Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0704 and Dsui_0705 are separated by 66 nucleotides Dsui_0705 and Dsui_0706 are separated by 65 nucleotides Dsui_0706 and Dsui_0707 overlap by 4 nucleotides
Dsui_0704: Dsui_0704 - RNA polymerase sigma-54 factor, at 698,768 to 700,246
_0704
Dsui_0705: Dsui_0705 - ABC-type (unclassified) transport system, ATPase component, at 700,313 to 701,059
_0705
Dsui_0706: Dsui_0706 - hypothetical protein, at 701,125 to 701,580
_0706
Dsui_0707: Dsui_0707 - protein RecA, at 701,577 to 702,599
_0707
Position (kb) 701
702 Strain fitness (log2 ratio) -2
-1
0
1
2 at 700.200 kb on - strand at 700.212 kb on - strand at 700.282 kb on + strand at 700.302 kb on + strand at 701.087 kb on - strand at 701.100 kb on + strand at 701.109 kb on - strand at 701.135 kb on + strand at 701.452 kb on + strand at 701.532 kb on - strand, within Dsui_0706 at 701.532 kb on - strand, within Dsui_0706 at 701.599 kb on + strand at 701.605 kb on + strand at 701.605 kb on + strand at 701.616 kb on + strand at 701.668 kb on + strand at 701.872 kb on - strand, within Dsui_0707 at 702.020 kb on + strand, within Dsui_0707 at 702.046 kb on - strand, within Dsui_0707 at 702.067 kb on + strand at 702.085 kb on - strand, within Dsui_0707 at 702.190 kb on - strand, within Dsui_0707 at 702.344 kb on + strand at 702.380 kb on - strand, within Dsui_0707 at 702.393 kb on + strand, within Dsui_0707 at 702.469 kb on - strand, within Dsui_0707
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 700,200 - -1.2 700,212 - -0.9 700,282 + -1.8 700,302 + -0.6 701,087 - -0.6 701,100 + -0.3 701,109 - -0.7 701,135 + +0.7 701,452 + +1.5 701,532 - Dsui_0706 0.89 -0.1 701,532 - Dsui_0706 0.89 -0.9 701,599 + +0.5 701,605 + -0.5 701,605 + -0.8 701,616 + -0.4 701,668 + +1.2 701,872 - Dsui_0707 0.29 +2.5 702,020 + Dsui_0707 0.43 -1.3 702,046 - Dsui_0707 0.46 +1.5 702,067 + +1.5 702,085 - Dsui_0707 0.50 +1.2 702,190 - Dsui_0707 0.60 -0.7 702,344 + -1.1 702,380 - Dsui_0707 0.78 +0.5 702,393 + Dsui_0707 0.80 -2.2 702,469 - Dsui_0707 0.87 +1.5
Or see this region's nucleotide sequence