Strain Fitness in Dechlorosoma suillum PS around Dsui_2620

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2617 and Dsui_2618 are separated by 18 nucleotidesDsui_2618 and Dsui_2619 are separated by 40 nucleotidesDsui_2619 and Dsui_2620 are separated by 4 nucleotidesDsui_2620 and Dsui_2621 are separated by 128 nucleotides Dsui_2617: Dsui_2617 - DNA recombination-dependent growth factor C, at 2,770,266 to 2,771,168 _2617 Dsui_2618: Dsui_2618 - putative transcriptional regulator, at 2,771,187 to 2,771,405 _2618 Dsui_2619: Dsui_2619 - hypothetical protein, at 2,771,446 to 2,771,676 _2619 Dsui_2620: Dsui_2620 - hypothetical protein, at 2,771,681 to 2,773,621 _2620 Dsui_2621: Dsui_2621 - ATPase involved in chromosome partitioning, at 2,773,750 to 2,774,658 _2621 Position (kb) 2771 2772 2773 2774Strain fitness (log2 ratio) -1 0 1 2at 2771.592 kb on + strand, within Dsui_2619at 2771.730 kb on + strandat 2771.730 kb on + strandat 2771.735 kb on + strandat 2771.790 kb on - strandat 2771.803 kb on + strandat 2771.906 kb on - strand, within Dsui_2620at 2772.105 kb on - strand, within Dsui_2620at 2772.213 kb on + strand, within Dsui_2620at 2772.251 kb on + strand, within Dsui_2620at 2772.341 kb on + strand, within Dsui_2620at 2772.450 kb on - strand, within Dsui_2620at 2772.456 kb on - strand, within Dsui_2620at 2772.467 kb on - strand, within Dsui_2620at 2772.542 kb on + strand, within Dsui_2620at 2772.610 kb on - strand, within Dsui_2620at 2772.616 kb on + strandat 2772.636 kb on + strand, within Dsui_2620at 2772.644 kb on - strand, within Dsui_2620at 2772.659 kb on + strand, within Dsui_2620at 2772.659 kb on + strand, within Dsui_2620at 2772.816 kb on + strand, within Dsui_2620at 2772.819 kb on + strand, within Dsui_2620at 2772.824 kb on - strand, within Dsui_2620at 2772.875 kb on + strand, within Dsui_2620at 2772.883 kb on - strand, within Dsui_2620at 2772.940 kb on - strand, within Dsui_2620at 2772.969 kb on - strand, within Dsui_2620at 2773.071 kb on + strand, within Dsui_2620at 2773.127 kb on + strand, within Dsui_2620at 2773.159 kb on + strand, within Dsui_2620at 2773.205 kb on - strand, within Dsui_2620at 2773.259 kb on - strand, within Dsui_2620at 2773.335 kb on + strand, within Dsui_2620at 2773.410 kb on + strand, within Dsui_2620at 2773.468 kb on + strandat 2773.499 kb on - strandat 2773.512 kb on - strandat 2773.561 kb on - strandat 2773.565 kb on - strandat 2773.565 kb on - strandat 2773.566 kb on - strandat 2773.592 kb on - strandat 2773.592 kb on - strandat 2773.619 kb on + strandat 2773.622 kb on - strandat 2773.645 kb on + strandat 2773.653 kb on - strandat 2773.694 kb on + strandat 2773.694 kb on + strandat 2773.694 kb on + strandat 2773.719 kb on - strandat 2773.763 kb on + strandat 2773.793 kb on - strandat 2773.842 kb on - strand, within Dsui_2621at 2773.854 kb on + strand, within Dsui_2621at 2773.989 kb on - strand, within Dsui_2621at 2773.991 kb on + strand, within Dsui_2621at 2774.012 kb on + strand, within Dsui_2621at 2774.056 kb on + strand, within Dsui_2621at 2774.081 kb on + strand, within Dsui_2621at 2774.088 kb on + strand, within Dsui_2621at 2774.089 kb on - strand, within Dsui_2621at 2774.140 kb on - strand, within Dsui_2621at 2774.145 kb on + strand, within Dsui_2621at 2774.261 kb on - strand, within Dsui_2621at 2774.346 kb on + strand, within Dsui_2621at 2774.364 kb on - strand, within Dsui_2621at 2774.380 kb on + strand, within Dsui_2621at 2774.423 kb on + strand, within Dsui_2621at 2774.426 kb on - strand, within Dsui_2621at 2774.445 kb on - strand, within Dsui_2621at 2774.500 kb on - strand, within Dsui_2621at 2774.523 kb on - strand, within Dsui_2621at 2774.524 kb on - strand, within Dsui_2621at 2774.545 kb on + strand, within Dsui_2621at 2774.545 kb on + strand, within Dsui_2621at 2774.555 kb on - strand, within Dsui_2621at 2774.555 kb on - strand, within Dsui_2621at 2774.558 kb on - strand, within Dsui_2621at 2774.561 kb on - strand, within Dsui_2621at 2774.618 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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2,771,592 + Dsui_2619 0.63 -1.4
2,771,730 + -0.2
2,771,730 + +0.6
2,771,735 + -1.0
2,771,790 - -0.1
2,771,803 + -0.2
2,771,906 - Dsui_2620 0.12 +2.0
2,772,105 - Dsui_2620 0.22 +0.9
2,772,213 + Dsui_2620 0.27 -0.3
2,772,251 + Dsui_2620 0.29 -0.7
2,772,341 + Dsui_2620 0.34 -0.5
2,772,450 - Dsui_2620 0.40 +0.2
2,772,456 - Dsui_2620 0.40 +0.1
2,772,467 - Dsui_2620 0.40 +0.4
2,772,542 + Dsui_2620 0.44 -0.5
2,772,610 - Dsui_2620 0.48 -0.3
2,772,616 + +0.6
2,772,636 + Dsui_2620 0.49 +0.4
2,772,644 - Dsui_2620 0.50 -0.1
2,772,659 + Dsui_2620 0.50 -0.6
2,772,659 + Dsui_2620 0.50 +1.0
2,772,816 + Dsui_2620 0.58 -0.8
2,772,819 + Dsui_2620 0.59 -0.1
2,772,824 - Dsui_2620 0.59 -0.5
2,772,875 + Dsui_2620 0.62 +0.3
2,772,883 - Dsui_2620 0.62 -1.7
2,772,940 - Dsui_2620 0.65 +0.3
2,772,969 - Dsui_2620 0.66 -1.6
2,773,071 + Dsui_2620 0.72 -0.2
2,773,127 + Dsui_2620 0.74 -0.6
2,773,159 + Dsui_2620 0.76 -0.3
2,773,205 - Dsui_2620 0.79 +0.6
2,773,259 - Dsui_2620 0.81 -0.4
2,773,335 + Dsui_2620 0.85 -1.0
2,773,410 + Dsui_2620 0.89 -0.3
2,773,468 + +1.0
2,773,499 - +0.3
2,773,512 - +0.2
2,773,561 - -0.7
2,773,565 - +1.0
2,773,565 - -0.2
2,773,566 - -1.6
2,773,592 - -1.2
2,773,592 - +0.1
2,773,619 + -0.2
2,773,622 - -1.1
2,773,645 + -0.6
2,773,653 - +1.6
2,773,694 + -0.7
2,773,694 + -0.1
2,773,694 + +0.1
2,773,719 - +0.3
2,773,763 + +0.3
2,773,793 - -0.1
2,773,842 - Dsui_2621 0.10 +0.2
2,773,854 + Dsui_2621 0.11 -1.2
2,773,989 - Dsui_2621 0.26 -1.3
2,773,991 + Dsui_2621 0.27 +0.2
2,774,012 + Dsui_2621 0.29 +0.5
2,774,056 + Dsui_2621 0.34 +0.5
2,774,081 + Dsui_2621 0.36 -0.0
2,774,088 + Dsui_2621 0.37 +0.9
2,774,089 - Dsui_2621 0.37 -0.4
2,774,140 - Dsui_2621 0.43 -1.2
2,774,145 + Dsui_2621 0.43 +0.2
2,774,261 - Dsui_2621 0.56 -0.7
2,774,346 + Dsui_2621 0.66 -0.7
2,774,364 - Dsui_2621 0.68 -0.0
2,774,380 + Dsui_2621 0.69 -0.1
2,774,423 + Dsui_2621 0.74 +0.8
2,774,426 - Dsui_2621 0.74 -0.5
2,774,445 - Dsui_2621 0.76 -0.1
2,774,500 - Dsui_2621 0.83 +0.4
2,774,523 - Dsui_2621 0.85 +0.2
2,774,524 - Dsui_2621 0.85 +0.7
2,774,545 + Dsui_2621 0.87 -0.5
2,774,545 + Dsui_2621 0.87 +0.2
2,774,555 - Dsui_2621 0.89 +0.3
2,774,555 - Dsui_2621 0.89 +0.3
2,774,558 - Dsui_2621 0.89 -0.9
2,774,561 - Dsui_2621 0.89 +0.3
2,774,618 + +0.6

Or see this region's nucleotide sequence