Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1461 and Dsui_1462 overlap by 4 nucleotides Dsui_1462 and Dsui_1463 are separated by 107 nucleotides Dsui_1463 and Dsui_1464 are separated by 300 nucleotides
Dsui_1461: Dsui_1461 - RND family efflux transporter, MFP subunit, at 1,520,429 to 1,521,598
_1461
Dsui_1462: Dsui_1462 - ABC-type antimicrobial peptide transport system, ATPase component, at 1,521,595 to 1,522,398
_1462
Dsui_1463: Dsui_1463 - transcriptional activator of acetoin/glycerol metabolism, at 1,522,506 to 1,524,446
_1463
Dsui_1464: Dsui_1464 - NAD-dependent aldehyde dehydrogenase, at 1,524,747 to 1,526,267
_1464
Position (kb)
1522
1523
1524
1525 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1521.577 kb on + strand at 1521.869 kb on + strand, within Dsui_1462 at 1522.292 kb on - strand, within Dsui_1462 at 1522.530 kb on + strand at 1522.558 kb on - strand at 1522.671 kb on - strand at 1522.845 kb on - strand at 1522.871 kb on + strand, within Dsui_1463 at 1522.880 kb on - strand, within Dsui_1463 at 1522.995 kb on - strand, within Dsui_1463 at 1523.035 kb on + strand, within Dsui_1463 at 1523.241 kb on + strand at 1523.348 kb on - strand, within Dsui_1463 at 1523.360 kb on + strand, within Dsui_1463 at 1523.379 kb on - strand, within Dsui_1463 at 1523.602 kb on - strand at 1523.677 kb on + strand, within Dsui_1463 at 1523.832 kb on + strand at 1523.863 kb on - strand at 1523.863 kb on - strand at 1523.939 kb on + strand, within Dsui_1463 at 1524.023 kb on - strand, within Dsui_1463 at 1524.025 kb on + strand, within Dsui_1463 at 1524.083 kb on - strand at 1524.175 kb on + strand, within Dsui_1463 at 1524.183 kb on - strand at 1524.195 kb on - strand, within Dsui_1463 at 1524.216 kb on - strand, within Dsui_1463 at 1524.302 kb on + strand at 1524.520 kb on + strand at 1524.540 kb on - strand at 1524.540 kb on - strand at 1524.715 kb on + strand at 1524.718 kb on - strand at 1524.783 kb on + strand at 1524.867 kb on + strand at 1524.883 kb on + strand at 1524.889 kb on - strand at 1524.890 kb on - strand at 1525.061 kb on - strand, within Dsui_1464 at 1525.206 kb on + strand, within Dsui_1464 at 1525.243 kb on + strand, within Dsui_1464 at 1525.380 kb on - strand at 1525.391 kb on + strand, within Dsui_1464
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 1,521,577 + -0.2 1,521,869 + Dsui_1462 0.34 -0.0 1,522,292 - Dsui_1462 0.87 -0.2 1,522,530 + -0.1 1,522,558 - +0.0 1,522,671 - +0.2 1,522,845 - +3.1 1,522,871 + Dsui_1463 0.19 -0.1 1,522,880 - Dsui_1463 0.19 +0.3 1,522,995 - Dsui_1463 0.25 -0.9 1,523,035 + Dsui_1463 0.27 -1.1 1,523,241 + +0.5 1,523,348 - Dsui_1463 0.43 +0.1 1,523,360 + Dsui_1463 0.44 -1.1 1,523,379 - Dsui_1463 0.45 +0.2 1,523,602 - +1.1 1,523,677 + Dsui_1463 0.60 -0.3 1,523,832 + +1.1 1,523,863 - +1.9 1,523,863 - -1.1 1,523,939 + Dsui_1463 0.74 -1.7 1,524,023 - Dsui_1463 0.78 -1.3 1,524,025 + Dsui_1463 0.78 -1.6 1,524,083 - +2.5 1,524,175 + Dsui_1463 0.86 +0.3 1,524,183 - +3.5 1,524,195 - Dsui_1463 0.87 +0.8 1,524,216 - Dsui_1463 0.88 +0.5 1,524,302 + +0.2 1,524,520 + +1.5 1,524,540 - -0.3 1,524,540 - -0.1 1,524,715 + +0.5 1,524,718 - -1.3 1,524,783 + +0.2 1,524,867 + +0.3 1,524,883 + +1.2 1,524,889 - +1.9 1,524,890 - +2.0 1,525,061 - Dsui_1464 0.21 -1.7 1,525,206 + Dsui_1464 0.30 -2.3 1,525,243 + Dsui_1464 0.33 +1.2 1,525,380 - +0.9 1,525,391 + Dsui_1464 0.42 +0.9
Or see this region's nucleotide sequence