Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3378 and Dsui_3379 are separated by 198 nucleotides Dsui_3379 and Dsui_3380 overlap by 11 nucleotides Dsui_3380 and Dsui_3381 are separated by 79 nucleotides
Dsui_3378: Dsui_3378 - hypothetical protein, at 3,620,330 to 3,621,289
_3378
Dsui_3379: Dsui_3379 - S-methyl-5-thioribose-1-phosphate isomerase, at 3,621,488 to 3,622,579
_3379
Dsui_3380: Dsui_3380 - ribulose-5-phosphate 4-epimerase-like epimerase or aldolase, at 3,622,569 to 3,623,219
_3380
Dsui_3381: Dsui_3381 - hypothetical protein, at 3,623,299 to 3,623,874
_3381
Position (kb)
3621
3622
3623 Strain fitness (log2 ratio)
-1
0
1
2 at 3620.495 kb on - strand, within Dsui_3378 at 3620.539 kb on - strand at 3620.576 kb on + strand at 3620.584 kb on - strand at 3620.617 kb on - strand at 3620.643 kb on - strand at 3620.758 kb on + strand at 3620.827 kb on + strand, within Dsui_3378 at 3620.849 kb on + strand at 3620.991 kb on + strand at 3620.999 kb on - strand at 3621.042 kb on - strand at 3621.155 kb on - strand at 3621.305 kb on - strand at 3621.306 kb on - strand at 3621.508 kb on - strand at 3621.566 kb on + strand at 3621.775 kb on + strand, within Dsui_3379 at 3621.782 kb on + strand, within Dsui_3379 at 3621.889 kb on - strand at 3621.899 kb on + strand, within Dsui_3379 at 3621.899 kb on + strand, within Dsui_3379 at 3621.955 kb on - strand, within Dsui_3379 at 3621.975 kb on - strand at 3621.975 kb on - strand at 3622.016 kb on - strand, within Dsui_3379 at 3622.018 kb on + strand, within Dsui_3379 at 3622.121 kb on + strand, within Dsui_3379 at 3622.126 kb on + strand, within Dsui_3379 at 3622.135 kb on - strand at 3622.240 kb on + strand, within Dsui_3379 at 3622.260 kb on - strand, within Dsui_3379 at 3622.368 kb on - strand at 3622.559 kb on + strand at 3622.618 kb on - strand at 3622.721 kb on - strand, within Dsui_3380 at 3622.781 kb on + strand, within Dsui_3380 at 3622.825 kb on - strand at 3622.962 kb on - strand, within Dsui_3380 at 3622.985 kb on - strand, within Dsui_3380 at 3622.985 kb on - strand at 3622.986 kb on - strand, within Dsui_3380 at 3623.026 kb on - strand, within Dsui_3380 at 3623.027 kb on - strand, within Dsui_3380 at 3623.027 kb on - strand, within Dsui_3380 at 3623.039 kb on - strand, within Dsui_3380 at 3623.062 kb on + strand at 3623.128 kb on - strand, within Dsui_3380 at 3623.169 kb on - strand at 3623.174 kb on - strand at 3623.183 kb on - strand at 3623.184 kb on - strand at 3623.213 kb on + strand at 3623.282 kb on - strand at 3623.333 kb on - strand at 3623.371 kb on - strand, within Dsui_3381 at 3623.423 kb on - strand, within Dsui_3381 at 3623.460 kb on - strand, within Dsui_3381 at 3623.479 kb on + strand, within Dsui_3381
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 3,620,495 - Dsui_3378 0.17 -0.8 3,620,539 - +0.5 3,620,576 + +2.5 3,620,584 - +1.5 3,620,617 - -0.1 3,620,643 - -0.8 3,620,758 + +1.5 3,620,827 + Dsui_3378 0.52 -0.8 3,620,849 + +1.5 3,620,991 + +0.5 3,620,999 - -0.8 3,621,042 - +0.5 3,621,155 - +0.5 3,621,305 - +0.5 3,621,306 - +1.5 3,621,508 - +1.5 3,621,566 + -0.2 3,621,775 + Dsui_3379 0.26 -0.6 3,621,782 + Dsui_3379 0.27 -0.1 3,621,889 - -0.1 3,621,899 + Dsui_3379 0.38 -0.1 3,621,899 + Dsui_3379 0.38 +1.7 3,621,955 - Dsui_3379 0.43 +0.4 3,621,975 - +1.5 3,621,975 - +0.5 3,622,016 - Dsui_3379 0.48 +0.1 3,622,018 + Dsui_3379 0.49 +0.4 3,622,121 + Dsui_3379 0.58 +0.6 3,622,126 + Dsui_3379 0.58 +0.0 3,622,135 - +0.5 3,622,240 + Dsui_3379 0.69 +0.9 3,622,260 - Dsui_3379 0.71 +0.9 3,622,368 - +0.9 3,622,559 + +0.2 3,622,618 - +0.1 3,622,721 - Dsui_3380 0.23 -0.1 3,622,781 + Dsui_3380 0.33 +0.1 3,622,825 - +0.1 3,622,962 - Dsui_3380 0.60 +0.1 3,622,985 - Dsui_3380 0.64 -0.6 3,622,985 - +0.5 3,622,986 - Dsui_3380 0.64 +0.9 3,623,026 - Dsui_3380 0.70 -0.2 3,623,027 - Dsui_3380 0.70 +0.4 3,623,027 - Dsui_3380 0.70 +0.2 3,623,039 - Dsui_3380 0.72 -0.2 3,623,062 + +0.5 3,623,128 - Dsui_3380 0.86 +0.5 3,623,169 - +1.4 3,623,174 - +0.1 3,623,183 - +0.7 3,623,184 - +2.3 3,623,213 + +0.1 3,623,282 - -0.1 3,623,333 - -0.0 3,623,371 - Dsui_3381 0.12 +2.3 3,623,423 - Dsui_3381 0.22 -0.1 3,623,460 - Dsui_3381 0.28 +0.3 3,623,479 + Dsui_3381 0.31 +0.7
Or see this region's nucleotide sequence