Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1612 and Dsui_1613 are separated by 420 nucleotides Dsui_1613 and Dsui_1614 are separated by 112 nucleotides Dsui_1614 and Dsui_1615 are separated by 41 nucleotides Dsui_1615 and Dsui_1616 are separated by 58 nucleotides
Dsui_1612: Dsui_1612 - hypothetical protein, at 1,695,969 to 1,696,277
_1612
Dsui_1613: Dsui_1613 - cytochrome c553, at 1,696,698 to 1,697,384
_1613
Dsui_1614: Dsui_1614 - hypothetical protein, at 1,697,497 to 1,697,661
_1614
Dsui_1615: Dsui_1615 - hypothetical protein, at 1,697,703 to 1,697,885
_1615
Dsui_1616: Dsui_1616 - nitroreductase, at 1,697,944 to 1,698,534
_1616
Position (kb)
1696
1697
1698 Strain fitness (log2 ratio)
-1
0
1
2 at 1695.754 kb on + strand at 1695.772 kb on + strand at 1695.785 kb on - strand at 1695.819 kb on + strand at 1695.827 kb on - strand at 1695.829 kb on - strand at 1695.865 kb on + strand at 1695.879 kb on - strand at 1696.000 kb on + strand, within Dsui_1612 at 1696.005 kb on + strand, within Dsui_1612 at 1696.008 kb on + strand, within Dsui_1612 at 1696.008 kb on + strand, within Dsui_1612 at 1696.016 kb on - strand, within Dsui_1612 at 1696.058 kb on + strand, within Dsui_1612 at 1696.161 kb on + strand, within Dsui_1612 at 1696.164 kb on - strand at 1696.194 kb on + strand, within Dsui_1612 at 1696.202 kb on - strand, within Dsui_1612 at 1696.271 kb on + strand at 1696.271 kb on + strand at 1696.279 kb on - strand at 1696.289 kb on + strand at 1696.307 kb on + strand at 1696.310 kb on - strand at 1696.336 kb on + strand at 1696.386 kb on - strand at 1696.447 kb on + strand at 1696.691 kb on - strand at 1696.746 kb on + strand at 1696.771 kb on + strand, within Dsui_1613 at 1696.908 kb on - strand, within Dsui_1613 at 1696.949 kb on + strand, within Dsui_1613 at 1696.949 kb on + strand at 1697.044 kb on + strand at 1697.044 kb on + strand, within Dsui_1613 at 1697.052 kb on - strand, within Dsui_1613 at 1697.113 kb on - strand, within Dsui_1613 at 1697.122 kb on - strand, within Dsui_1613 at 1697.172 kb on - strand, within Dsui_1613 at 1697.373 kb on - strand at 1697.489 kb on + strand at 1697.609 kb on + strand, within Dsui_1614 at 1697.622 kb on - strand, within Dsui_1614 at 1697.648 kb on + strand at 1697.814 kb on - strand, within Dsui_1615 at 1697.821 kb on - strand, within Dsui_1615 at 1697.834 kb on - strand, within Dsui_1615 at 1697.984 kb on + strand at 1698.260 kb on + strand at 1698.383 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 1,695,754 + -0.1 1,695,772 + +0.6 1,695,785 - -0.9 1,695,819 + +0.2 1,695,827 - +0.5 1,695,829 - +2.5 1,695,865 + -1.0 1,695,879 - +0.8 1,696,000 + Dsui_1612 0.10 +0.9 1,696,005 + Dsui_1612 0.12 -0.8 1,696,008 + Dsui_1612 0.13 -0.6 1,696,008 + Dsui_1612 0.13 +0.8 1,696,016 - Dsui_1612 0.15 +0.3 1,696,058 + Dsui_1612 0.29 +0.3 1,696,161 + Dsui_1612 0.62 +0.8 1,696,164 - -1.1 1,696,194 + Dsui_1612 0.73 +0.1 1,696,202 - Dsui_1612 0.75 -0.4 1,696,271 + -0.5 1,696,271 + -1.2 1,696,279 - +0.0 1,696,289 + +0.0 1,696,307 + +1.1 1,696,310 - -1.4 1,696,336 + +0.2 1,696,386 - -1.1 1,696,447 + +1.9 1,696,691 - +0.1 1,696,746 + +0.1 1,696,771 + Dsui_1613 0.11 -0.0 1,696,908 - Dsui_1613 0.31 +0.5 1,696,949 + Dsui_1613 0.37 +0.4 1,696,949 + +0.8 1,697,044 + +1.5 1,697,044 + Dsui_1613 0.50 +0.5 1,697,052 - Dsui_1613 0.52 +0.3 1,697,113 - Dsui_1613 0.60 -0.1 1,697,122 - Dsui_1613 0.62 +0.0 1,697,172 - Dsui_1613 0.69 +0.5 1,697,373 - +0.3 1,697,489 + +0.7 1,697,609 + Dsui_1614 0.68 -1.1 1,697,622 - Dsui_1614 0.76 +0.2 1,697,648 + -0.2 1,697,814 - Dsui_1615 0.61 -0.3 1,697,821 - Dsui_1615 0.64 -0.2 1,697,834 - Dsui_1615 0.72 +0.0 1,697,984 + -0.1 1,698,260 + +0.5 1,698,383 + +2.5
Or see this region's nucleotide sequence