Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0112 and Dsui_0113 are separated by 21 nucleotides Dsui_0113 and Dsui_0114 are separated by 13 nucleotides Dsui_0114 and Dsui_0115 are separated by 203 nucleotides Dsui_0115 and Dsui_0116 are separated by 116 nucleotides
Dsui_0112: Dsui_0112 - serine/threonine protein kinase, at 110,720 to 112,012
_0112
Dsui_0113: Dsui_0113 - hypothetical protein, at 112,034 to 112,297
_0113
Dsui_0114: Dsui_0114 - ammonium transporter, at 112,311 to 113,750
_0114
Dsui_0115: Dsui_0115 - hypothetical protein, at 113,954 to 114,448
_0115
Dsui_0116: Dsui_0116 - alkylhydroperoxidase AhpD family core domain protein, at 114,565 to 114,924
_0116
Position (kb)
112
113
114 Strain fitness (log2 ratio)
-1
0
1
2 at 111.335 kb on - strand, within Dsui_0112 at 111.440 kb on - strand, within Dsui_0112 at 111.472 kb on + strand, within Dsui_0112 at 111.480 kb on - strand, within Dsui_0112 at 111.504 kb on - strand, within Dsui_0112 at 111.507 kb on + strand, within Dsui_0112 at 111.515 kb on - strand, within Dsui_0112 at 111.532 kb on + strand, within Dsui_0112 at 111.540 kb on - strand at 111.654 kb on - strand at 111.656 kb on + strand, within Dsui_0112 at 111.664 kb on - strand, within Dsui_0112 at 111.738 kb on - strand, within Dsui_0112 at 111.753 kb on + strand, within Dsui_0112 at 111.866 kb on + strand, within Dsui_0112 at 111.867 kb on + strand, within Dsui_0112 at 111.877 kb on + strand, within Dsui_0112 at 111.885 kb on - strand at 111.892 kb on + strand at 111.905 kb on + strand at 111.910 kb on + strand at 111.988 kb on - strand at 112.040 kb on - strand at 112.052 kb on - strand at 112.059 kb on + strand at 112.060 kb on - strand at 112.228 kb on + strand, within Dsui_0113 at 112.236 kb on - strand, within Dsui_0113 at 112.268 kb on - strand at 112.299 kb on + strand at 112.300 kb on - strand at 112.300 kb on - strand at 112.300 kb on - strand at 112.385 kb on + strand at 112.389 kb on - strand at 112.431 kb on + strand at 112.434 kb on - strand at 112.562 kb on + strand, within Dsui_0114 at 112.562 kb on + strand, within Dsui_0114 at 112.570 kb on - strand, within Dsui_0114 at 112.601 kb on - strand at 112.613 kb on + strand, within Dsui_0114 at 112.620 kb on + strand, within Dsui_0114 at 112.623 kb on - strand, within Dsui_0114 at 112.740 kb on + strand at 112.748 kb on - strand, within Dsui_0114 at 112.763 kb on - strand, within Dsui_0114 at 112.886 kb on - strand at 112.913 kb on - strand, within Dsui_0114 at 112.918 kb on - strand, within Dsui_0114 at 112.928 kb on - strand, within Dsui_0114 at 112.935 kb on + strand, within Dsui_0114 at 112.941 kb on + strand at 112.949 kb on - strand, within Dsui_0114 at 112.966 kb on + strand at 112.990 kb on + strand, within Dsui_0114 at 112.990 kb on + strand at 112.990 kb on + strand, within Dsui_0114 at 113.030 kb on + strand, within Dsui_0114 at 113.115 kb on + strand at 113.146 kb on + strand at 113.173 kb on - strand, within Dsui_0114 at 113.187 kb on + strand, within Dsui_0114 at 113.255 kb on + strand at 113.287 kb on - strand, within Dsui_0114 at 113.321 kb on + strand, within Dsui_0114 at 113.336 kb on - strand, within Dsui_0114 at 113.383 kb on + strand at 113.427 kb on - strand, within Dsui_0114 at 113.437 kb on - strand, within Dsui_0114 at 113.437 kb on - strand, within Dsui_0114 at 113.443 kb on - strand, within Dsui_0114 at 113.446 kb on + strand, within Dsui_0114 at 113.457 kb on + strand, within Dsui_0114 at 113.462 kb on + strand, within Dsui_0114 at 113.497 kb on - strand, within Dsui_0114 at 113.533 kb on + strand at 113.543 kb on + strand, within Dsui_0114 at 113.636 kb on + strand at 113.644 kb on - strand at 113.685 kb on - strand at 113.726 kb on - strand at 113.751 kb on - strand at 113.795 kb on - strand at 113.805 kb on - strand at 113.896 kb on + strand at 113.896 kb on + strand at 113.904 kb on - strand at 113.904 kb on - strand at 113.985 kb on - strand at 113.999 kb on + strand at 114.006 kb on - strand, within Dsui_0115 at 114.030 kb on - strand, within Dsui_0115 at 114.051 kb on - strand, within Dsui_0115 at 114.062 kb on + strand, within Dsui_0115 at 114.121 kb on + strand, within Dsui_0115 at 114.185 kb on - strand, within Dsui_0115 at 114.206 kb on - strand, within Dsui_0115 at 114.285 kb on + strand, within Dsui_0115 at 114.293 kb on - strand, within Dsui_0115 at 114.331 kb on - strand, within Dsui_0115 at 114.421 kb on + strand at 114.444 kb on - strand at 114.496 kb on - strand at 114.499 kb on + strand at 114.514 kb on + strand at 114.562 kb on + strand at 114.615 kb on - strand at 114.621 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 111,335 - Dsui_0112 0.48 +0.8 111,440 - Dsui_0112 0.56 -0.2 111,472 + Dsui_0112 0.58 +0.2 111,480 - Dsui_0112 0.59 -0.4 111,504 - Dsui_0112 0.61 -0.1 111,507 + Dsui_0112 0.61 +0.5 111,515 - Dsui_0112 0.61 +0.1 111,532 + Dsui_0112 0.63 +0.2 111,540 - -0.4 111,654 - +0.4 111,656 + Dsui_0112 0.72 +0.2 111,664 - Dsui_0112 0.73 +0.3 111,738 - Dsui_0112 0.79 +0.1 111,753 + Dsui_0112 0.80 -0.4 111,866 + Dsui_0112 0.89 -0.2 111,867 + Dsui_0112 0.89 +0.3 111,877 + Dsui_0112 0.89 +0.6 111,885 - +0.7 111,892 + +0.9 111,905 + +0.4 111,910 + +0.1 111,988 - -1.4 112,040 - -0.3 112,052 - +0.7 112,059 + +0.4 112,060 - +0.1 112,228 + Dsui_0113 0.73 +0.4 112,236 - Dsui_0113 0.77 +1.2 112,268 - +1.9 112,299 + +1.6 112,300 - -0.4 112,300 - -0.1 112,300 - +0.9 112,385 + -0.9 112,389 - +1.9 112,431 + -0.4 112,434 - +1.1 112,562 + Dsui_0114 0.17 -0.9 112,562 + Dsui_0114 0.17 -0.4 112,570 - Dsui_0114 0.18 +0.6 112,601 - +0.3 112,613 + Dsui_0114 0.21 -0.4 112,620 + Dsui_0114 0.21 -0.9 112,623 - Dsui_0114 0.22 +0.1 112,740 + +1.1 112,748 - Dsui_0114 0.30 -0.4 112,763 - Dsui_0114 0.31 -0.5 112,886 - +1.2 112,913 - Dsui_0114 0.42 +0.1 112,918 - Dsui_0114 0.42 -0.4 112,928 - Dsui_0114 0.43 +0.7 112,935 + Dsui_0114 0.43 -1.2 112,941 + +1.3 112,949 - Dsui_0114 0.44 +0.0 112,966 + +1.6 112,990 + Dsui_0114 0.47 -1.4 112,990 + +0.1 112,990 + Dsui_0114 0.47 +0.8 113,030 + Dsui_0114 0.50 +0.2 113,115 + -0.9 113,146 + +1.6 113,173 - Dsui_0114 0.60 +0.0 113,187 + Dsui_0114 0.61 -0.1 113,255 + -0.9 113,287 - Dsui_0114 0.68 +0.1 113,321 + Dsui_0114 0.70 +0.1 113,336 - Dsui_0114 0.71 -0.5 113,383 + +1.6 113,427 - Dsui_0114 0.78 +0.3 113,437 - Dsui_0114 0.78 +0.2 113,437 - Dsui_0114 0.78 -0.3 113,443 - Dsui_0114 0.79 +0.5 113,446 + Dsui_0114 0.79 -0.1 113,457 + Dsui_0114 0.80 +0.9 113,462 + Dsui_0114 0.80 -0.5 113,497 - Dsui_0114 0.82 -0.4 113,533 + -0.9 113,543 + Dsui_0114 0.86 -0.6 113,636 + +0.6 113,644 - -0.7 113,685 - +0.2 113,726 - +0.6 113,751 - +0.8 113,795 - -0.2 113,805 - +0.2 113,896 + +0.3 113,896 + -0.9 113,904 - +0.2 113,904 - -1.3 113,985 - +0.1 113,999 + +0.4 114,006 - Dsui_0115 0.11 +0.1 114,030 - Dsui_0115 0.15 +0.6 114,051 - Dsui_0115 0.20 +0.4 114,062 + Dsui_0115 0.22 +0.2 114,121 + Dsui_0115 0.34 +0.1 114,185 - Dsui_0115 0.47 +0.0 114,206 - Dsui_0115 0.51 -0.2 114,285 + Dsui_0115 0.67 +0.1 114,293 - Dsui_0115 0.68 +0.3 114,331 - Dsui_0115 0.76 +0.5 114,421 + -0.1 114,444 - -0.3 114,496 - +0.6 114,499 + +0.2 114,514 + +0.1 114,562 + +0.5 114,615 - +0.1 114,621 + -0.4
Or see this region's nucleotide sequence