Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0448 and Dsui_0449 are separated by 49 nucleotides Dsui_0449 and Dsui_0450 are separated by 72 nucleotides Dsui_0450 and Dsui_0451 are separated by 15 nucleotides Dsui_0451 and Dsui_0452 are separated by 8 nucleotides Dsui_0452 and Dsui_0453 are separated by 7 nucleotides
Dsui_0448: Dsui_0448 - hypothetical protein, at 455,178 to 456,083
_0448
Dsui_0449: Dsui_0449 - undecaprenyl-diphosphatase UppP, at 456,133 to 456,957
_0449
Dsui_0450: Dsui_0450 - MAF protein, at 457,030 to 457,650
_0450
Dsui_0451: Dsui_0451 - hypothetical protein, at 457,666 to 458,148
_0451
Dsui_0452: Dsui_0452 - iojap-like ribosome-associated protein, at 458,157 to 458,528
_0452
Dsui_0453: Dsui_0453 - nicotinate/nicotinamide nucleotide adenylyltransferase, at 458,536 to 459,210
_0453
Position (kb) 457
458 Strain fitness (log2 ratio) -2
-1
0
1
2 at 456.168 kb on - strand at 457.057 kb on - strand at 457.086 kb on - strand at 457.217 kb on - strand, within Dsui_0450 at 457.263 kb on + strand, within Dsui_0450 at 457.325 kb on - strand, within Dsui_0450 at 457.445 kb on - strand, within Dsui_0450 at 457.445 kb on - strand, within Dsui_0450 at 457.454 kb on + strand, within Dsui_0450 at 457.503 kb on + strand at 457.559 kb on + strand, within Dsui_0450 at 457.645 kb on + strand at 457.712 kb on + strand at 457.720 kb on - strand, within Dsui_0451 at 457.720 kb on - strand, within Dsui_0451 at 457.739 kb on - strand, within Dsui_0451 at 457.739 kb on - strand, within Dsui_0451 at 457.758 kb on + strand at 457.758 kb on + strand, within Dsui_0451 at 457.766 kb on - strand, within Dsui_0451 at 457.766 kb on - strand, within Dsui_0451 at 457.917 kb on - strand, within Dsui_0451 at 457.933 kb on - strand, within Dsui_0451 at 457.965 kb on - strand, within Dsui_0451 at 458.033 kb on - strand, within Dsui_0451 at 458.035 kb on + strand at 458.080 kb on - strand, within Dsui_0451 at 458.082 kb on + strand, within Dsui_0451 at 458.092 kb on + strand, within Dsui_0451 at 458.100 kb on - strand at 458.379 kb on + strand at 458.441 kb on + strand, within Dsui_0452 at 458.442 kb on - strand, within Dsui_0452 at 458.449 kb on - strand, within Dsui_0452 at 458.473 kb on + strand, within Dsui_0452 at 458.483 kb on + strand, within Dsui_0452 at 458.483 kb on + strand at 458.483 kb on + strand, within Dsui_0452 at 458.483 kb on + strand, within Dsui_0452 at 458.491 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 456,168 - -0.4 457,057 - +0.2 457,086 - -0.3 457,217 - Dsui_0450 0.30 -0.0 457,263 + Dsui_0450 0.38 -0.9 457,325 - Dsui_0450 0.48 -0.6 457,445 - Dsui_0450 0.67 +0.7 457,445 - Dsui_0450 0.67 +1.9 457,454 + Dsui_0450 0.68 -0.1 457,503 + +0.2 457,559 + Dsui_0450 0.85 -0.4 457,645 + +0.2 457,712 + +0.6 457,720 - Dsui_0451 0.11 +0.3 457,720 - Dsui_0451 0.11 +0.2 457,739 - Dsui_0451 0.15 -1.4 457,739 - Dsui_0451 0.15 -0.6 457,758 + +1.5 457,758 + Dsui_0451 0.19 +0.9 457,766 - Dsui_0451 0.21 +0.6 457,766 - Dsui_0451 0.21 -0.1 457,917 - Dsui_0451 0.52 +0.9 457,933 - Dsui_0451 0.55 +0.2 457,965 - Dsui_0451 0.62 -0.1 458,033 - Dsui_0451 0.76 +0.7 458,035 + +1.5 458,080 - Dsui_0451 0.86 +0.2 458,082 + Dsui_0451 0.86 -0.5 458,092 + Dsui_0451 0.88 -0.2 458,100 - +0.2 458,379 + +1.5 458,441 + Dsui_0452 0.76 -0.5 458,442 - Dsui_0452 0.77 -0.3 458,449 - Dsui_0452 0.78 -2.5 458,473 + Dsui_0452 0.85 -0.3 458,483 + Dsui_0452 0.88 -2.6 458,483 + -0.8 458,483 + Dsui_0452 0.88 +1.1 458,483 + Dsui_0452 0.88 +0.3 458,491 - -1.0
Or see this region's nucleotide sequence