Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1550 and Dsui_1551 are separated by 156 nucleotides Dsui_1551 and Dsui_1552 are separated by 67 nucleotides
Dsui_1550: Dsui_1550 - diguanylate cyclase (GGDEF) domain-containing protein, at 1,611,513 to 1,613,231
_1550
Dsui_1551: Dsui_1551 - DNA mismatch repair protein MutL, at 1,613,388 to 1,615,244
_1551
Dsui_1552: Dsui_1552 - tRNA isopentenyltransferase MiaA, at 1,615,312 to 1,616,259
_1552
Position (kb)
1613
1614
1615
1616 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1612.456 kb on - strand, within Dsui_1550 at 1612.457 kb on - strand, within Dsui_1550 at 1612.550 kb on - strand, within Dsui_1550 at 1612.569 kb on - strand, within Dsui_1550 at 1612.574 kb on - strand, within Dsui_1550 at 1612.817 kb on - strand, within Dsui_1550 at 1613.057 kb on + strand at 1613.197 kb on + strand at 1613.210 kb on - strand at 1613.235 kb on - strand at 1613.293 kb on - strand at 1613.465 kb on + strand at 1613.632 kb on + strand, within Dsui_1551 at 1613.972 kb on - strand at 1614.004 kb on + strand, within Dsui_1551 at 1614.101 kb on + strand, within Dsui_1551 at 1614.341 kb on + strand, within Dsui_1551 at 1614.353 kb on + strand, within Dsui_1551 at 1614.361 kb on - strand, within Dsui_1551 at 1614.405 kb on - strand at 1614.517 kb on + strand, within Dsui_1551 at 1614.743 kb on + strand, within Dsui_1551 at 1614.797 kb on - strand, within Dsui_1551 at 1614.968 kb on - strand, within Dsui_1551 at 1614.978 kb on + strand, within Dsui_1551 at 1614.987 kb on - strand, within Dsui_1551 at 1615.019 kb on + strand, within Dsui_1551 at 1615.059 kb on + strand at 1615.202 kb on + strand at 1615.262 kb on + strand at 1615.601 kb on + strand, within Dsui_1552
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 1,612,456 - Dsui_1550 0.55 -0.6 1,612,457 - Dsui_1550 0.55 +0.2 1,612,550 - Dsui_1550 0.60 +1.2 1,612,569 - Dsui_1550 0.61 +1.1 1,612,574 - Dsui_1550 0.62 +0.4 1,612,817 - Dsui_1550 0.76 +0.1 1,613,057 + +1.5 1,613,197 + -2.1 1,613,210 - +0.0 1,613,235 - +0.9 1,613,293 - -0.1 1,613,465 + +0.5 1,613,632 + Dsui_1551 0.13 +2.2 1,613,972 - +1.5 1,614,004 + Dsui_1551 0.33 +0.2 1,614,101 + Dsui_1551 0.38 -0.1 1,614,341 + Dsui_1551 0.51 +0.5 1,614,353 + Dsui_1551 0.52 +2.5 1,614,361 - Dsui_1551 0.52 +1.0 1,614,405 - -0.5 1,614,517 + Dsui_1551 0.61 -0.2 1,614,743 + Dsui_1551 0.73 +0.3 1,614,797 - Dsui_1551 0.76 +0.6 1,614,968 - Dsui_1551 0.85 -0.5 1,614,978 + Dsui_1551 0.86 +0.5 1,614,987 - Dsui_1551 0.86 +1.2 1,615,019 + Dsui_1551 0.88 -0.9 1,615,059 + -1.3 1,615,202 + -0.8 1,615,262 + -0.1 1,615,601 + Dsui_1552 0.30 +1.5
Or see this region's nucleotide sequence