Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3415 and Dsui_3416 overlap by 8 nucleotides Dsui_3416 and Dsui_3417 are separated by 56 nucleotides Dsui_3417 and Dsui_3418 overlap by 8 nucleotides
Dsui_3415: Dsui_3415 - FAD/FMN-dependent dehydrogenase, at 3,667,614 to 3,669,074
_3415
Dsui_3416: Dsui_3416 - transcriptional regulator, at 3,669,067 to 3,669,876
_3416
Dsui_3417: Dsui_3417 - hypothetical protein, at 3,669,933 to 3,670,328
_3417
Dsui_3418: Dsui_3418 - putative permease, at 3,670,321 to 3,671,055
_3418
Position (kb)
3669
3670 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3668.080 kb on + strand at 3668.088 kb on - strand, within Dsui_3415 at 3668.088 kb on - strand, within Dsui_3415 at 3668.137 kb on + strand, within Dsui_3415 at 3668.256 kb on - strand, within Dsui_3415 at 3668.341 kb on - strand, within Dsui_3415 at 3668.370 kb on - strand, within Dsui_3415 at 3668.385 kb on - strand, within Dsui_3415 at 3668.395 kb on - strand, within Dsui_3415 at 3668.522 kb on + strand, within Dsui_3415 at 3668.643 kb on - strand, within Dsui_3415 at 3668.720 kb on - strand, within Dsui_3415 at 3668.720 kb on - strand, within Dsui_3415 at 3668.720 kb on - strand, within Dsui_3415 at 3668.743 kb on - strand, within Dsui_3415 at 3668.872 kb on - strand, within Dsui_3415 at 3668.921 kb on + strand, within Dsui_3415 at 3668.985 kb on - strand at 3669.073 kb on - strand at 3669.221 kb on + strand, within Dsui_3416 at 3669.221 kb on + strand at 3669.431 kb on + strand at 3669.516 kb on - strand, within Dsui_3416 at 3669.576 kb on + strand at 3669.673 kb on + strand at 3669.828 kb on + strand at 3669.830 kb on - strand at 3669.912 kb on - strand at 3669.960 kb on - strand at 3670.048 kb on + strand at 3670.149 kb on + strand at 3670.254 kb on + strand at 3670.272 kb on - strand at 3670.311 kb on - strand at 3670.418 kb on - strand at 3670.494 kb on + strand at 3670.685 kb on - strand, within Dsui_3418 at 3670.770 kb on + strand at 3670.824 kb on + strand at 3670.845 kb on + strand, within Dsui_3418 at 3670.853 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 3,668,080 + +1.5 3,668,088 - Dsui_3415 0.32 -0.8 3,668,088 - Dsui_3415 0.32 -0.1 3,668,137 + Dsui_3415 0.36 -0.7 3,668,256 - Dsui_3415 0.44 -0.1 3,668,341 - Dsui_3415 0.50 +0.9 3,668,370 - Dsui_3415 0.52 -3.2 3,668,385 - Dsui_3415 0.53 -1.6 3,668,395 - Dsui_3415 0.53 -1.5 3,668,522 + Dsui_3415 0.62 +0.9 3,668,643 - Dsui_3415 0.70 -0.4 3,668,720 - Dsui_3415 0.76 -0.8 3,668,720 - Dsui_3415 0.76 -0.5 3,668,720 - Dsui_3415 0.76 -0.8 3,668,743 - Dsui_3415 0.77 -1.4 3,668,872 - Dsui_3415 0.86 -0.1 3,668,921 + Dsui_3415 0.89 -1.3 3,668,985 - -0.8 3,669,073 - -1.1 3,669,221 + Dsui_3416 0.19 -1.5 3,669,221 + -0.8 3,669,431 + +1.5 3,669,516 - Dsui_3416 0.55 -0.3 3,669,576 + +1.5 3,669,673 + +1.5 3,669,828 + +0.9 3,669,830 - -0.5 3,669,912 - +2.5 3,669,960 - +0.5 3,670,048 + +0.5 3,670,149 + +1.5 3,670,254 + -0.5 3,670,272 - +1.5 3,670,311 - +1.5 3,670,418 - -0.8 3,670,494 + -0.1 3,670,685 - Dsui_3418 0.50 -0.7 3,670,770 + -0.8 3,670,824 + +1.5 3,670,845 + Dsui_3418 0.71 +0.4 3,670,853 - -0.1
Or see this region's nucleotide sequence