Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2360 and HP15_2361 are separated by 282 nucleotides HP15_2361 and HP15_2362 are separated by 41 nucleotides HP15_2362 and HP15_2363 overlap by 1 nucleotides
HP15_2360: HP15_2360 - FxsA cytoplasmic membrane protein, at 2,486,144 to 2,486,692
_2360
HP15_2361: HP15_2361 - 3-oxoacyl-(acyl carrier protein) reductase, at 2,486,975 to 2,487,736
_2361
HP15_2362: HP15_2362 - protein containing Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding domain, at 2,487,778 to 2,488,083
_2362
HP15_2363: HP15_2363 - major facilitator superfamily MFS_1, at 2,488,083 to 2,489,420
_2363
Position (kb)
2486
2487
2488 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2486.217 kb on - strand, within HP15_2360 at 2486.330 kb on + strand, within HP15_2360 at 2486.330 kb on + strand, within HP15_2360 at 2486.338 kb on - strand, within HP15_2360 at 2486.601 kb on + strand, within HP15_2360 at 2486.705 kb on + strand at 2486.871 kb on - strand at 2486.927 kb on - strand at 2487.015 kb on + strand at 2487.046 kb on - strand at 2487.046 kb on - strand at 2487.046 kb on - strand at 2487.046 kb on - strand at 2487.052 kb on + strand, within HP15_2361 at 2487.053 kb on - strand, within HP15_2361 at 2487.076 kb on + strand, within HP15_2361 at 2487.220 kb on + strand, within HP15_2361 at 2487.273 kb on + strand, within HP15_2361 at 2487.298 kb on - strand, within HP15_2361 at 2487.313 kb on - strand at 2487.333 kb on + strand, within HP15_2361 at 2487.341 kb on - strand, within HP15_2361 at 2487.470 kb on + strand, within HP15_2361 at 2487.482 kb on + strand, within HP15_2361 at 2487.494 kb on + strand, within HP15_2361 at 2487.507 kb on - strand, within HP15_2361 at 2487.631 kb on + strand, within HP15_2361 at 2487.715 kb on + strand at 2487.715 kb on + strand at 2487.723 kb on - strand at 2487.773 kb on + strand at 2487.909 kb on + strand, within HP15_2362 at 2487.927 kb on - strand, within HP15_2362 at 2488.013 kb on - strand, within HP15_2362 at 2488.081 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 2,486,217 - HP15_2360 0.13 -1.4 2,486,330 + HP15_2360 0.34 +0.3 2,486,330 + HP15_2360 0.34 +0.6 2,486,338 - HP15_2360 0.35 +0.2 2,486,601 + HP15_2360 0.83 +0.1 2,486,705 + -0.5 2,486,871 - -0.5 2,486,927 - +0.0 2,487,015 + -0.4 2,487,046 - -1.9 2,487,046 - -0.6 2,487,046 - -0.0 2,487,046 - +0.0 2,487,052 + HP15_2361 0.10 +0.9 2,487,053 - HP15_2361 0.10 +1.1 2,487,076 + HP15_2361 0.13 +0.2 2,487,220 + HP15_2361 0.32 +0.6 2,487,273 + HP15_2361 0.39 -0.4 2,487,298 - HP15_2361 0.42 -0.1 2,487,313 - +0.4 2,487,333 + HP15_2361 0.47 +0.2 2,487,341 - HP15_2361 0.48 +0.7 2,487,470 + HP15_2361 0.65 +2.2 2,487,482 + HP15_2361 0.67 -0.3 2,487,494 + HP15_2361 0.68 +1.2 2,487,507 - HP15_2361 0.70 +0.1 2,487,631 + HP15_2361 0.86 +0.0 2,487,715 + -0.1 2,487,715 + +0.4 2,487,723 - +0.1 2,487,773 + -0.7 2,487,909 + HP15_2362 0.43 +0.1 2,487,927 - HP15_2362 0.49 +0.4 2,488,013 - HP15_2362 0.77 +0.5 2,488,081 + +0.4
Or see this region's nucleotide sequence