Strain Fitness in Dechlorosoma suillum PS around Dsui_1929

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1927 and Dsui_1928 are separated by 238 nucleotidesDsui_1928 and Dsui_1929 are separated by 25 nucleotidesDsui_1929 and Dsui_1930 are separated by 14 nucleotides Dsui_1927: Dsui_1927 - hypothetical protein, at 2,037,809 to 2,038,468 _1927 Dsui_1928: Dsui_1928 - cytochrome c, mono- and diheme variants family, at 2,038,707 to 2,039,060 _1928 Dsui_1929: Dsui_1929 - Prokaryotic membrane lipoprotein lipid attachment site/Cytochrome D1 heme domain protein, at 2,039,086 to 2,040,279 _1929 Dsui_1930: Dsui_1930 - transcriptional regulator, at 2,040,294 to 2,041,322 _1930 Position (kb) 2039 2040 2041Strain fitness (log2 ratio) -2 -1 0 1at 2038.094 kb on - strand, within Dsui_1927at 2038.138 kb on - strand, within Dsui_1927at 2038.143 kb on - strand, within Dsui_1927at 2038.160 kb on - strand, within Dsui_1927at 2038.191 kb on + strand, within Dsui_1927at 2038.241 kb on - strand, within Dsui_1927at 2038.329 kb on - strand, within Dsui_1927at 2038.367 kb on - strandat 2038.408 kb on - strandat 2038.434 kb on - strandat 2038.438 kb on + strandat 2038.458 kb on - strandat 2038.485 kb on - strandat 2038.532 kb on + strandat 2038.545 kb on + strandat 2038.545 kb on + strandat 2038.548 kb on - strandat 2038.550 kb on + strandat 2038.553 kb on - strandat 2038.555 kb on + strandat 2038.558 kb on - strandat 2038.561 kb on + strandat 2038.563 kb on - strandat 2038.566 kb on + strandat 2038.568 kb on - strandat 2038.569 kb on - strandat 2038.574 kb on - strandat 2038.577 kb on + strandat 2038.755 kb on - strandat 2038.755 kb on - strand, within Dsui_1928at 2038.812 kb on + strand, within Dsui_1928at 2038.874 kb on - strand, within Dsui_1928at 2038.874 kb on - strand, within Dsui_1928at 2038.885 kb on + strand, within Dsui_1928at 2038.891 kb on + strand, within Dsui_1928at 2038.905 kb on + strand, within Dsui_1928at 2038.913 kb on - strandat 2038.920 kb on - strand, within Dsui_1928at 2038.945 kb on + strand, within Dsui_1928at 2038.980 kb on - strandat 2039.033 kb on + strandat 2039.142 kb on - strandat 2039.234 kb on - strand, within Dsui_1929at 2039.312 kb on + strand, within Dsui_1929at 2039.322 kb on + strand, within Dsui_1929at 2039.353 kb on + strand, within Dsui_1929at 2039.451 kb on + strand, within Dsui_1929at 2039.480 kb on + strand, within Dsui_1929at 2039.504 kb on + strand, within Dsui_1929at 2039.837 kb on - strand, within Dsui_1929at 2039.839 kb on + strand, within Dsui_1929at 2039.862 kb on + strand, within Dsui_1929at 2039.962 kb on + strand, within Dsui_1929at 2040.073 kb on - strand, within Dsui_1929at 2040.143 kb on - strand, within Dsui_1929at 2040.202 kb on + strandat 2040.209 kb on - strandat 2040.236 kb on - strandat 2040.323 kb on + strandat 2040.348 kb on + strandat 2040.438 kb on - strand, within Dsui_1930at 2040.527 kb on + strand, within Dsui_1930at 2040.565 kb on + strand, within Dsui_1930at 2040.570 kb on + strand, within Dsui_1930at 2040.595 kb on + strand, within Dsui_1930at 2040.601 kb on - strand, within Dsui_1930at 2040.793 kb on + strand, within Dsui_1930at 2040.803 kb on + strand, within Dsui_1930at 2040.816 kb on - strandat 2040.905 kb on - strandat 2040.905 kb on - strandat 2040.936 kb on + strand, within Dsui_1930at 2040.986 kb on + strand, within Dsui_1930at 2040.994 kb on - strand, within Dsui_1930at 2041.018 kb on - strand, within Dsui_1930at 2041.042 kb on - strand, within Dsui_1930at 2041.253 kb on - strandat 2041.278 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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2,038,094 - Dsui_1927 0.43 -0.0
2,038,138 - Dsui_1927 0.50 -0.3
2,038,143 - Dsui_1927 0.51 -1.1
2,038,160 - Dsui_1927 0.53 -0.3
2,038,191 + Dsui_1927 0.58 -1.5
2,038,241 - Dsui_1927 0.65 -0.3
2,038,329 - Dsui_1927 0.79 -0.3
2,038,367 - +1.1
2,038,408 - -0.6
2,038,434 - +0.6
2,038,438 + -1.6
2,038,458 - +0.1
2,038,485 - -0.1
2,038,532 + +0.6
2,038,545 + +0.9
2,038,545 + -0.7
2,038,548 - +0.2
2,038,550 + -0.3
2,038,553 - +0.4
2,038,555 + -0.7
2,038,558 - +0.5
2,038,561 + +0.0
2,038,563 - +0.6
2,038,566 + +0.9
2,038,568 - -0.3
2,038,569 - +1.0
2,038,574 - -1.2
2,038,577 + +0.8
2,038,755 - +0.6
2,038,755 - Dsui_1928 0.14 -1.8
2,038,812 + Dsui_1928 0.30 +0.0
2,038,874 - Dsui_1928 0.47 -1.4
2,038,874 - Dsui_1928 0.47 -1.2
2,038,885 + Dsui_1928 0.50 -0.8
2,038,891 + Dsui_1928 0.52 -1.4
2,038,905 + Dsui_1928 0.56 +0.0
2,038,913 - +1.6
2,038,920 - Dsui_1928 0.60 -0.9
2,038,945 + Dsui_1928 0.67 -0.5
2,038,980 - +1.3
2,039,033 + -0.1
2,039,142 - -1.2
2,039,234 - Dsui_1929 0.12 -2.1
2,039,312 + Dsui_1929 0.19 -1.7
2,039,322 + Dsui_1929 0.20 -0.9
2,039,353 + Dsui_1929 0.22 -1.3
2,039,451 + Dsui_1929 0.31 -1.3
2,039,480 + Dsui_1929 0.33 -2.3
2,039,504 + Dsui_1929 0.35 -0.4
2,039,837 - Dsui_1929 0.63 -1.7
2,039,839 + Dsui_1929 0.63 +0.6
2,039,862 + Dsui_1929 0.65 -0.8
2,039,962 + Dsui_1929 0.73 -0.6
2,040,073 - Dsui_1929 0.83 -1.1
2,040,143 - Dsui_1929 0.89 +0.0
2,040,202 + -2.3
2,040,209 - -0.7
2,040,236 - -1.2
2,040,323 + -1.5
2,040,348 + -0.3
2,040,438 - Dsui_1930 0.14 -1.5
2,040,527 + Dsui_1930 0.23 -1.0
2,040,565 + Dsui_1930 0.26 -0.1
2,040,570 + Dsui_1930 0.27 -1.6
2,040,595 + Dsui_1930 0.29 -0.9
2,040,601 - Dsui_1930 0.30 -1.6
2,040,793 + Dsui_1930 0.48 -0.9
2,040,803 + Dsui_1930 0.49 -0.9
2,040,816 - +0.6
2,040,905 - +1.6
2,040,905 - +1.6
2,040,936 + Dsui_1930 0.62 -0.7
2,040,986 + Dsui_1930 0.67 +0.3
2,040,994 - Dsui_1930 0.68 -0.4
2,041,018 - Dsui_1930 0.70 -1.7
2,041,042 - Dsui_1930 0.73 +0.0
2,041,253 - +0.0
2,041,278 + -1.6

Or see this region's nucleotide sequence