Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16320

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16300 and PGA1_c16310 overlap by 1 nucleotidesPGA1_c16310 and PGA1_c16320 are separated by 98 nucleotidesPGA1_c16320 and PGA1_c16330 are separated by 295 nucleotidesPGA1_c16330 and PGA1_c16340 are separated by 178 nucleotides PGA1_c16300: PGA1_c16300 - dipeptide transport ATP-binding protein DppD, at 1,692,584 to 1,693,438 _c16300 PGA1_c16310: PGA1_c16310 - oligopeptide /dipeptide transport ATP-binding protein, at 1,693,438 to 1,694,193 _c16310 PGA1_c16320: PGA1_c16320 - putative metal dependent phosphohydrolase, at 1,694,292 to 1,695,770 _c16320 PGA1_c16330: PGA1_c16330 - tRNA-Leu, at 1,696,066 to 1,696,151 _c16330 PGA1_c16340: PGA1_c16340 - Predicted membrane protein, at 1,696,330 to 1,696,908 _c16340 Position (kb) 1694 1695 1696Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1693.306 kb on + strand, within PGA1_c16300at 1693.321 kb on + strand, within PGA1_c16300at 1693.329 kb on - strand, within PGA1_c16300at 1693.329 kb on - strand, within PGA1_c16300at 1693.334 kb on - strand, within PGA1_c16300at 1693.430 kb on + strandat 1693.483 kb on - strandat 1693.544 kb on + strand, within PGA1_c16310at 1693.544 kb on + strand, within PGA1_c16310at 1693.658 kb on - strand, within PGA1_c16310at 1693.662 kb on - strand, within PGA1_c16310at 1693.677 kb on + strand, within PGA1_c16310at 1693.677 kb on + strand, within PGA1_c16310at 1693.715 kb on - strand, within PGA1_c16310at 1693.804 kb on - strand, within PGA1_c16310at 1693.827 kb on + strand, within PGA1_c16310at 1693.912 kb on + strand, within PGA1_c16310at 1694.068 kb on - strand, within PGA1_c16310at 1694.114 kb on - strand, within PGA1_c16310at 1694.130 kb on + strandat 1694.135 kb on + strandat 1694.153 kb on + strandat 1694.187 kb on + strandat 1694.195 kb on - strandat 1694.240 kb on + strandat 1694.248 kb on - strandat 1694.253 kb on + strandat 1694.376 kb on + strandat 1694.386 kb on + strandat 1694.386 kb on + strandat 1694.394 kb on - strandat 1694.394 kb on - strandat 1694.400 kb on + strandat 1694.598 kb on - strand, within PGA1_c16320at 1694.601 kb on + strand, within PGA1_c16320at 1694.606 kb on + strand, within PGA1_c16320at 1694.618 kb on + strand, within PGA1_c16320at 1694.699 kb on + strand, within PGA1_c16320at 1694.704 kb on + strand, within PGA1_c16320at 1694.707 kb on - strand, within PGA1_c16320at 1694.707 kb on - strand, within PGA1_c16320at 1694.709 kb on + strand, within PGA1_c16320at 1694.709 kb on + strand, within PGA1_c16320at 1694.709 kb on + strand, within PGA1_c16320at 1694.709 kb on + strand, within PGA1_c16320at 1694.709 kb on + strand, within PGA1_c16320at 1694.709 kb on + strand, within PGA1_c16320at 1694.709 kb on + strand, within PGA1_c16320at 1694.717 kb on - strand, within PGA1_c16320at 1694.717 kb on - strand, within PGA1_c16320at 1694.717 kb on - strand, within PGA1_c16320at 1694.717 kb on - strand, within PGA1_c16320at 1694.717 kb on - strand, within PGA1_c16320at 1694.717 kb on - strand, within PGA1_c16320at 1694.717 kb on - strand, within PGA1_c16320at 1694.717 kb on - strand, within PGA1_c16320at 1694.717 kb on - strand, within PGA1_c16320at 1694.717 kb on - strand, within PGA1_c16320at 1694.717 kb on - strand, within PGA1_c16320at 1694.717 kb on - strand, within PGA1_c16320at 1694.717 kb on - strand, within PGA1_c16320at 1694.717 kb on - strand, within PGA1_c16320at 1694.717 kb on - strand, within PGA1_c16320at 1694.732 kb on - strand, within PGA1_c16320at 1694.798 kb on - strand, within PGA1_c16320at 1694.839 kb on + strand, within PGA1_c16320at 1694.880 kb on + strand, within PGA1_c16320at 1694.960 kb on + strand, within PGA1_c16320at 1694.968 kb on - strand, within PGA1_c16320at 1694.968 kb on - strand, within PGA1_c16320at 1694.968 kb on - strand, within PGA1_c16320at 1694.977 kb on + strand, within PGA1_c16320at 1694.977 kb on + strand, within PGA1_c16320at 1695.102 kb on + strand, within PGA1_c16320at 1695.119 kb on + strand, within PGA1_c16320at 1695.152 kb on + strand, within PGA1_c16320at 1695.240 kb on - strand, within PGA1_c16320at 1695.262 kb on + strand, within PGA1_c16320at 1695.267 kb on + strand, within PGA1_c16320at 1695.275 kb on - strand, within PGA1_c16320at 1695.275 kb on - strand, within PGA1_c16320at 1695.275 kb on - strand, within PGA1_c16320at 1695.289 kb on + strand, within PGA1_c16320at 1695.289 kb on + strand, within PGA1_c16320at 1695.349 kb on + strand, within PGA1_c16320at 1695.374 kb on + strand, within PGA1_c16320at 1695.401 kb on + strand, within PGA1_c16320at 1695.413 kb on + strand, within PGA1_c16320at 1695.413 kb on + strand, within PGA1_c16320at 1695.424 kb on + strand, within PGA1_c16320at 1695.429 kb on + strand, within PGA1_c16320at 1695.429 kb on + strand, within PGA1_c16320at 1695.437 kb on - strand, within PGA1_c16320at 1695.540 kb on - strand, within PGA1_c16320at 1695.540 kb on - strand, within PGA1_c16320at 1695.540 kb on - strand, within PGA1_c16320at 1695.541 kb on - strand, within PGA1_c16320at 1695.611 kb on + strand, within PGA1_c16320at 1695.659 kb on - strandat 1695.668 kb on + strandat 1695.676 kb on - strandat 1695.676 kb on - strandat 1695.763 kb on + strandat 1695.818 kb on + strandat 1695.833 kb on + strandat 1695.833 kb on + strandat 1695.961 kb on + strandat 1696.233 kb on - strandat 1696.248 kb on - strandat 1696.311 kb on + strandat 1696.374 kb on + strandat 1696.407 kb on - strand, within PGA1_c16340at 1696.489 kb on - strand, within PGA1_c16340at 1696.520 kb on - strand, within PGA1_c16340at 1696.665 kb on - strand, within PGA1_c16340at 1696.679 kb on - strand, within PGA1_c16340at 1696.679 kb on - strand, within PGA1_c16340

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,693,306 + PGA1_c16300 0.84 -0.0
1,693,321 + PGA1_c16300 0.86 +0.9
1,693,329 - PGA1_c16300 0.87 +2.1
1,693,329 - PGA1_c16300 0.87 +0.1
1,693,334 - PGA1_c16300 0.88 +0.0
1,693,430 + -0.5
1,693,483 - -0.8
1,693,544 + PGA1_c16310 0.14 +1.3
1,693,544 + PGA1_c16310 0.14 -0.3
1,693,658 - PGA1_c16310 0.29 +0.4
1,693,662 - PGA1_c16310 0.30 +0.4
1,693,677 + PGA1_c16310 0.32 +0.1
1,693,677 + PGA1_c16310 0.32 -0.4
1,693,715 - PGA1_c16310 0.37 -1.0
1,693,804 - PGA1_c16310 0.48 -1.8
1,693,827 + PGA1_c16310 0.51 +0.6
1,693,912 + PGA1_c16310 0.63 +0.6
1,694,068 - PGA1_c16310 0.83 -0.3
1,694,114 - PGA1_c16310 0.89 +0.0
1,694,130 + +0.7
1,694,135 + -0.1
1,694,153 + +0.1
1,694,187 + +0.7
1,694,195 - -0.1
1,694,240 + +1.2
1,694,248 - -0.2
1,694,253 + -0.5
1,694,376 + +1.7
1,694,386 + +0.7
1,694,386 + -0.3
1,694,394 - +0.1
1,694,394 - +0.2
1,694,400 + +0.9
1,694,598 - PGA1_c16320 0.21 +0.0
1,694,601 + PGA1_c16320 0.21 +0.9
1,694,606 + PGA1_c16320 0.21 +0.5
1,694,618 + PGA1_c16320 0.22 -0.2
1,694,699 + PGA1_c16320 0.28 +0.7
1,694,704 + PGA1_c16320 0.28 +0.6
1,694,707 - PGA1_c16320 0.28 -0.4
1,694,707 - PGA1_c16320 0.28 +0.1
1,694,709 + PGA1_c16320 0.28 +1.3
1,694,709 + PGA1_c16320 0.28 +1.3
1,694,709 + PGA1_c16320 0.28 +0.8
1,694,709 + PGA1_c16320 0.28 +0.5
1,694,709 + PGA1_c16320 0.28 -1.0
1,694,709 + PGA1_c16320 0.28 -0.5
1,694,709 + PGA1_c16320 0.28 +0.4
1,694,717 - PGA1_c16320 0.29 -1.0
1,694,717 - PGA1_c16320 0.29 -2.2
1,694,717 - PGA1_c16320 0.29 +1.6
1,694,717 - PGA1_c16320 0.29 +0.0
1,694,717 - PGA1_c16320 0.29 -0.5
1,694,717 - PGA1_c16320 0.29 -1.7
1,694,717 - PGA1_c16320 0.29 +0.5
1,694,717 - PGA1_c16320 0.29 -0.7
1,694,717 - PGA1_c16320 0.29 +0.6
1,694,717 - PGA1_c16320 0.29 +1.8
1,694,717 - PGA1_c16320 0.29 +0.6
1,694,717 - PGA1_c16320 0.29 -1.4
1,694,717 - PGA1_c16320 0.29 +1.2
1,694,717 - PGA1_c16320 0.29 +2.4
1,694,717 - PGA1_c16320 0.29 +1.1
1,694,732 - PGA1_c16320 0.30 +0.9
1,694,798 - PGA1_c16320 0.34 +0.1
1,694,839 + PGA1_c16320 0.37 +0.4
1,694,880 + PGA1_c16320 0.40 -1.6
1,694,960 + PGA1_c16320 0.45 +1.2
1,694,968 - PGA1_c16320 0.46 +0.6
1,694,968 - PGA1_c16320 0.46 +0.6
1,694,968 - PGA1_c16320 0.46 -2.3
1,694,977 + PGA1_c16320 0.46 +0.6
1,694,977 + PGA1_c16320 0.46 -0.4
1,695,102 + PGA1_c16320 0.55 +0.0
1,695,119 + PGA1_c16320 0.56 +0.1
1,695,152 + PGA1_c16320 0.58 +0.6
1,695,240 - PGA1_c16320 0.64 -0.4
1,695,262 + PGA1_c16320 0.66 +0.4
1,695,267 + PGA1_c16320 0.66 +0.4
1,695,275 - PGA1_c16320 0.66 +0.8
1,695,275 - PGA1_c16320 0.66 -0.8
1,695,275 - PGA1_c16320 0.66 +0.4
1,695,289 + PGA1_c16320 0.67 +0.6
1,695,289 + PGA1_c16320 0.67 +1.0
1,695,349 + PGA1_c16320 0.71 -2.0
1,695,374 + PGA1_c16320 0.73 +0.0
1,695,401 + PGA1_c16320 0.75 +0.3
1,695,413 + PGA1_c16320 0.76 -1.4
1,695,413 + PGA1_c16320 0.76 -0.4
1,695,424 + PGA1_c16320 0.77 -1.0
1,695,429 + PGA1_c16320 0.77 -0.4
1,695,429 + PGA1_c16320 0.77 +0.3
1,695,437 - PGA1_c16320 0.77 -0.2
1,695,540 - PGA1_c16320 0.84 +1.7
1,695,540 - PGA1_c16320 0.84 -0.1
1,695,540 - PGA1_c16320 0.84 -0.1
1,695,541 - PGA1_c16320 0.84 +0.8
1,695,611 + PGA1_c16320 0.89 +0.1
1,695,659 - +0.6
1,695,668 + +2.9
1,695,676 - -0.2
1,695,676 - +0.6
1,695,763 + +0.9
1,695,818 + -1.4
1,695,833 + -1.0
1,695,833 + +0.9
1,695,961 + +0.6
1,696,233 - -2.6
1,696,248 - -0.3
1,696,311 + +1.1
1,696,374 + -3.3
1,696,407 - PGA1_c16340 0.13 -2.0
1,696,489 - PGA1_c16340 0.27 -2.0
1,696,520 - PGA1_c16340 0.33 +0.6
1,696,665 - PGA1_c16340 0.58 -0.4
1,696,679 - PGA1_c16340 0.60 -1.0
1,696,679 - PGA1_c16340 0.60 -1.0

Or see this region's nucleotide sequence