Strain Fitness in Dechlorosoma suillum PS around Dsui_3379

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3378 and Dsui_3379 are separated by 198 nucleotidesDsui_3379 and Dsui_3380 overlap by 11 nucleotidesDsui_3380 and Dsui_3381 are separated by 79 nucleotides Dsui_3378: Dsui_3378 - hypothetical protein, at 3,620,330 to 3,621,289 _3378 Dsui_3379: Dsui_3379 - S-methyl-5-thioribose-1-phosphate isomerase, at 3,621,488 to 3,622,579 _3379 Dsui_3380: Dsui_3380 - ribulose-5-phosphate 4-epimerase-like epimerase or aldolase, at 3,622,569 to 3,623,219 _3380 Dsui_3381: Dsui_3381 - hypothetical protein, at 3,623,299 to 3,623,874 _3381 Position (kb) 3621 3622 3623Strain fitness (log2 ratio) -1 0 1 2at 3620.495 kb on - strand, within Dsui_3378at 3620.539 kb on - strandat 3620.576 kb on + strandat 3620.584 kb on - strandat 3620.617 kb on - strandat 3620.643 kb on - strandat 3620.758 kb on + strandat 3620.827 kb on + strand, within Dsui_3378at 3620.849 kb on + strandat 3620.991 kb on + strandat 3620.999 kb on - strandat 3621.042 kb on - strandat 3621.155 kb on - strandat 3621.305 kb on - strandat 3621.306 kb on - strandat 3621.508 kb on - strandat 3621.566 kb on + strandat 3621.775 kb on + strand, within Dsui_3379at 3621.782 kb on + strand, within Dsui_3379at 3621.889 kb on - strandat 3621.899 kb on + strand, within Dsui_3379at 3621.899 kb on + strand, within Dsui_3379at 3621.955 kb on - strand, within Dsui_3379at 3621.975 kb on - strandat 3621.975 kb on - strandat 3622.016 kb on - strand, within Dsui_3379at 3622.018 kb on + strand, within Dsui_3379at 3622.121 kb on + strand, within Dsui_3379at 3622.126 kb on + strand, within Dsui_3379at 3622.135 kb on - strandat 3622.240 kb on + strand, within Dsui_3379at 3622.260 kb on - strand, within Dsui_3379at 3622.368 kb on - strandat 3622.559 kb on + strandat 3622.618 kb on - strandat 3622.721 kb on - strand, within Dsui_3380at 3622.781 kb on + strand, within Dsui_3380at 3622.825 kb on - strandat 3622.962 kb on - strand, within Dsui_3380at 3622.985 kb on - strand, within Dsui_3380at 3622.985 kb on - strandat 3622.986 kb on - strand, within Dsui_3380at 3623.026 kb on - strand, within Dsui_3380at 3623.027 kb on - strand, within Dsui_3380at 3623.027 kb on - strand, within Dsui_3380at 3623.039 kb on - strand, within Dsui_3380at 3623.062 kb on + strandat 3623.128 kb on - strand, within Dsui_3380at 3623.169 kb on - strandat 3623.174 kb on - strandat 3623.183 kb on - strandat 3623.184 kb on - strandat 3623.213 kb on + strandat 3623.282 kb on - strandat 3623.333 kb on - strandat 3623.371 kb on - strand, within Dsui_3381at 3623.423 kb on - strand, within Dsui_3381at 3623.460 kb on - strand, within Dsui_3381at 3623.479 kb on + strand, within Dsui_3381

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,620,495 - Dsui_3378 0.17 -0.8
3,620,539 - +0.5
3,620,576 + +2.5
3,620,584 - +1.5
3,620,617 - -0.1
3,620,643 - -0.8
3,620,758 + +1.5
3,620,827 + Dsui_3378 0.52 -0.8
3,620,849 + +1.5
3,620,991 + +0.5
3,620,999 - -0.8
3,621,042 - +0.5
3,621,155 - +0.5
3,621,305 - +0.5
3,621,306 - +1.5
3,621,508 - +1.5
3,621,566 + -0.2
3,621,775 + Dsui_3379 0.26 -0.6
3,621,782 + Dsui_3379 0.27 -0.1
3,621,889 - -0.1
3,621,899 + Dsui_3379 0.38 -0.1
3,621,899 + Dsui_3379 0.38 +1.7
3,621,955 - Dsui_3379 0.43 +0.4
3,621,975 - +1.5
3,621,975 - +0.5
3,622,016 - Dsui_3379 0.48 +0.1
3,622,018 + Dsui_3379 0.49 +0.4
3,622,121 + Dsui_3379 0.58 +0.6
3,622,126 + Dsui_3379 0.58 +0.0
3,622,135 - +0.5
3,622,240 + Dsui_3379 0.69 +0.9
3,622,260 - Dsui_3379 0.71 +0.9
3,622,368 - +0.9
3,622,559 + +0.2
3,622,618 - +0.1
3,622,721 - Dsui_3380 0.23 -0.1
3,622,781 + Dsui_3380 0.33 +0.1
3,622,825 - +0.1
3,622,962 - Dsui_3380 0.60 +0.1
3,622,985 - Dsui_3380 0.64 -0.6
3,622,985 - +0.5
3,622,986 - Dsui_3380 0.64 +0.9
3,623,026 - Dsui_3380 0.70 -0.2
3,623,027 - Dsui_3380 0.70 +0.4
3,623,027 - Dsui_3380 0.70 +0.2
3,623,039 - Dsui_3380 0.72 -0.2
3,623,062 + +0.5
3,623,128 - Dsui_3380 0.86 +0.5
3,623,169 - +1.4
3,623,174 - +0.1
3,623,183 - +0.7
3,623,184 - +2.3
3,623,213 + +0.1
3,623,282 - -0.1
3,623,333 - -0.0
3,623,371 - Dsui_3381 0.12 +2.3
3,623,423 - Dsui_3381 0.22 -0.1
3,623,460 - Dsui_3381 0.28 +0.3
3,623,479 + Dsui_3381 0.31 +0.7

Or see this region's nucleotide sequence