Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02450

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02440 and PGA1_c02450 overlap by 4 nucleotidesPGA1_c02450 and PGA1_c02460 are separated by 86 nucleotides PGA1_c02440: PGA1_c02440 - putative ATP-binding/permease fusion ABC transporter, at 220,842 to 223,208 _c02440 PGA1_c02450: PGA1_c02450 - putative outer membrane efflux protein, at 223,205 to 224,524 _c02450 PGA1_c02460: PGA1_c02460 - hypothetical protein, at 224,611 to 228,288 _c02460 Position (kb) 223 224 225Strain fitness (log2 ratio) -1 0 1 2 3 4at 222.260 kb on - strand, within PGA1_c02440at 222.261 kb on + strand, within PGA1_c02440at 222.269 kb on - strand, within PGA1_c02440at 222.319 kb on + strand, within PGA1_c02440at 222.327 kb on - strand, within PGA1_c02440at 222.387 kb on + strand, within PGA1_c02440at 222.390 kb on - strand, within PGA1_c02440at 222.395 kb on - strand, within PGA1_c02440at 222.395 kb on - strand, within PGA1_c02440at 222.401 kb on - strand, within PGA1_c02440at 222.408 kb on + strand, within PGA1_c02440at 222.416 kb on + strand, within PGA1_c02440at 222.416 kb on + strand, within PGA1_c02440at 222.416 kb on - strand, within PGA1_c02440at 222.416 kb on - strand, within PGA1_c02440at 222.419 kb on + strand, within PGA1_c02440at 222.422 kb on - strand, within PGA1_c02440at 222.424 kb on - strand, within PGA1_c02440at 222.461 kb on + strand, within PGA1_c02440at 222.461 kb on + strand, within PGA1_c02440at 222.532 kb on + strand, within PGA1_c02440at 222.598 kb on - strand, within PGA1_c02440at 222.598 kb on - strand, within PGA1_c02440at 222.611 kb on + strand, within PGA1_c02440at 222.704 kb on - strand, within PGA1_c02440at 222.790 kb on - strand, within PGA1_c02440at 222.819 kb on + strand, within PGA1_c02440at 222.830 kb on + strand, within PGA1_c02440at 222.897 kb on + strand, within PGA1_c02440at 222.958 kb on + strand, within PGA1_c02440at 222.966 kb on - strand, within PGA1_c02440at 222.966 kb on - strand, within PGA1_c02440at 223.030 kb on - strandat 223.062 kb on - strandat 223.094 kb on - strandat 223.094 kb on - strandat 223.125 kb on - strandat 223.184 kb on - strandat 223.186 kb on + strandat 223.203 kb on + strandat 223.254 kb on + strandat 223.267 kb on - strandat 223.312 kb on + strandat 223.315 kb on - strandat 223.341 kb on + strand, within PGA1_c02450at 223.354 kb on - strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.356 kb on + strand, within PGA1_c02450at 223.364 kb on - strand, within PGA1_c02450at 223.364 kb on - strand, within PGA1_c02450at 223.364 kb on - strand, within PGA1_c02450at 223.364 kb on - strand, within PGA1_c02450at 223.364 kb on - strand, within PGA1_c02450at 223.364 kb on - strand, within PGA1_c02450at 223.410 kb on - strand, within PGA1_c02450at 223.410 kb on - strand, within PGA1_c02450at 223.444 kb on - strand, within PGA1_c02450at 223.499 kb on + strand, within PGA1_c02450at 223.569 kb on - strand, within PGA1_c02450at 223.579 kb on + strand, within PGA1_c02450at 223.587 kb on - strand, within PGA1_c02450at 223.605 kb on - strand, within PGA1_c02450at 223.606 kb on + strand, within PGA1_c02450at 223.634 kb on + strand, within PGA1_c02450at 223.640 kb on - strand, within PGA1_c02450at 223.670 kb on - strand, within PGA1_c02450at 223.670 kb on - strand, within PGA1_c02450at 223.672 kb on + strand, within PGA1_c02450at 223.672 kb on + strand, within PGA1_c02450at 223.680 kb on - strand, within PGA1_c02450at 223.680 kb on - strand, within PGA1_c02450at 223.680 kb on - strand, within PGA1_c02450at 223.700 kb on + strand, within PGA1_c02450at 223.742 kb on + strand, within PGA1_c02450at 223.747 kb on + strand, within PGA1_c02450at 223.843 kb on - strand, within PGA1_c02450at 223.872 kb on + strand, within PGA1_c02450at 223.873 kb on - strand, within PGA1_c02450at 223.892 kb on + strand, within PGA1_c02450at 223.900 kb on - strand, within PGA1_c02450at 223.924 kb on - strand, within PGA1_c02450at 223.962 kb on - strand, within PGA1_c02450at 223.962 kb on - strand, within PGA1_c02450at 223.962 kb on - strand, within PGA1_c02450at 224.002 kb on + strand, within PGA1_c02450at 224.002 kb on + strand, within PGA1_c02450at 224.002 kb on + strand, within PGA1_c02450at 224.002 kb on + strand, within PGA1_c02450at 224.010 kb on - strand, within PGA1_c02450at 224.010 kb on - strand, within PGA1_c02450at 224.010 kb on - strand, within PGA1_c02450at 224.010 kb on - strand, within PGA1_c02450at 224.010 kb on - strand, within PGA1_c02450at 224.010 kb on - strand, within PGA1_c02450at 224.019 kb on + strand, within PGA1_c02450at 224.027 kb on - strand, within PGA1_c02450at 224.050 kb on + strand, within PGA1_c02450at 224.227 kb on + strand, within PGA1_c02450at 224.227 kb on + strand, within PGA1_c02450at 224.235 kb on - strand, within PGA1_c02450at 224.235 kb on - strand, within PGA1_c02450at 224.235 kb on - strand, within PGA1_c02450at 224.235 kb on - strand, within PGA1_c02450at 224.245 kb on - strand, within PGA1_c02450at 224.250 kb on - strand, within PGA1_c02450at 224.438 kb on + strandat 224.439 kb on + strandat 224.468 kb on + strandat 224.476 kb on - strandat 224.532 kb on + strandat 224.532 kb on + strandat 224.532 kb on + strandat 224.532 kb on + strandat 224.535 kb on - strandat 224.540 kb on - strandat 224.586 kb on - strandat 224.668 kb on + strandat 224.676 kb on - strandat 224.703 kb on + strandat 224.728 kb on - strandat 224.730 kb on + strandat 224.730 kb on + strandat 224.730 kb on + strandat 224.738 kb on - strandat 224.811 kb on + strandat 224.819 kb on - strandat 224.898 kb on - strandat 224.928 kb on + strandat 224.936 kb on + strandat 224.946 kb on - strandat 224.965 kb on + strandat 224.970 kb on + strandat 225.009 kb on - strand, within PGA1_c02460at 225.050 kb on - strand, within PGA1_c02460at 225.057 kb on - strand, within PGA1_c02460at 225.110 kb on - strand, within PGA1_c02460at 225.190 kb on + strand, within PGA1_c02460at 225.190 kb on + strand, within PGA1_c02460at 225.192 kb on + strand, within PGA1_c02460at 225.198 kb on - strand, within PGA1_c02460at 225.198 kb on - strand, within PGA1_c02460at 225.200 kb on - strand, within PGA1_c02460at 225.200 kb on - strand, within PGA1_c02460at 225.200 kb on - strand, within PGA1_c02460at 225.231 kb on + strand, within PGA1_c02460at 225.281 kb on + strand, within PGA1_c02460at 225.346 kb on + strand, within PGA1_c02460at 225.354 kb on + strand, within PGA1_c02460at 225.362 kb on - strand, within PGA1_c02460at 225.366 kb on + strand, within PGA1_c02460

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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222,260 - PGA1_c02440 0.60 +2.6
222,261 + PGA1_c02440 0.60 +1.8
222,269 - PGA1_c02440 0.60 +2.0
222,319 + PGA1_c02440 0.62 +1.3
222,327 - PGA1_c02440 0.63 +1.9
222,387 + PGA1_c02440 0.65 -1.0
222,390 - PGA1_c02440 0.65 +3.4
222,395 - PGA1_c02440 0.66 +1.8
222,395 - PGA1_c02440 0.66 +0.8
222,401 - PGA1_c02440 0.66 -0.6
222,408 + PGA1_c02440 0.66 +4.0
222,416 + PGA1_c02440 0.66 +2.0
222,416 + PGA1_c02440 0.66 +1.6
222,416 - PGA1_c02440 0.66 +2.2
222,416 - PGA1_c02440 0.66 +1.3
222,419 + PGA1_c02440 0.67 +2.8
222,422 - PGA1_c02440 0.67 +2.2
222,424 - PGA1_c02440 0.67 +1.5
222,461 + PGA1_c02440 0.68 +2.7
222,461 + PGA1_c02440 0.68 +0.9
222,532 + PGA1_c02440 0.71 +0.9
222,598 - PGA1_c02440 0.74 +1.7
222,598 - PGA1_c02440 0.74 +2.0
222,611 + PGA1_c02440 0.75 +1.0
222,704 - PGA1_c02440 0.79 +0.1
222,790 - PGA1_c02440 0.82 +0.5
222,819 + PGA1_c02440 0.84 +1.3
222,830 + PGA1_c02440 0.84 +2.9
222,897 + PGA1_c02440 0.87 +0.8
222,958 + PGA1_c02440 0.89 +1.0
222,966 - PGA1_c02440 0.90 -0.6
222,966 - PGA1_c02440 0.90 +2.6
223,030 - +2.0
223,062 - +1.2
223,094 - +0.7
223,094 - -0.6
223,125 - +1.2
223,184 - +2.1
223,186 + +2.5
223,203 + +0.8
223,254 + +3.9
223,267 - +2.2
223,312 + +2.0
223,315 - +2.7
223,341 + PGA1_c02450 0.10 +2.0
223,354 - PGA1_c02450 0.11 +2.7
223,356 + PGA1_c02450 0.11 +2.8
223,356 + PGA1_c02450 0.11 +1.1
223,356 + PGA1_c02450 0.11 +0.6
223,356 + PGA1_c02450 0.11 +2.7
223,356 + PGA1_c02450 0.11 +0.9
223,356 + PGA1_c02450 0.11 +2.2
223,356 + PGA1_c02450 0.11 +1.4
223,356 + PGA1_c02450 0.11 +2.9
223,356 + PGA1_c02450 0.11 +2.0
223,364 - PGA1_c02450 0.12 +1.1
223,364 - PGA1_c02450 0.12 +1.8
223,364 - PGA1_c02450 0.12 +1.4
223,364 - PGA1_c02450 0.12 +2.2
223,364 - PGA1_c02450 0.12 +1.0
223,364 - PGA1_c02450 0.12 +2.2
223,410 - PGA1_c02450 0.16 +1.6
223,410 - PGA1_c02450 0.16 +1.7
223,444 - PGA1_c02450 0.18 +4.6
223,499 + PGA1_c02450 0.22 +1.2
223,569 - PGA1_c02450 0.28 +2.1
223,579 + PGA1_c02450 0.28 -0.2
223,587 - PGA1_c02450 0.29 +2.1
223,605 - PGA1_c02450 0.30 +1.9
223,606 + PGA1_c02450 0.30 -0.2
223,634 + PGA1_c02450 0.33 +0.1
223,640 - PGA1_c02450 0.33 +1.4
223,670 - PGA1_c02450 0.35 +1.8
223,670 - PGA1_c02450 0.35 +1.7
223,672 + PGA1_c02450 0.35 +1.9
223,672 + PGA1_c02450 0.35 +2.0
223,680 - PGA1_c02450 0.36 +1.1
223,680 - PGA1_c02450 0.36 +2.5
223,680 - PGA1_c02450 0.36 +2.2
223,700 + PGA1_c02450 0.38 +2.1
223,742 + PGA1_c02450 0.41 +1.2
223,747 + PGA1_c02450 0.41 +2.8
223,843 - PGA1_c02450 0.48 +1.8
223,872 + PGA1_c02450 0.51 +0.9
223,873 - PGA1_c02450 0.51 +0.6
223,892 + PGA1_c02450 0.52 +1.0
223,900 - PGA1_c02450 0.53 +1.9
223,924 - PGA1_c02450 0.54 +1.6
223,962 - PGA1_c02450 0.57 +2.7
223,962 - PGA1_c02450 0.57 +2.1
223,962 - PGA1_c02450 0.57 +1.2
224,002 + PGA1_c02450 0.60 +1.6
224,002 + PGA1_c02450 0.60 +2.0
224,002 + PGA1_c02450 0.60 +0.8
224,002 + PGA1_c02450 0.60 +0.4
224,010 - PGA1_c02450 0.61 +0.1
224,010 - PGA1_c02450 0.61 +3.6
224,010 - PGA1_c02450 0.61 +0.9
224,010 - PGA1_c02450 0.61 +2.0
224,010 - PGA1_c02450 0.61 +2.3
224,010 - PGA1_c02450 0.61 +2.7
224,019 + PGA1_c02450 0.62 +2.1
224,027 - PGA1_c02450 0.62 +1.5
224,050 + PGA1_c02450 0.64 +0.1
224,227 + PGA1_c02450 0.77 +1.2
224,227 + PGA1_c02450 0.77 +1.4
224,235 - PGA1_c02450 0.78 +2.7
224,235 - PGA1_c02450 0.78 +0.9
224,235 - PGA1_c02450 0.78 +1.9
224,235 - PGA1_c02450 0.78 +2.1
224,245 - PGA1_c02450 0.79 +2.3
224,250 - PGA1_c02450 0.79 +2.7
224,438 + +1.3
224,439 + +1.9
224,468 + -0.4
224,476 - +0.7
224,532 + +1.5
224,532 + +2.1
224,532 + +0.3
224,532 + +1.6
224,535 - -0.4
224,540 - -0.7
224,586 - +1.0
224,668 + +1.8
224,676 - +2.3
224,703 + +2.1
224,728 - +1.4
224,730 + +0.9
224,730 + +1.0
224,730 + -1.7
224,738 - +0.1
224,811 + +0.9
224,819 - +3.1
224,898 - +2.1
224,928 + +1.2
224,936 + +2.7
224,946 - +1.9
224,965 + +2.0
224,970 + +1.4
225,009 - PGA1_c02460 0.11 +2.8
225,050 - PGA1_c02460 0.12 +2.3
225,057 - PGA1_c02460 0.12 +2.3
225,110 - PGA1_c02460 0.14 +2.7
225,190 + PGA1_c02460 0.16 +1.1
225,190 + PGA1_c02460 0.16 +2.2
225,192 + PGA1_c02460 0.16 +2.3
225,198 - PGA1_c02460 0.16 +1.0
225,198 - PGA1_c02460 0.16 +1.8
225,200 - PGA1_c02460 0.16 +2.6
225,200 - PGA1_c02460 0.16 +1.7
225,200 - PGA1_c02460 0.16 +1.0
225,231 + PGA1_c02460 0.17 +1.4
225,281 + PGA1_c02460 0.18 +0.8
225,346 + PGA1_c02460 0.20 +2.3
225,354 + PGA1_c02460 0.20 +2.5
225,362 - PGA1_c02460 0.20 +2.0
225,366 + PGA1_c02460 0.21 +4.5

Or see this region's nucleotide sequence