Strain Fitness in Marinobacter adhaerens HP15 around HP15_876

Experiment: m.b. Chloride 1000 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_874 and HP15_875 are separated by 86 nucleotidesHP15_875 and HP15_876 are separated by 27 nucleotidesHP15_876 and HP15_877 overlap by 4 nucleotides HP15_874: HP15_874 - intracellular protease, PfpI family, at 892,614 to 893,183 _874 HP15_875: HP15_875 - protein containing DUF159, at 893,270 to 893,983 _875 HP15_876: HP15_876 - class I peptide chain release factor, at 894,011 to 894,424 _876 HP15_877: HP15_877 - lipase/esterase, at 894,421 to 895,491 _877 Position (kb) 894 895Strain fitness (log2 ratio) -2 -1 0 1at 893.018 kb on - strand, within HP15_874at 893.110 kb on + strand, within HP15_874at 893.261 kb on + strandat 893.267 kb on + strandat 893.275 kb on - strandat 893.337 kb on + strandat 893.416 kb on + strand, within HP15_875at 893.424 kb on - strand, within HP15_875at 893.465 kb on + strand, within HP15_875at 893.471 kb on - strand, within HP15_875at 893.540 kb on - strand, within HP15_875at 893.662 kb on + strand, within HP15_875at 893.712 kb on - strand, within HP15_875at 893.901 kb on - strand, within HP15_875at 893.944 kb on - strandat 893.978 kb on + strandat 893.995 kb on + strandat 894.010 kb on - strandat 894.030 kb on + strandat 894.062 kb on + strand, within HP15_876at 894.073 kb on + strand, within HP15_876at 894.098 kb on - strand, within HP15_876at 894.406 kb on + strandat 894.413 kb on + strandat 894.414 kb on - strandat 894.418 kb on + strandat 894.433 kb on - strandat 894.459 kb on + strandat 894.470 kb on + strandat 894.470 kb on + strandat 894.470 kb on + strandat 894.470 kb on + strandat 894.478 kb on - strandat 894.478 kb on - strandat 894.478 kb on - strandat 894.478 kb on - strandat 894.487 kb on + strandat 894.601 kb on - strand, within HP15_877at 894.618 kb on - strand, within HP15_877at 894.647 kb on + strand, within HP15_877at 894.647 kb on - strand, within HP15_877at 894.647 kb on - strand, within HP15_877at 894.666 kb on + strand, within HP15_877at 894.733 kb on + strand, within HP15_877at 894.760 kb on - strand, within HP15_877at 894.774 kb on - strand, within HP15_877at 894.784 kb on - strand, within HP15_877at 894.842 kb on - strand, within HP15_877at 894.980 kb on - strand, within HP15_877at 894.991 kb on - strand, within HP15_877at 894.997 kb on + strand, within HP15_877at 894.997 kb on + strand, within HP15_877at 895.017 kb on + strand, within HP15_877at 895.017 kb on + strand, within HP15_877at 895.017 kb on + strand, within HP15_877at 895.017 kb on + strand, within HP15_877at 895.017 kb on + strand, within HP15_877at 895.025 kb on - strand, within HP15_877at 895.025 kb on - strand, within HP15_877at 895.025 kb on - strand, within HP15_877at 895.025 kb on - strand, within HP15_877at 895.114 kb on - strand, within HP15_877at 895.213 kb on + strand, within HP15_877at 895.215 kb on - strand, within HP15_877at 895.236 kb on - strand, within HP15_877at 895.236 kb on - strand, within HP15_877at 895.241 kb on - strand, within HP15_877at 895.374 kb on + strand, within HP15_877

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 1000 mM
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893,018 - HP15_874 0.71 -0.2
893,110 + HP15_874 0.87 +0.2
893,261 + -0.8
893,267 + +0.7
893,275 - -0.2
893,337 + -0.2
893,416 + HP15_875 0.20 +0.2
893,424 - HP15_875 0.22 +0.8
893,465 + HP15_875 0.27 +0.4
893,471 - HP15_875 0.28 -0.0
893,540 - HP15_875 0.38 +1.4
893,662 + HP15_875 0.55 +0.7
893,712 - HP15_875 0.62 -0.2
893,901 - HP15_875 0.88 +0.0
893,944 - +0.2
893,978 + +1.2
893,995 + -0.6
894,010 - +0.2
894,030 + +0.3
894,062 + HP15_876 0.12 +0.4
894,073 + HP15_876 0.15 -0.8
894,098 - HP15_876 0.21 -2.0
894,406 + +0.1
894,413 + +0.7
894,414 - +0.7
894,418 + +1.4
894,433 - -0.5
894,459 + +0.1
894,470 + -1.6
894,470 + +1.0
894,470 + +0.2
894,470 + -0.1
894,478 - +0.5
894,478 - -0.3
894,478 - -0.6
894,478 - +0.2
894,487 + -0.6
894,601 - HP15_877 0.17 -0.7
894,618 - HP15_877 0.18 +0.5
894,647 + HP15_877 0.21 +0.4
894,647 - HP15_877 0.21 +1.1
894,647 - HP15_877 0.21 -0.5
894,666 + HP15_877 0.23 -0.3
894,733 + HP15_877 0.29 +0.8
894,760 - HP15_877 0.32 -0.0
894,774 - HP15_877 0.33 +0.6
894,784 - HP15_877 0.34 +0.0
894,842 - HP15_877 0.39 -0.3
894,980 - HP15_877 0.52 -0.6
894,991 - HP15_877 0.53 +0.4
894,997 + HP15_877 0.54 -0.2
894,997 + HP15_877 0.54 +0.4
895,017 + HP15_877 0.56 -0.8
895,017 + HP15_877 0.56 -0.3
895,017 + HP15_877 0.56 +0.4
895,017 + HP15_877 0.56 -0.1
895,017 + HP15_877 0.56 -0.5
895,025 - HP15_877 0.56 -0.4
895,025 - HP15_877 0.56 +0.4
895,025 - HP15_877 0.56 -0.0
895,025 - HP15_877 0.56 -1.6
895,114 - HP15_877 0.65 +0.1
895,213 + HP15_877 0.74 +0.9
895,215 - HP15_877 0.74 +0.5
895,236 - HP15_877 0.76 +0.1
895,236 - HP15_877 0.76 -0.1
895,241 - HP15_877 0.77 +0.8
895,374 + HP15_877 0.89 +1.2

Or see this region's nucleotide sequence