Strain Fitness in Dechlorosoma suillum PS around Dsui_1613

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1612 and Dsui_1613 are separated by 420 nucleotidesDsui_1613 and Dsui_1614 are separated by 112 nucleotidesDsui_1614 and Dsui_1615 are separated by 41 nucleotidesDsui_1615 and Dsui_1616 are separated by 58 nucleotides Dsui_1612: Dsui_1612 - hypothetical protein, at 1,695,969 to 1,696,277 _1612 Dsui_1613: Dsui_1613 - cytochrome c553, at 1,696,698 to 1,697,384 _1613 Dsui_1614: Dsui_1614 - hypothetical protein, at 1,697,497 to 1,697,661 _1614 Dsui_1615: Dsui_1615 - hypothetical protein, at 1,697,703 to 1,697,885 _1615 Dsui_1616: Dsui_1616 - nitroreductase, at 1,697,944 to 1,698,534 _1616 Position (kb) 1696 1697 1698Strain fitness (log2 ratio) -1 0 1 2at 1695.754 kb on + strandat 1695.772 kb on + strandat 1695.785 kb on - strandat 1695.819 kb on + strandat 1695.827 kb on - strandat 1695.829 kb on - strandat 1695.865 kb on + strandat 1695.879 kb on - strandat 1696.000 kb on + strand, within Dsui_1612at 1696.005 kb on + strand, within Dsui_1612at 1696.008 kb on + strand, within Dsui_1612at 1696.008 kb on + strand, within Dsui_1612at 1696.016 kb on - strand, within Dsui_1612at 1696.058 kb on + strand, within Dsui_1612at 1696.161 kb on + strand, within Dsui_1612at 1696.164 kb on - strandat 1696.194 kb on + strand, within Dsui_1612at 1696.202 kb on - strand, within Dsui_1612at 1696.271 kb on + strandat 1696.271 kb on + strandat 1696.279 kb on - strandat 1696.289 kb on + strandat 1696.307 kb on + strandat 1696.310 kb on - strandat 1696.336 kb on + strandat 1696.386 kb on - strandat 1696.447 kb on + strandat 1696.691 kb on - strandat 1696.746 kb on + strandat 1696.771 kb on + strand, within Dsui_1613at 1696.908 kb on - strand, within Dsui_1613at 1696.949 kb on + strand, within Dsui_1613at 1696.949 kb on + strandat 1697.044 kb on + strandat 1697.044 kb on + strand, within Dsui_1613at 1697.052 kb on - strand, within Dsui_1613at 1697.113 kb on - strand, within Dsui_1613at 1697.122 kb on - strand, within Dsui_1613at 1697.172 kb on - strand, within Dsui_1613at 1697.373 kb on - strandat 1697.489 kb on + strandat 1697.609 kb on + strand, within Dsui_1614at 1697.622 kb on - strand, within Dsui_1614at 1697.648 kb on + strandat 1697.814 kb on - strand, within Dsui_1615at 1697.821 kb on - strand, within Dsui_1615at 1697.834 kb on - strand, within Dsui_1615at 1697.984 kb on + strandat 1698.260 kb on + strandat 1698.383 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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1,695,754 + -0.1
1,695,772 + +0.6
1,695,785 - -0.9
1,695,819 + +0.2
1,695,827 - +0.5
1,695,829 - +2.5
1,695,865 + -1.0
1,695,879 - +0.8
1,696,000 + Dsui_1612 0.10 +0.9
1,696,005 + Dsui_1612 0.12 -0.8
1,696,008 + Dsui_1612 0.13 -0.6
1,696,008 + Dsui_1612 0.13 +0.8
1,696,016 - Dsui_1612 0.15 +0.3
1,696,058 + Dsui_1612 0.29 +0.3
1,696,161 + Dsui_1612 0.62 +0.8
1,696,164 - -1.1
1,696,194 + Dsui_1612 0.73 +0.1
1,696,202 - Dsui_1612 0.75 -0.4
1,696,271 + -0.5
1,696,271 + -1.2
1,696,279 - +0.0
1,696,289 + +0.0
1,696,307 + +1.1
1,696,310 - -1.4
1,696,336 + +0.2
1,696,386 - -1.1
1,696,447 + +1.9
1,696,691 - +0.1
1,696,746 + +0.1
1,696,771 + Dsui_1613 0.11 -0.0
1,696,908 - Dsui_1613 0.31 +0.5
1,696,949 + Dsui_1613 0.37 +0.4
1,696,949 + +0.8
1,697,044 + +1.5
1,697,044 + Dsui_1613 0.50 +0.5
1,697,052 - Dsui_1613 0.52 +0.3
1,697,113 - Dsui_1613 0.60 -0.1
1,697,122 - Dsui_1613 0.62 +0.0
1,697,172 - Dsui_1613 0.69 +0.5
1,697,373 - +0.3
1,697,489 + +0.7
1,697,609 + Dsui_1614 0.68 -1.1
1,697,622 - Dsui_1614 0.76 +0.2
1,697,648 + -0.2
1,697,814 - Dsui_1615 0.61 -0.3
1,697,821 - Dsui_1615 0.64 -0.2
1,697,834 - Dsui_1615 0.72 +0.0
1,697,984 + -0.1
1,698,260 + +0.5
1,698,383 + +2.5

Or see this region's nucleotide sequence