Strain Fitness in Dechlorosoma suillum PS around Dsui_3416

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3415 and Dsui_3416 overlap by 8 nucleotidesDsui_3416 and Dsui_3417 are separated by 56 nucleotidesDsui_3417 and Dsui_3418 overlap by 8 nucleotides Dsui_3415: Dsui_3415 - FAD/FMN-dependent dehydrogenase, at 3,667,614 to 3,669,074 _3415 Dsui_3416: Dsui_3416 - transcriptional regulator, at 3,669,067 to 3,669,876 _3416 Dsui_3417: Dsui_3417 - hypothetical protein, at 3,669,933 to 3,670,328 _3417 Dsui_3418: Dsui_3418 - putative permease, at 3,670,321 to 3,671,055 _3418 Position (kb) 3669 3670Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3668.080 kb on + strandat 3668.088 kb on - strand, within Dsui_3415at 3668.088 kb on - strand, within Dsui_3415at 3668.137 kb on + strand, within Dsui_3415at 3668.256 kb on - strand, within Dsui_3415at 3668.341 kb on - strand, within Dsui_3415at 3668.370 kb on - strand, within Dsui_3415at 3668.385 kb on - strand, within Dsui_3415at 3668.395 kb on - strand, within Dsui_3415at 3668.522 kb on + strand, within Dsui_3415at 3668.643 kb on - strand, within Dsui_3415at 3668.720 kb on - strand, within Dsui_3415at 3668.720 kb on - strand, within Dsui_3415at 3668.720 kb on - strand, within Dsui_3415at 3668.743 kb on - strand, within Dsui_3415at 3668.872 kb on - strand, within Dsui_3415at 3668.921 kb on + strand, within Dsui_3415at 3668.985 kb on - strandat 3669.073 kb on - strandat 3669.221 kb on + strand, within Dsui_3416at 3669.221 kb on + strandat 3669.431 kb on + strandat 3669.516 kb on - strand, within Dsui_3416at 3669.576 kb on + strandat 3669.673 kb on + strandat 3669.828 kb on + strandat 3669.830 kb on - strandat 3669.912 kb on - strandat 3669.960 kb on - strandat 3670.048 kb on + strandat 3670.149 kb on + strandat 3670.254 kb on + strandat 3670.272 kb on - strandat 3670.311 kb on - strandat 3670.418 kb on - strandat 3670.494 kb on + strandat 3670.685 kb on - strand, within Dsui_3418at 3670.770 kb on + strandat 3670.824 kb on + strandat 3670.845 kb on + strand, within Dsui_3418at 3670.853 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,668,080 + +1.5
3,668,088 - Dsui_3415 0.32 -0.8
3,668,088 - Dsui_3415 0.32 -0.1
3,668,137 + Dsui_3415 0.36 -0.7
3,668,256 - Dsui_3415 0.44 -0.1
3,668,341 - Dsui_3415 0.50 +0.9
3,668,370 - Dsui_3415 0.52 -3.2
3,668,385 - Dsui_3415 0.53 -1.6
3,668,395 - Dsui_3415 0.53 -1.5
3,668,522 + Dsui_3415 0.62 +0.9
3,668,643 - Dsui_3415 0.70 -0.4
3,668,720 - Dsui_3415 0.76 -0.8
3,668,720 - Dsui_3415 0.76 -0.5
3,668,720 - Dsui_3415 0.76 -0.8
3,668,743 - Dsui_3415 0.77 -1.4
3,668,872 - Dsui_3415 0.86 -0.1
3,668,921 + Dsui_3415 0.89 -1.3
3,668,985 - -0.8
3,669,073 - -1.1
3,669,221 + Dsui_3416 0.19 -1.5
3,669,221 + -0.8
3,669,431 + +1.5
3,669,516 - Dsui_3416 0.55 -0.3
3,669,576 + +1.5
3,669,673 + +1.5
3,669,828 + +0.9
3,669,830 - -0.5
3,669,912 - +2.5
3,669,960 - +0.5
3,670,048 + +0.5
3,670,149 + +1.5
3,670,254 + -0.5
3,670,272 - +1.5
3,670,311 - +1.5
3,670,418 - -0.8
3,670,494 + -0.1
3,670,685 - Dsui_3418 0.50 -0.7
3,670,770 + -0.8
3,670,824 + +1.5
3,670,845 + Dsui_3418 0.71 +0.4
3,670,853 - -0.1

Or see this region's nucleotide sequence