Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01690 and PGA1_262p01700 are separated by 22 nucleotides PGA1_262p01700 and PGA1_262p01710 are separated by 15 nucleotides PGA1_262p01710 and PGA1_262p01720 are separated by 12 nucleotides
PGA1_262p01690: PGA1_262p01690 - peptidase S15, at 184,437 to 186,416
_262p01690
PGA1_262p01700: PGA1_262p01700 - putative ABC transporter, solute-binding protein, at 186,439 to 187,989
_262p01700
PGA1_262p01710: PGA1_262p01710 - putative glutathione transport system permease protein, at 188,005 to 188,943
_262p01710
PGA1_262p01720: PGA1_262p01720 - putative glutathione transport system permease protein, at 188,956 to 189,834
_262p01720
Position (kb) 186
187
188 Strain fitness (log2 ratio) -2
-1
0
1
2 at 185.501 kb on + strand, within PGA1_262p01690 at 185.528 kb on - strand, within PGA1_262p01690 at 185.663 kb on - strand, within PGA1_262p01690 at 185.687 kb on - strand, within PGA1_262p01690 at 185.708 kb on + strand, within PGA1_262p01690 at 185.791 kb on + strand, within PGA1_262p01690 at 185.799 kb on - strand, within PGA1_262p01690 at 185.838 kb on - strand, within PGA1_262p01690 at 185.840 kb on + strand, within PGA1_262p01690 at 185.899 kb on - strand, within PGA1_262p01690 at 186.073 kb on - strand, within PGA1_262p01690 at 186.168 kb on - strand, within PGA1_262p01690 at 186.168 kb on - strand, within PGA1_262p01690 at 186.168 kb on - strand, within PGA1_262p01690 at 186.210 kb on - strand, within PGA1_262p01690 at 186.220 kb on - strand at 186.220 kb on - strand at 186.436 kb on - strand at 186.513 kb on - strand at 186.536 kb on - strand at 186.606 kb on - strand, within PGA1_262p01700 at 186.725 kb on - strand, within PGA1_262p01700 at 186.754 kb on + strand, within PGA1_262p01700 at 186.774 kb on - strand, within PGA1_262p01700 at 186.883 kb on - strand, within PGA1_262p01700 at 186.902 kb on + strand, within PGA1_262p01700 at 186.941 kb on + strand, within PGA1_262p01700 at 187.195 kb on - strand, within PGA1_262p01700 at 187.534 kb on - strand, within PGA1_262p01700 at 187.584 kb on + strand, within PGA1_262p01700 at 187.659 kb on - strand, within PGA1_262p01700 at 187.705 kb on + strand, within PGA1_262p01700 at 187.850 kb on - strand at 187.850 kb on - strand at 187.984 kb on + strand at 188.117 kb on + strand, within PGA1_262p01710 at 188.176 kb on + strand, within PGA1_262p01710 at 188.322 kb on + strand, within PGA1_262p01710 at 188.405 kb on + strand, within PGA1_262p01710 at 188.449 kb on + strand, within PGA1_262p01710 at 188.457 kb on - strand, within PGA1_262p01710 at 188.527 kb on + strand, within PGA1_262p01710 at 188.641 kb on + strand, within PGA1_262p01710 at 188.714 kb on - strand, within PGA1_262p01710 at 188.726 kb on + strand, within PGA1_262p01710 at 188.980 kb on + strand at 188.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 185,501 + PGA1_262p01690 0.54 -0.2 185,528 - PGA1_262p01690 0.55 +1.9 185,663 - PGA1_262p01690 0.62 -1.9 185,687 - PGA1_262p01690 0.63 -1.5 185,708 + PGA1_262p01690 0.64 -0.4 185,791 + PGA1_262p01690 0.68 -0.8 185,799 - PGA1_262p01690 0.69 -0.0 185,838 - PGA1_262p01690 0.71 +0.5 185,840 + PGA1_262p01690 0.71 -1.8 185,899 - PGA1_262p01690 0.74 -1.4 186,073 - PGA1_262p01690 0.83 +0.0 186,168 - PGA1_262p01690 0.87 -0.8 186,168 - PGA1_262p01690 0.87 -0.3 186,168 - PGA1_262p01690 0.87 -1.6 186,210 - PGA1_262p01690 0.90 -0.9 186,220 - +0.1 186,220 - +0.2 186,436 - -0.2 186,513 - +0.9 186,536 - +0.8 186,606 - PGA1_262p01700 0.11 +0.4 186,725 - PGA1_262p01700 0.18 +0.9 186,754 + PGA1_262p01700 0.20 +0.7 186,774 - PGA1_262p01700 0.22 +0.2 186,883 - PGA1_262p01700 0.29 -1.8 186,902 + PGA1_262p01700 0.30 +0.2 186,941 + PGA1_262p01700 0.32 -0.1 187,195 - PGA1_262p01700 0.49 -0.8 187,534 - PGA1_262p01700 0.71 +0.1 187,584 + PGA1_262p01700 0.74 +0.2 187,659 - PGA1_262p01700 0.79 -0.4 187,705 + PGA1_262p01700 0.82 -2.1 187,850 - +1.8 187,850 - -1.6 187,984 + -0.5 188,117 + PGA1_262p01710 0.12 +1.6 188,176 + PGA1_262p01710 0.18 -1.0 188,322 + PGA1_262p01710 0.34 +0.5 188,405 + PGA1_262p01710 0.43 -0.1 188,449 + PGA1_262p01710 0.47 -0.0 188,457 - PGA1_262p01710 0.48 -1.7 188,527 + PGA1_262p01710 0.56 +1.5 188,641 + PGA1_262p01710 0.68 +0.7 188,714 - PGA1_262p01710 0.76 +2.7 188,726 + PGA1_262p01710 0.77 -0.2 188,980 + +1.9 188,988 - -0.2
Or see this region's nucleotide sequence