Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02370

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02360 and PGA1_c02370 are separated by 110 nucleotidesPGA1_c02370 and PGA1_c02380 are separated by 32 nucleotides PGA1_c02360: PGA1_c02360 - pyridine nucleotide-disulphide oxidoreductase, at 212,602 to 213,930 _c02360 PGA1_c02370: PGA1_c02370 - putative ribonuclease BN, at 214,041 to 215,150 _c02370 PGA1_c02380: PGA1_c02380 - hypothetical protein, at 215,183 to 216,454 _c02380 Position (kb) 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2at 213.074 kb on + strand, within PGA1_c02360at 213.074 kb on + strand, within PGA1_c02360at 213.074 kb on + strand, within PGA1_c02360at 213.079 kb on + strand, within PGA1_c02360at 213.082 kb on - strand, within PGA1_c02360at 213.082 kb on - strand, within PGA1_c02360at 213.082 kb on - strand, within PGA1_c02360at 213.082 kb on - strand, within PGA1_c02360at 213.082 kb on - strand, within PGA1_c02360at 213.091 kb on + strand, within PGA1_c02360at 213.108 kb on - strand, within PGA1_c02360at 213.119 kb on + strand, within PGA1_c02360at 213.167 kb on + strand, within PGA1_c02360at 213.177 kb on + strand, within PGA1_c02360at 213.212 kb on - strand, within PGA1_c02360at 213.232 kb on - strand, within PGA1_c02360at 213.245 kb on + strand, within PGA1_c02360at 213.259 kb on + strand, within PGA1_c02360at 213.267 kb on - strand, within PGA1_c02360at 213.293 kb on + strand, within PGA1_c02360at 213.301 kb on - strand, within PGA1_c02360at 213.420 kb on + strand, within PGA1_c02360at 213.483 kb on - strand, within PGA1_c02360at 213.497 kb on - strand, within PGA1_c02360at 213.555 kb on - strand, within PGA1_c02360at 213.578 kb on + strand, within PGA1_c02360at 213.588 kb on + strand, within PGA1_c02360at 213.661 kb on + strand, within PGA1_c02360at 213.669 kb on - strand, within PGA1_c02360at 213.669 kb on - strand, within PGA1_c02360at 213.669 kb on - strand, within PGA1_c02360at 213.669 kb on - strand, within PGA1_c02360at 213.669 kb on - strand, within PGA1_c02360at 213.694 kb on + strand, within PGA1_c02360at 213.707 kb on - strand, within PGA1_c02360at 213.712 kb on - strand, within PGA1_c02360at 213.746 kb on - strand, within PGA1_c02360at 213.751 kb on - strand, within PGA1_c02360at 213.787 kb on + strand, within PGA1_c02360at 213.796 kb on - strand, within PGA1_c02360at 213.852 kb on - strandat 213.856 kb on + strandat 213.885 kb on + strandat 213.899 kb on - strandat 213.944 kb on - strandat 213.960 kb on - strandat 214.019 kb on - strandat 214.019 kb on - strandat 214.025 kb on + strandat 214.025 kb on + strandat 214.033 kb on - strandat 214.033 kb on - strandat 214.033 kb on - strandat 214.080 kb on - strandat 214.092 kb on + strandat 214.093 kb on + strandat 214.093 kb on + strandat 214.101 kb on - strandat 214.101 kb on - strandat 214.103 kb on - strandat 214.105 kb on - strandat 214.110 kb on - strandat 214.110 kb on - strandat 214.157 kb on - strand, within PGA1_c02370at 214.157 kb on - strand, within PGA1_c02370at 214.157 kb on - strand, within PGA1_c02370at 214.163 kb on - strand, within PGA1_c02370at 214.209 kb on + strand, within PGA1_c02370at 214.218 kb on + strand, within PGA1_c02370at 214.244 kb on + strand, within PGA1_c02370at 214.253 kb on + strand, within PGA1_c02370at 214.279 kb on - strand, within PGA1_c02370at 214.279 kb on - strand, within PGA1_c02370at 214.281 kb on + strand, within PGA1_c02370at 214.289 kb on - strand, within PGA1_c02370at 214.303 kb on - strand, within PGA1_c02370at 214.355 kb on + strand, within PGA1_c02370at 214.393 kb on - strand, within PGA1_c02370at 214.431 kb on + strand, within PGA1_c02370at 214.441 kb on + strand, within PGA1_c02370at 214.441 kb on + strand, within PGA1_c02370at 214.441 kb on + strand, within PGA1_c02370at 214.449 kb on - strand, within PGA1_c02370at 214.472 kb on - strand, within PGA1_c02370at 214.490 kb on + strand, within PGA1_c02370at 214.498 kb on - strand, within PGA1_c02370at 214.498 kb on - strand, within PGA1_c02370at 214.517 kb on + strand, within PGA1_c02370at 214.517 kb on + strand, within PGA1_c02370at 214.517 kb on + strand, within PGA1_c02370at 214.525 kb on - strand, within PGA1_c02370at 214.532 kb on + strand, within PGA1_c02370at 214.617 kb on + strand, within PGA1_c02370at 214.637 kb on + strand, within PGA1_c02370at 214.725 kb on + strand, within PGA1_c02370at 214.754 kb on + strand, within PGA1_c02370at 214.759 kb on - strand, within PGA1_c02370at 214.767 kb on - strand, within PGA1_c02370at 214.782 kb on + strand, within PGA1_c02370at 214.782 kb on + strand, within PGA1_c02370at 214.790 kb on - strand, within PGA1_c02370at 214.828 kb on - strand, within PGA1_c02370at 214.848 kb on + strand, within PGA1_c02370at 214.851 kb on - strand, within PGA1_c02370at 214.856 kb on - strand, within PGA1_c02370at 214.856 kb on - strand, within PGA1_c02370at 214.856 kb on - strand, within PGA1_c02370at 214.870 kb on + strand, within PGA1_c02370at 214.889 kb on - strand, within PGA1_c02370at 214.891 kb on - strand, within PGA1_c02370at 214.894 kb on + strand, within PGA1_c02370at 214.939 kb on + strand, within PGA1_c02370at 214.960 kb on + strand, within PGA1_c02370at 214.973 kb on + strand, within PGA1_c02370at 214.973 kb on + strand, within PGA1_c02370at 214.981 kb on - strand, within PGA1_c02370at 214.984 kb on + strand, within PGA1_c02370at 215.077 kb on - strandat 215.102 kb on + strandat 215.107 kb on + strandat 215.107 kb on + strandat 215.107 kb on + strandat 215.107 kb on + strandat 215.107 kb on + strandat 215.107 kb on + strandat 215.107 kb on + strandat 215.107 kb on + strandat 215.107 kb on + strandat 215.107 kb on + strandat 215.107 kb on + strandat 215.107 kb on + strandat 215.107 kb on + strandat 215.115 kb on - strandat 215.115 kb on - strandat 215.115 kb on - strandat 215.115 kb on - strandat 215.115 kb on - strandat 215.115 kb on - strandat 215.159 kb on + strandat 215.159 kb on + strandat 215.159 kb on + strandat 215.159 kb on + strandat 215.164 kb on + strandat 215.164 kb on + strandat 215.164 kb on + strandat 215.164 kb on + strandat 215.164 kb on + strandat 215.167 kb on - strandat 215.167 kb on - strandat 215.172 kb on - strandat 215.174 kb on + strandat 215.230 kb on - strandat 215.307 kb on - strandat 215.355 kb on + strand, within PGA1_c02380at 215.355 kb on + strand, within PGA1_c02380at 215.373 kb on - strand, within PGA1_c02380at 215.379 kb on - strand, within PGA1_c02380at 215.447 kb on + strand, within PGA1_c02380at 215.447 kb on + strand, within PGA1_c02380at 215.447 kb on + strand, within PGA1_c02380at 215.523 kb on - strand, within PGA1_c02380at 215.523 kb on - strand, within PGA1_c02380at 215.611 kb on - strand, within PGA1_c02380at 215.681 kb on - strand, within PGA1_c02380at 215.703 kb on + strand, within PGA1_c02380at 215.703 kb on + strand, within PGA1_c02380at 215.711 kb on - strand, within PGA1_c02380at 215.752 kb on - strand, within PGA1_c02380at 215.762 kb on - strand, within PGA1_c02380at 215.811 kb on + strand, within PGA1_c02380at 215.811 kb on + strand, within PGA1_c02380at 215.811 kb on + strand, within PGA1_c02380at 215.813 kb on - strand, within PGA1_c02380at 215.906 kb on - strand, within PGA1_c02380at 215.919 kb on + strand, within PGA1_c02380at 215.947 kb on + strand, within PGA1_c02380at 215.963 kb on + strand, within PGA1_c02380at 215.990 kb on + strand, within PGA1_c02380at 215.991 kb on + strand, within PGA1_c02380at 215.998 kb on - strand, within PGA1_c02380at 215.999 kb on - strand, within PGA1_c02380at 216.002 kb on + strand, within PGA1_c02380at 216.014 kb on + strand, within PGA1_c02380at 216.014 kb on + strand, within PGA1_c02380at 216.022 kb on - strand, within PGA1_c02380at 216.022 kb on - strand, within PGA1_c02380at 216.057 kb on + strand, within PGA1_c02380at 216.075 kb on - strand, within PGA1_c02380at 216.075 kb on - strand, within PGA1_c02380at 216.090 kb on - strand, within PGA1_c02380at 216.104 kb on + strand, within PGA1_c02380

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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213,074 + PGA1_c02360 0.36 -0.5
213,074 + PGA1_c02360 0.36 +1.5
213,074 + PGA1_c02360 0.36 -0.3
213,079 + PGA1_c02360 0.36 -0.6
213,082 - PGA1_c02360 0.36 -1.0
213,082 - PGA1_c02360 0.36 -0.5
213,082 - PGA1_c02360 0.36 +0.2
213,082 - PGA1_c02360 0.36 -0.5
213,082 - PGA1_c02360 0.36 -0.4
213,091 + PGA1_c02360 0.37 -1.0
213,108 - PGA1_c02360 0.38 +0.2
213,119 + PGA1_c02360 0.39 -1.0
213,167 + PGA1_c02360 0.43 -0.3
213,177 + PGA1_c02360 0.43 +0.9
213,212 - PGA1_c02360 0.46 -0.3
213,232 - PGA1_c02360 0.47 -1.8
213,245 + PGA1_c02360 0.48 +0.6
213,259 + PGA1_c02360 0.49 +0.3
213,267 - PGA1_c02360 0.50 -0.2
213,293 + PGA1_c02360 0.52 +0.3
213,301 - PGA1_c02360 0.53 +0.6
213,420 + PGA1_c02360 0.62 -0.8
213,483 - PGA1_c02360 0.66 +2.0
213,497 - PGA1_c02360 0.67 -2.0
213,555 - PGA1_c02360 0.72 -0.7
213,578 + PGA1_c02360 0.73 -0.2
213,588 + PGA1_c02360 0.74 +0.6
213,661 + PGA1_c02360 0.80 -0.4
213,669 - PGA1_c02360 0.80 +0.8
213,669 - PGA1_c02360 0.80 -0.3
213,669 - PGA1_c02360 0.80 +0.6
213,669 - PGA1_c02360 0.80 -0.3
213,669 - PGA1_c02360 0.80 +0.6
213,694 + PGA1_c02360 0.82 +0.8
213,707 - PGA1_c02360 0.83 +0.1
213,712 - PGA1_c02360 0.84 +0.8
213,746 - PGA1_c02360 0.86 +0.0
213,751 - PGA1_c02360 0.86 +0.6
213,787 + PGA1_c02360 0.89 -0.3
213,796 - PGA1_c02360 0.90 +0.5
213,852 - -0.1
213,856 + -0.8
213,885 + +1.8
213,899 - +0.4
213,944 - +0.4
213,960 - -0.0
214,019 - +0.5
214,019 - -0.8
214,025 + +2.2
214,025 + +2.2
214,033 - +0.6
214,033 - -0.8
214,033 - +0.3
214,080 - -1.6
214,092 + -1.0
214,093 + -0.4
214,093 + -0.5
214,101 - +0.5
214,101 - -0.1
214,103 - +1.4
214,105 - +1.3
214,110 - -0.1
214,110 - +1.3
214,157 - PGA1_c02370 0.10 +0.8
214,157 - PGA1_c02370 0.10 -0.5
214,157 - PGA1_c02370 0.10 +0.5
214,163 - PGA1_c02370 0.11 -0.2
214,209 + PGA1_c02370 0.15 -1.8
214,218 + PGA1_c02370 0.16 -0.4
214,244 + PGA1_c02370 0.18 +1.7
214,253 + PGA1_c02370 0.19 -0.8
214,279 - PGA1_c02370 0.21 +0.0
214,279 - PGA1_c02370 0.21 -0.1
214,281 + PGA1_c02370 0.22 -1.1
214,289 - PGA1_c02370 0.22 -0.8
214,303 - PGA1_c02370 0.24 +0.2
214,355 + PGA1_c02370 0.28 -1.0
214,393 - PGA1_c02370 0.32 +0.6
214,431 + PGA1_c02370 0.35 +0.1
214,441 + PGA1_c02370 0.36 +0.1
214,441 + PGA1_c02370 0.36 -0.6
214,441 + PGA1_c02370 0.36 -0.4
214,449 - PGA1_c02370 0.37 +0.1
214,472 - PGA1_c02370 0.39 -0.1
214,490 + PGA1_c02370 0.40 +0.0
214,498 - PGA1_c02370 0.41 +1.9
214,498 - PGA1_c02370 0.41 +0.4
214,517 + PGA1_c02370 0.43 +0.5
214,517 + PGA1_c02370 0.43 +0.9
214,517 + PGA1_c02370 0.43 -2.2
214,525 - PGA1_c02370 0.44 +0.7
214,532 + PGA1_c02370 0.44 +0.1
214,617 + PGA1_c02370 0.52 +0.5
214,637 + PGA1_c02370 0.54 -1.0
214,725 + PGA1_c02370 0.62 -0.5
214,754 + PGA1_c02370 0.64 +0.0
214,759 - PGA1_c02370 0.65 +1.4
214,767 - PGA1_c02370 0.65 -1.7
214,782 + PGA1_c02370 0.67 +0.3
214,782 + PGA1_c02370 0.67 +1.6
214,790 - PGA1_c02370 0.67 -0.5
214,828 - PGA1_c02370 0.71 -0.7
214,848 + PGA1_c02370 0.73 -0.1
214,851 - PGA1_c02370 0.73 -0.2
214,856 - PGA1_c02370 0.73 +0.9
214,856 - PGA1_c02370 0.73 +1.4
214,856 - PGA1_c02370 0.73 +0.2
214,870 + PGA1_c02370 0.75 +1.6
214,889 - PGA1_c02370 0.76 -0.5
214,891 - PGA1_c02370 0.77 -0.0
214,894 + PGA1_c02370 0.77 +2.0
214,939 + PGA1_c02370 0.81 +0.3
214,960 + PGA1_c02370 0.83 +0.3
214,973 + PGA1_c02370 0.84 +0.7
214,973 + PGA1_c02370 0.84 -1.5
214,981 - PGA1_c02370 0.85 +0.4
214,984 + PGA1_c02370 0.85 -0.5
215,077 - -0.1
215,102 + +0.5
215,107 + -0.1
215,107 + +1.2
215,107 + +0.8
215,107 + +1.4
215,107 + +0.8
215,107 + -0.4
215,107 + +0.6
215,107 + -0.2
215,107 + -0.6
215,107 + +0.8
215,107 + -0.4
215,107 + -0.6
215,107 + -2.4
215,115 - -0.0
215,115 - -2.4
215,115 - -0.1
215,115 - +1.4
215,115 - -0.4
215,115 - -0.3
215,159 + -1.2
215,159 + +0.8
215,159 + +0.1
215,159 + -0.0
215,164 + -0.0
215,164 + -0.1
215,164 + -0.0
215,164 + +2.2
215,164 + +1.0
215,167 - +0.1
215,167 - -0.4
215,172 - +1.1
215,174 + +0.0
215,230 - +1.0
215,307 - +1.2
215,355 + PGA1_c02380 0.14 -0.4
215,355 + PGA1_c02380 0.14 -1.5
215,373 - PGA1_c02380 0.15 +0.6
215,379 - PGA1_c02380 0.15 -0.1
215,447 + PGA1_c02380 0.21 -0.4
215,447 + PGA1_c02380 0.21 -0.4
215,447 + PGA1_c02380 0.21 +1.1
215,523 - PGA1_c02380 0.27 -0.8
215,523 - PGA1_c02380 0.27 -1.5
215,611 - PGA1_c02380 0.34 -0.1
215,681 - PGA1_c02380 0.39 -1.9
215,703 + PGA1_c02380 0.41 +0.4
215,703 + PGA1_c02380 0.41 +0.0
215,711 - PGA1_c02380 0.42 -0.6
215,752 - PGA1_c02380 0.45 -1.6
215,762 - PGA1_c02380 0.46 -1.0
215,811 + PGA1_c02380 0.49 +0.6
215,811 + PGA1_c02380 0.49 -1.2
215,811 + PGA1_c02380 0.49 -0.4
215,813 - PGA1_c02380 0.50 -0.4
215,906 - PGA1_c02380 0.57 -0.2
215,919 + PGA1_c02380 0.58 +0.0
215,947 + PGA1_c02380 0.60 -1.7
215,963 + PGA1_c02380 0.61 -0.4
215,990 + PGA1_c02380 0.63 +0.6
215,991 + PGA1_c02380 0.64 -0.5
215,998 - PGA1_c02380 0.64 -0.2
215,999 - PGA1_c02380 0.64 -1.7
216,002 + PGA1_c02380 0.64 -1.1
216,014 + PGA1_c02380 0.65 -0.4
216,014 + PGA1_c02380 0.65 +1.8
216,022 - PGA1_c02380 0.66 +0.7
216,022 - PGA1_c02380 0.66 -0.4
216,057 + PGA1_c02380 0.69 -1.2
216,075 - PGA1_c02380 0.70 +0.0
216,075 - PGA1_c02380 0.70 -0.7
216,090 - PGA1_c02380 0.71 -2.5
216,104 + PGA1_c02380 0.72 +0.2

Or see this region's nucleotide sequence