Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0140

Experiment: Parabanic Acid (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Parabanic Acid (N)
138,095	+		Psest_0139	0.15	-1.5
138,096	-		Psest_0139	0.15	-1.1
138,136	+		Psest_0139	0.20	-1.0
138,136	+		Psest_0139	0.20	-0.5
138,136	+		Psest_0139	0.20	+0.1
138,137	-		Psest_0139	0.21	-0.1
138,595	+		Psest_0139	0.80	-1.0
138,595	+		Psest_0139	0.80	-0.8
138,595	+		Psest_0139	0.80	-0.6
138,595	+		Psest_0139	0.80	-0.8
138,596	-		Psest_0139	0.80	-1.6
138,596	-		Psest_0139	0.80	-0.1
138,764	+				-1.0
138,764	+				+0.2
138,765	-				-2.0
138,791	+				+0.5
138,791	+				-0.2
138,791	+				-0.9
138,791	+				+1.7
138,791	+				+2.2
138,791	+				-2.4
138,791	+				-1.0
138,791	+				-1.4
138,791	+				-0.4
138,792	-				+0.1
138,792	-				+0.1
138,792	-				-0.4
138,792	-				-0.5
138,792	-				-0.6
138,792	-				-0.4
138,792	-				-1.0
138,795	+				-1.5
138,795	+				-1.5
138,795	+				-1.0
138,795	+				-0.6
138,795	+				-0.6
138,796	-				-1.0
138,796	-				-1.1
138,796	-				-0.6
138,849	+				-1.8
138,849	+				+0.2
138,850	-				+0.4
138,850	-				-1.2
138,850	-				+0.5
138,850	-				-0.3
138,850	-				-0.9
138,943	+				+0.5
138,943	+				+0.1
138,943	+				-0.5
138,943	+				-0.2
138,943	+				-0.5
138,944	-				+0.2
138,944	-				+1.3
138,944	-				-0.3
138,944	-				+0.1
138,944	-				-1.1
138,945	+				-0.6
138,945	+				-1.1
138,945	+				-0.8
138,945	+				-0.0
138,945	+				-0.8
138,945	+				-0.7
138,945	+				-0.2
138,945	+				+0.9
138,945	+				+2.5
138,945	+				-0.2
138,945	+				+1.2
138,945	+				+1.0
138,945	+				-0.4
138,946	-				-0.0
138,946	-				-2.3
138,946	-				-1.0
138,946	-				+1.2
138,946	-				+0.2
138,946	-				+3.1
138,946	-				-0.8
138,946	-				-0.4
138,946	-				-1.5
138,946	-				-0.1
138,946	-				-0.7
138,946	-				-1.3
138,946	-				-0.4
138,946	-				-1.0
138,946	-				+1.3
138,946	-				-0.6
138,946	-				-0.2
139,146	+				-2.2
139,146	+				+0.3
139,146	+				-0.8
139,146	+				+0.0
139,146	+				-1.3
139,146	+				-1.1
139,146	+				+0.4
139,147	-				-0.3
139,147	-				-0.8
139,147	-				-0.7
139,147	-				+0.0
139,147	-				-0.5
139,147	-				+1.3
139,147	-				-0.9
139,147	-				+0.3
139,166	+				+0.2
139,166	+				-0.1
139,166	+				-0.1
139,166	+				-2.5
139,166	+				+0.1
139,167	-				+1.2
139,167	-				-2.0
139,167	-				+0.6
139,167	-				-1.5
139,167	-				-1.4
139,167	-				-0.3
139,167	-				-0.4
139,167	-				-1.0
139,167	-				+0.6
139,200	+				-0.0
139,200	+				+0.7
139,201	-				+0.6
139,209	+				-0.0
139,209	+				+0.1
139,209	+				-0.5
139,249	-		Psest_0140	0.10	+0.9
139,251	+		Psest_0140	0.10	+0.4
139,251	+		Psest_0140	0.10	-1.2
139,251	+		Psest_0140	0.10	-0.3
139,251	+		Psest_0140	0.10	-1.4
139,252	-		Psest_0140	0.10	-0.8
139,252	-		Psest_0140	0.10	+0.4
139,252	-		Psest_0140	0.10	-2.8
139,252	-		Psest_0140	0.10	-0.5
139,252	-		Psest_0140	0.10	+0.0
139,252	-		Psest_0140	0.10	-0.5
139,252	-		Psest_0140	0.10	-0.4
139,323	+		Psest_0140	0.14	-0.2
139,764	-		Psest_0140	0.35	-0.2
139,954	+		Psest_0140	0.44	-0.2
139,954	+		Psest_0140	0.44	-0.3
139,954	+		Psest_0140	0.44	-0.4
139,954	+		Psest_0140	0.44	+0.2
139,954	+		Psest_0140	0.44	+1.5
139,954	+		Psest_0140	0.44	-1.6
139,955	-		Psest_0140	0.44	-1.4
139,955	-		Psest_0140	0.44	-0.1
139,955	-		Psest_0140	0.44	+0.1
139,955	-		Psest_0140	0.44	-0.1
139,955	-		Psest_0140	0.44	-0.7
139,955	-		Psest_0140	0.44	-1.1
139,956	+		Psest_0140	0.45	-0.9
139,957	-		Psest_0140	0.45	-0.9
139,957	-		Psest_0140	0.45	-0.9
140,172	+		Psest_0140	0.55	-0.1
140,172	+		Psest_0140	0.55	-0.5
140,173	-		Psest_0140	0.55	-0.5
140,173	-		Psest_0140	0.55	-0.6
140,173	-		Psest_0140	0.55	+0.8
140,173	-		Psest_0140	0.55	-0.6
140,215	-		Psest_0140	0.57	-2.8
140,433	+		Psest_0140	0.68	-0.2
140,433	+		Psest_0140	0.68	-0.1
140,433	+		Psest_0140	0.68	-1.6
140,433	+		Psest_0140	0.68	+0.0
140,433	+		Psest_0140	0.68	+0.4
140,433	+		Psest_0140	0.68	+0.2
140,433	+		Psest_0140	0.68	+0.5
140,434	-		Psest_0140	0.68	-2.0
140,434	-		Psest_0140	0.68	+0.0
140,434	-		Psest_0140	0.68	+0.1
140,434	-		Psest_0140	0.68	-0.0
140,485	+		Psest_0140	0.70	-0.2
140,545	+		Psest_0140	0.73	-0.6
140,545	+		Psest_0140	0.73	+1.2
140,546	-		Psest_0140	0.73	-0.9
140,613	+		Psest_0140	0.76	-0.8
140,613	+		Psest_0140	0.76	+0.3
140,613	+		Psest_0140	0.76	-0.8
140,613	+		Psest_0140	0.76	-1.1
140,613	+		Psest_0140	0.76	-1.0
140,614	-		Psest_0140	0.76	-0.3
140,614	-		Psest_0140	0.76	-2.0
140,614	-		Psest_0140	0.76	+0.1
140,614	-		Psest_0140	0.76	-0.4
140,640	+		Psest_0140	0.78	-0.0
140,640	+		Psest_0140	0.78	+0.0
140,640	+		Psest_0140	0.78	-2.5
140,640	+		Psest_0140	0.78	+0.4
140,640	+		Psest_0140	0.78	-0.1
140,641	-		Psest_0140	0.78	-0.1
140,641	-		Psest_0140	0.78	-0.7
140,641	-		Psest_0140	0.78	-0.2
140,641	-		Psest_0140	0.78	-0.8
140,641	-		Psest_0140	0.78	-0.4
140,641	-		Psest_0140	0.78	-0.8
140,641	-		Psest_0140	0.78	+0.3
140,653	+		Psest_0140	0.78	-0.1
140,654	-		Psest_0140	0.78	+0.5
140,654	-		Psest_0140	0.78	+0.3
140,654	-		Psest_0140	0.78	+0.2
140,829	+		Psest_0140	0.87	+0.6
140,830	-		Psest_0140	0.87	+0.1
140,830	-		Psest_0140	0.87	-1.7
140,830	-		Psest_0140	0.87	-0.5
140,928	+				-0.4
140,928	+				+2.4
140,928	+				-1.8
140,928	+				-0.2
140,928	+				-0.3
140,928	+				+0.2
140,928	+				-0.0
140,928	+				+0.1
140,928	+				-0.4
140,928	+				-0.3
140,929	-				-1.1
140,929	-				-1.9
140,929	-				-0.2
140,929	-				+0.0
140,929	-				-2.8
140,929	-				-1.7
140,929	-				-1.4
140,929	-				-0.9
140,929	-				+0.9
141,138	+				-0.4
141,138	+				+0.7
141,138	+				+0.5
141,138	+				-2.7
141,138	+				+0.3
141,139	-				-0.4
141,139	-				+0.3
141,182	-				-2.0
141,385	+		Psest_0141	0.17	-1.2
141,386	-		Psest_0141	0.17	-1.3
141,386	-		Psest_0141	0.17	-1.8
141,610	+		Psest_0141	0.47	-0.0
141,679	+		Psest_0141	0.56	+0.8
141,714	+		Psest_0141	0.60	-0.3
141,715	-		Psest_0141	0.60	+0.4
141,715	-		Psest_0141	0.60	-1.5
141,887	+		Psest_0141	0.83	+0.2
141,968	-				+1.2
142,011	+				+0.4
142,025	+				-2.2
142,026	-				+0.4
142,026	-				+0.5
142,026	-				-2.6