Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0646 and Dsui_0647 overlap by 4 nucleotides Dsui_0647 and Dsui_0648 are separated by 22 nucleotides Dsui_0648 and Dsui_0649 are separated by 19 nucleotides Dsui_0649 and Dsui_0650 overlap by 4 nucleotides
Dsui_0646: Dsui_0646 - Lauroyl/myristoyl acyltransferase, at 640,465 to 641,355
_0646
Dsui_0647: Dsui_0647 - Lauroyl/myristoyl acyltransferase, at 641,352 to 642,209
_0647
Dsui_0648: Dsui_0648 - acetyltransferase, at 642,232 to 642,753
_0648
Dsui_0649: Dsui_0649 - diaminopimelate epimerase, at 642,773 to 643,603
_0649
Dsui_0650: Dsui_0650 - hypothetical protein, at 643,600 to 644,280
_0650
Position (kb) 642
643 Strain fitness (log2 ratio) -1
0
1 at 642.239 kb on + strand at 642.239 kb on + strand at 642.239 kb on + strand at 642.247 kb on - strand at 642.278 kb on + strand at 642.293 kb on - strand, within Dsui_0648 at 642.309 kb on - strand, within Dsui_0648 at 642.524 kb on - strand, within Dsui_0648 at 642.642 kb on + strand, within Dsui_0648 at 642.650 kb on - strand, within Dsui_0648 at 642.650 kb on - strand, within Dsui_0648 at 642.668 kb on + strand, within Dsui_0648 at 642.684 kb on - strand, within Dsui_0648 at 642.734 kb on - strand at 642.763 kb on + strand at 643.608 kb on + strand at 643.616 kb on - strand at 643.650 kb on - strand at 643.676 kb on - strand, within Dsui_0650 at 643.725 kb on + strand, within Dsui_0650
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 642,239 + +0.7 642,239 + -0.2 642,239 + +0.5 642,247 - -0.2 642,278 + +0.1 642,293 - Dsui_0648 0.12 +0.4 642,309 - Dsui_0648 0.15 +0.5 642,524 - Dsui_0648 0.56 +1.2 642,642 + Dsui_0648 0.79 -0.0 642,650 - Dsui_0648 0.80 +0.9 642,650 - Dsui_0648 0.80 +0.5 642,668 + Dsui_0648 0.84 -0.0 642,684 - Dsui_0648 0.87 -0.2 642,734 - +0.7 642,763 + +1.3 643,608 + +0.5 643,616 - -0.7 643,650 - -0.1 643,676 - Dsui_0650 0.11 -0.4 643,725 + Dsui_0650 0.18 -0.8
Or see this region's nucleotide sequence