486,330 + HP15_2360 0.34 +0.6
2,486,338 - HP15_2360 0.35 +0.2
2,486,601 + HP15_2360 0.83 +0.1
2,486,705 + -0.5
2,486,871 - -0.5
2,486,927 - +0.0
2,487,015 + -0.4
2,487,046 - -1.9
2,487,046 - -0.6
2,487,046 - -0.0
2,487,046 - +0.0
2,487,052 + HP15_2361 0.10 +0.9
2,487,053 - HP15_2361 0.10 +1.1
2,487,076 + HP15_2361 0.13 +0.2
2,487,220 + HP15_2361 0.32 +0.6
2,487,273 + HP15_2361 0.39 -0.4
2,487,298 - HP15_2361 0.42 -0.1
2,487,313 - +0.4
2,487,333 + HP15_2361 0.47 +0.2
2,487,341 - HP15_2361 0.48 +0.7
2,487,470 + HP15_2361 0.65 +2.2
2,487,482 + HP15_2361 0.67 -0.3
2,487,494 + HP15_2361 0.68 +1.2
2,487,507 - HP15_2361 0.70 +0.1
2,487,631 + HP15_2361 0.86 +0.0
2,487,715 + -0.1
2,487,715 + +0.4
2,487,723 - +0.1
2,487,773 + -0.7
2,487,909 + HP15_2362 0.43 +0.1
2,487,927 - HP15_2362 0.49 +0.4
2,488,013 - HP15_2362 0.77 +0.5
2,488,081 + +0.4

Or see this region's nucleotide sequence