Strain Fitness in Shewanella amazonensis SB2B around Sama_2676

Experiment: Gelatin

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Gelatin
3,200,887	-				+0.7
3,200,887	-				+0.3
3,200,887	-				-0.9
3,200,896	-				-1.4
3,200,970	+				-0.2
3,200,971	-				+1.3
3,201,002	+				-0.8
3,201,002	+				+0.0
3,201,002	+				-0.9
3,201,002	+				+1.0
3,201,003	-				-0.9
3,201,003	-				-0.5
3,201,003	-				-0.3
3,201,003	-				+0.1
3,201,081	-		Sama_2675	0.12	-0.1
3,201,082	+		Sama_2675	0.12	-0.7
3,201,083	-		Sama_2675	0.12	-1.2
3,201,098	+		Sama_2675	0.15	+0.5
3,201,098	+		Sama_2675	0.15	-0.7
3,201,098	+		Sama_2675	0.15	+0.0
3,201,098	+		Sama_2675	0.15	+1.4
3,201,098	+		Sama_2675	0.15	+0.7
3,201,098	+		Sama_2675	0.15	+0.7
3,201,098	+		Sama_2675	0.15	+0.5
3,201,098	+		Sama_2675	0.15	+0.4
3,201,099	-		Sama_2675	0.15	+0.1
3,201,099	-		Sama_2675	0.15	-0.5
3,201,099	-		Sama_2675	0.15	+0.8
3,201,099	-		Sama_2675	0.15	+0.5
3,201,099	-		Sama_2675	0.15	+0.4
3,201,099	-		Sama_2675	0.15	+0.8
3,201,104	+		Sama_2675	0.16	+0.8
3,201,105	-		Sama_2675	0.16	+0.5
3,201,105	-		Sama_2675	0.16	+0.3
3,201,105	-		Sama_2675	0.16	-0.8
3,201,105	-		Sama_2675	0.16	-0.6
3,201,112	+		Sama_2675	0.17	+0.1
3,201,112	+		Sama_2675	0.17	-0.8
3,201,113	-		Sama_2675	0.17	+0.2
3,201,365	-		Sama_2675	0.59	+0.1
3,201,481	+		Sama_2675	0.78	+0.1
3,201,481	+		Sama_2675	0.78	+0.0
3,201,538	+		Sama_2675	0.88	+0.6
3,201,555	+				-0.5
3,201,555	+				+1.0
3,201,556	-				+1.1
3,201,556	-				+0.3
3,201,563	+				+0.2
3,201,563	+				-0.4
3,201,563	+				-0.9
3,201,612	-				-0.2
3,201,612	-				+0.7
3,201,684	+				+0.9
3,201,685	-				+1.5
3,201,696	+				+0.5
3,201,743	+				+1.0
3,201,743	+				-0.0
3,201,744	-				-0.7
3,201,744	-				-0.6
3,201,744	-				-0.5
3,201,745	+				-0.2
3,201,773	+				+0.1
3,201,863	+				-0.5
3,201,863	+				-1.1
3,201,863	+				-0.8
3,201,863	+				-0.2
3,201,863	+				-1.8
3,201,863	+				-1.0
3,201,863	+				-1.0
3,201,863	+				-0.1
3,201,864	-				-0.9
3,201,864	-				-1.1
3,201,864	-				-1.3
3,201,864	-				-0.3
3,201,864	-				-1.9
3,201,864	-				-0.5
3,201,864	-				-1.8
3,201,864	-				-0.9
3,201,864	-				+0.3
3,201,864	-				-1.5
3,201,864	-				-1.5
3,201,864	-				-1.7
3,201,864	-				-1.9
3,201,867	+				-1.5
3,201,867	+				+1.5
3,201,867	+				-1.8
3,201,867	+				-0.9
3,201,867	+				-2.1
3,201,867	+				-2.2
3,201,867	+				-0.9
3,201,867	+				+0.3
3,201,867	+				-0.9
3,201,867	+				+0.9
3,201,867	+				-0.2
3,201,867	+				-0.9
3,201,867	+				-1.1
3,201,868	-				-0.3
3,201,868	-				+1.3
3,201,868	-				-2.1
3,201,868	-				-2.3
3,201,868	-				-1.6
3,201,868	-				-0.5
3,201,868	-				-2.8
3,201,868	-				-0.2
3,201,887	+				-1.1
3,201,887	+				-0.6
3,201,888	-				-1.2
3,201,901	+				-2.5
3,201,902	-				-1.1
3,201,970	+				-1.3
3,201,971	-				-0.9
3,202,066	+				-1.1
3,202,114	+				-1.7
3,202,114	+				-2.7
3,202,114	+				-0.3
3,202,114	+				+0.5
3,202,115	-				-0.7
3,202,115	-				-1.3
3,202,115	-				-0.5
3,202,115	-				+0.3
3,202,290	+		Sama_2676	0.13	-0.5
3,202,290	+		Sama_2676	0.13	-1.1
3,202,291	-		Sama_2676	0.13	-0.5
3,202,291	-		Sama_2676	0.13	-2.7
3,202,387	-		Sama_2676	0.16	+0.3
3,202,387	-		Sama_2676	0.16	-1.8
3,202,402	+		Sama_2676	0.17	-0.1
3,202,402	+		Sama_2676	0.17	-1.8
3,202,403	-		Sama_2676	0.17	-1.8
3,202,403	-		Sama_2676	0.17	-1.8
3,202,403	-		Sama_2676	0.17	-1.3
3,202,403	-		Sama_2676	0.17	-1.2
3,202,403	-		Sama_2676	0.17	-1.5
3,202,403	-		Sama_2676	0.17	-2.3
3,202,403	-		Sama_2676	0.17	-2.5
3,202,436	+		Sama_2676	0.18	-0.5
3,202,437	-		Sama_2676	0.18	-2.0
3,202,446	+		Sama_2676	0.18	-1.8
3,202,497	+		Sama_2676	0.20	+0.3
3,202,497	+		Sama_2676	0.20	-0.8
3,202,497	+		Sama_2676	0.20	-1.7
3,202,497	+		Sama_2676	0.20	-1.5
3,202,497	+		Sama_2676	0.20	-1.0
3,202,498	-		Sama_2676	0.20	-0.8
3,202,508	-		Sama_2676	0.20	-1.0
3,202,555	+		Sama_2676	0.22	-0.5
3,202,555	+		Sama_2676	0.22	-2.7
3,202,555	+		Sama_2676	0.22	-2.3
3,202,555	+		Sama_2676	0.22	-0.6
3,202,555	+		Sama_2676	0.22	-0.9
3,202,556	-		Sama_2676	0.22	+1.0
3,202,673	+		Sama_2676	0.25	-1.7
3,202,673	+		Sama_2676	0.25	-0.2
3,202,674	-		Sama_2676	0.25	-1.2
3,202,705	+		Sama_2676	0.26	+0.5
3,202,706	-		Sama_2676	0.26	-2.1
3,202,706	-		Sama_2676	0.26	-0.5
3,202,718	+		Sama_2676	0.27	-1.8
3,202,719	-		Sama_2676	0.27	-0.8
3,202,725	+		Sama_2676	0.27	-0.6
3,202,725	+		Sama_2676	0.27	-1.6
3,202,746	+		Sama_2676	0.28	-0.7
3,202,747	-		Sama_2676	0.28	-1.4
3,202,778	+		Sama_2676	0.29	-1.1
3,202,779	-		Sama_2676	0.29	-1.6
3,202,850	+		Sama_2676	0.31	-1.7
3,202,850	+		Sama_2676	0.31	-0.5
3,202,851	-		Sama_2676	0.31	-1.7
3,202,873	+		Sama_2676	0.32	-0.2
3,202,874	-		Sama_2676	0.32	-1.1
3,202,874	-		Sama_2676	0.32	+0.0
3,202,921	-		Sama_2676	0.33	-3.5
3,202,947	-		Sama_2676	0.34	+0.8
3,203,053	+		Sama_2676	0.37	-1.3
3,203,054	-		Sama_2676	0.37	-0.7
3,203,100	+		Sama_2676	0.39	-1.1
3,203,100	+		Sama_2676	0.39	+0.5
3,203,212	+		Sama_2676	0.42	-2.9
3,203,213	-		Sama_2676	0.42	+0.2
3,203,213	-		Sama_2676	0.42	+0.0
3,203,213	-		Sama_2676	0.42	-0.7
3,203,213	-		Sama_2676	0.42	-1.2
3,203,257	+		Sama_2676	0.44	+0.5
3,203,293	+		Sama_2676	0.45	-1.4
3,203,294	-		Sama_2676	0.45	-1.5
3,203,294	-		Sama_2676	0.45	-0.3
3,203,410	+		Sama_2676	0.49	-1.1
3,203,410	+		Sama_2676	0.49	-2.7
3,203,411	-		Sama_2676	0.49	+0.2
3,203,435	+		Sama_2676	0.49	-1.4
3,203,435	+		Sama_2676	0.49	+1.0
3,203,436	-		Sama_2676	0.49	-0.2
3,203,436	-		Sama_2676	0.49	+0.5
3,203,436	-		Sama_2676	0.49	+0.5
3,203,436	-		Sama_2676	0.49	-1.1
3,203,439	+		Sama_2676	0.49	-0.5
3,203,439	+		Sama_2676	0.49	-0.2
3,203,440	-		Sama_2676	0.49	-1.5
3,203,440	-		Sama_2676	0.49	-1.3
3,203,469	+		Sama_2676	0.50	+0.5
3,203,490	+		Sama_2676	0.51	-1.2
3,203,490	+		Sama_2676	0.51	+0.0
3,203,610	-		Sama_2676	0.55	-1.1
3,203,620	+		Sama_2676	0.55	-0.9
3,203,620	+		Sama_2676	0.55	-0.8
3,203,620	+		Sama_2676	0.55	-3.3
3,203,620	+		Sama_2676	0.55	-1.1
3,203,620	+		Sama_2676	0.55	+0.2
3,203,621	-		Sama_2676	0.55	-1.5
3,203,621	-		Sama_2676	0.55	-1.8
3,203,621	-		Sama_2676	0.55	-0.1
3,203,672	+		Sama_2676	0.57	-2.1
3,203,673	-		Sama_2676	0.57	-1.5
3,203,673	-		Sama_2676	0.57	-0.5
3,203,673	-		Sama_2676	0.57	-2.9
3,203,876	-		Sama_2676	0.63	-1.1
3,203,876	-		Sama_2676	0.63	-0.8
3,203,878	+		Sama_2676	0.63	-1.2
3,203,879	-		Sama_2676	0.63	-1.2
3,204,027	-		Sama_2676	0.68	-0.5
3,204,141	-		Sama_2676	0.72	-0.7
3,204,228	+		Sama_2676	0.74	-0.3
3,204,228	+		Sama_2676	0.74	-3.3
3,204,228	+		Sama_2676	0.74	-1.7
3,204,228	+		Sama_2676	0.74	-1.1
3,204,228	+		Sama_2676	0.74	+0.0
3,204,353	+		Sama_2676	0.78	-1.7
3,204,353	+		Sama_2676	0.78	-1.6
3,204,354	-		Sama_2676	0.78	-0.2
3,204,354	-		Sama_2676	0.78	+1.2
3,204,365	+		Sama_2676	0.79	-2.7
3,204,365	+		Sama_2676	0.79	-1.9
3,204,365	+		Sama_2676	0.79	-1.8
3,204,365	+		Sama_2676	0.79	-1.1
3,204,365	+		Sama_2676	0.79	-1.4
3,204,365	+		Sama_2676	0.79	-0.5
3,204,365	+		Sama_2676	0.79	-1.5
3,204,365	+		Sama_2676	0.79	-2.9
3,204,365	+		Sama_2676	0.79	+0.5
3,204,366	-		Sama_2676	0.79	-1.1
3,204,366	-		Sama_2676	0.79	-0.9
3,204,366	-		Sama_2676	0.79	-1.8
3,204,366	-		Sama_2676	0.79	-1.4
3,204,366	-		Sama_2676	0.79	-1.6
3,204,366	-		Sama_2676	0.79	-1.8
3,204,366	-		Sama_2676	0.79	-0.5
3,204,368	+		Sama_2676	0.79	-0.5
3,204,368	+		Sama_2676	0.79	-1.7
3,204,368	+		Sama_2676	0.79	-1.3
3,204,368	+		Sama_2676	0.79	-1.6
3,204,368	+		Sama_2676	0.79	+0.1
3,204,369	-		Sama_2676	0.79	+0.2
3,204,369	-		Sama_2676	0.79	-0.7
3,204,416	+		Sama_2676	0.80	-2.3
3,204,416	+		Sama_2676	0.80	-1.1
3,204,416	+		Sama_2676	0.80	-3.8
3,204,416	+		Sama_2676	0.80	-0.5
3,204,421	+		Sama_2676	0.80	-1.7
3,204,421	+		Sama_2676	0.80	-0.1
3,204,421	+		Sama_2676	0.80	-2.1
3,204,421	+		Sama_2676	0.80	-0.7
3,204,421	+		Sama_2676	0.80	-1.7
3,204,422	-		Sama_2676	0.80	-0.3
3,204,573	+		Sama_2676	0.85	-1.4
3,204,573	+		Sama_2676	0.85	-0.4
3,204,703	-		Sama_2676	0.89	-2.3
3,204,722	-		Sama_2676	0.90	-0.9
3,204,836	+				-1.6
3,204,836	+				-2.2
3,204,836	+				-3.5
3,204,837	-				-1.8
3,204,837	-				-2.1
3,204,846	+				-2.1
3,204,853	+				-0.5
3,204,853	+				-0.4
3,204,853	+				-0.9
3,204,853	+				-1.1
3,204,853	+				-0.2
3,204,853	+				-1.7
3,204,853	+				-0.9
3,204,854	-				-0.8
3,204,854	-				-0.3
3,204,854	-				-0.3
3,204,854	-				-0.2
3,204,854	-				+0.1
3,204,854	-				+0.5
3,204,855	+				-2.3
3,204,855	+				-0.8
3,204,856	-				-1.3
3,204,949	+				-1.9
3,204,950	-				-1.2
3,204,950	-				-2.7
3,204,965	+				-1.5
3,204,966	-				+0.3
3,204,966	-				-1.0
3,205,008	+				-1.4
3,205,117	+				-0.2
3,205,117	+				-0.4
3,205,119	+				+0.3
3,205,119	+				+0.1
3,205,119	+				-0.1
3,205,119	+				-0.1
3,205,119	+				-0.3
3,205,120	-				+0.8
3,205,120	-				+0.1
3,205,120	-				-1.9
3,205,120	-				-0.7
3,205,120	-				+0.8
3,205,120	-				-0.0
3,205,137	+				+0.4
3,205,138	-				-1.1
3,205,172	+				-0.1
3,205,211	+		Sama_2677	0.27	-0.9
3,205,211	+		Sama_2677	0.27	+0.2
3,205,237	-		Sama_2677	0.41	-0.5
3,205,522	-				+1.1
3,205,522	-				+0.9
3,205,664	-		Sama_2678	0.14	+0.2
3,205,748	-		Sama_2678	0.19	-0.1
3,205,784	+		Sama_2678	0.21	-1.3
3,205,785	-		Sama_2678	0.21	+1.2
3,205,796	-		Sama_2678	0.21	-1.1
3,205,808	-		Sama_2678	0.22	-1.4
3,205,814	-		Sama_2678	0.22	-1.4
3,205,814	-		Sama_2678	0.22	-0.1
3,205,889	-		Sama_2678	0.27	-0.8
3,205,988	+		Sama_2678	0.33	+2.1
3,205,988	+		Sama_2678	0.33	+0.5
3,205,989	-		Sama_2678	0.33	+0.2
3,206,008	-		Sama_2678	0.34	-1.0