Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c09590

Experiment: m.b. Ceftazidime 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c09560 and PGA1_c09570 are separated by 3 nucleotidesPGA1_c09570 and PGA1_c09580 are separated by 4 nucleotidesPGA1_c09580 and PGA1_c09590 are separated by 79 nucleotidesPGA1_c09590 and PGA1_c09600 are separated by 75 nucleotides PGA1_c09560: PGA1_c09560 - UDP-N-acetylmuramoylalanine--D-glutamate ligase MurD, at 981,030 to 982,427 _c09560 PGA1_c09570: PGA1_c09570 - putative HTH-type transcriptional regulator, MarR family, at 982,431 to 982,874 _c09570 PGA1_c09580: PGA1_c09580 - antibiotic biosynthesis monooxygenase-like protein, at 982,879 to 983,172 _c09580 PGA1_c09590: PGA1_c09590 - uncharacterized protein YhiN, at 983,252 to 984,433 _c09590 PGA1_c09600: PGA1_c09600 - cell division protein ftsW, at 984,509 to 985,777 _c09600 Position (kb) 983 984 985Strain fitness (log2 ratio) -2 -1 0 1at 982.421 kb on + strandat 982.423 kb on + strandat 982.423 kb on + strandat 982.531 kb on - strand, within PGA1_c09570at 982.564 kb on + strand, within PGA1_c09570at 982.590 kb on + strand, within PGA1_c09570at 982.590 kb on + strand, within PGA1_c09570at 982.594 kb on - strand, within PGA1_c09570at 982.598 kb on - strand, within PGA1_c09570at 982.608 kb on - strand, within PGA1_c09570at 982.726 kb on - strand, within PGA1_c09570at 982.727 kb on - strand, within PGA1_c09570at 982.820 kb on + strand, within PGA1_c09570at 982.828 kb on - strand, within PGA1_c09570at 982.830 kb on + strandat 982.830 kb on + strandat 982.849 kb on - strandat 982.882 kb on + strandat 982.885 kb on - strandat 982.885 kb on - strandat 982.890 kb on - strandat 982.913 kb on + strand, within PGA1_c09580at 982.913 kb on + strand, within PGA1_c09580at 982.921 kb on - strand, within PGA1_c09580at 983.013 kb on + strand, within PGA1_c09580at 983.085 kb on - strand, within PGA1_c09580at 983.132 kb on - strand, within PGA1_c09580at 983.138 kb on - strand, within PGA1_c09580at 983.250 kb on + strandat 983.250 kb on + strandat 983.258 kb on - strandat 983.284 kb on - strandat 983.297 kb on - strandat 983.297 kb on - strandat 983.330 kb on + strandat 983.442 kb on - strand, within PGA1_c09590at 983.444 kb on + strand, within PGA1_c09590at 983.519 kb on + strand, within PGA1_c09590at 983.538 kb on + strand, within PGA1_c09590at 983.539 kb on + strand, within PGA1_c09590at 983.672 kb on + strand, within PGA1_c09590at 983.687 kb on + strand, within PGA1_c09590at 983.695 kb on - strand, within PGA1_c09590at 983.695 kb on - strand, within PGA1_c09590at 983.741 kb on - strand, within PGA1_c09590at 983.743 kb on + strand, within PGA1_c09590at 983.798 kb on - strand, within PGA1_c09590at 983.798 kb on - strand, within PGA1_c09590at 983.809 kb on + strand, within PGA1_c09590at 983.817 kb on - strand, within PGA1_c09590at 983.817 kb on - strand, within PGA1_c09590at 983.876 kb on - strand, within PGA1_c09590at 983.916 kb on - strand, within PGA1_c09590at 983.936 kb on - strand, within PGA1_c09590at 983.982 kb on + strand, within PGA1_c09590at 984.036 kb on - strand, within PGA1_c09590at 984.050 kb on + strand, within PGA1_c09590at 984.073 kb on + strand, within PGA1_c09590at 984.138 kb on + strand, within PGA1_c09590at 984.381 kb on + strandat 984.386 kb on + strandat 984.394 kb on - strandat 984.394 kb on - strandat 984.394 kb on - strandat 984.412 kb on + strandat 984.413 kb on + strandat 984.413 kb on + strandat 984.420 kb on - strandat 984.421 kb on - strandat 984.477 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml
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982,421 + +0.0
982,423 + -0.5
982,423 + +0.2
982,531 - PGA1_c09570 0.23 +1.6
982,564 + PGA1_c09570 0.30 -0.6
982,590 + PGA1_c09570 0.36 -0.2
982,590 + PGA1_c09570 0.36 -0.6
982,594 - PGA1_c09570 0.37 +0.2
982,598 - PGA1_c09570 0.38 +0.2
982,608 - PGA1_c09570 0.40 -0.8
982,726 - PGA1_c09570 0.66 +0.7
982,727 - PGA1_c09570 0.67 -1.4
982,820 + PGA1_c09570 0.88 +0.5
982,828 - PGA1_c09570 0.89 -1.0
982,830 + -0.3
982,830 + +1.2
982,849 - -0.5
982,882 + -0.5
982,885 - -1.2
982,885 - -1.0
982,890 - +0.1
982,913 + PGA1_c09580 0.12 +0.4
982,913 + PGA1_c09580 0.12 +1.0
982,921 - PGA1_c09580 0.14 -1.1
983,013 + PGA1_c09580 0.46 -0.6
983,085 - PGA1_c09580 0.70 +1.1
983,132 - PGA1_c09580 0.86 +0.2
983,138 - PGA1_c09580 0.88 +1.3
983,250 + -1.0
983,250 + +0.5
983,258 - -0.2
983,284 - -0.8
983,297 - -0.4
983,297 - +0.8
983,330 + -1.9
983,442 - PGA1_c09590 0.16 +0.0
983,444 + PGA1_c09590 0.16 +1.6
983,519 + PGA1_c09590 0.23 -0.6
983,538 + PGA1_c09590 0.24 -1.8
983,539 + PGA1_c09590 0.24 -1.0
983,672 + PGA1_c09590 0.36 -1.2
983,687 + PGA1_c09590 0.37 -0.4
983,695 - PGA1_c09590 0.37 -0.2
983,695 - PGA1_c09590 0.37 +0.3
983,741 - PGA1_c09590 0.41 +0.1
983,743 + PGA1_c09590 0.42 -1.1
983,798 - PGA1_c09590 0.46 -1.5
983,798 - PGA1_c09590 0.46 +0.5
983,809 + PGA1_c09590 0.47 +0.3
983,817 - PGA1_c09590 0.48 -0.3
983,817 - PGA1_c09590 0.48 -1.5
983,876 - PGA1_c09590 0.53 -0.3
983,916 - PGA1_c09590 0.56 -1.8
983,936 - PGA1_c09590 0.58 +0.1
983,982 + PGA1_c09590 0.62 -1.5
984,036 - PGA1_c09590 0.66 -0.4
984,050 + PGA1_c09590 0.68 -0.3
984,073 + PGA1_c09590 0.69 -0.2
984,138 + PGA1_c09590 0.75 +0.8
984,381 + +0.6
984,386 + -1.3
984,394 - +1.1
984,394 - -1.6
984,394 - +0.5
984,412 + +0.5
984,413 + +0.7
984,413 + +0.2
984,420 - +0.2
984,421 - +0.8
984,477 - +0.6

Or see this region's nucleotide sequence