Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00480 and PGA1_262p00490 are separated by 38 nucleotides PGA1_262p00490 and PGA1_262p00500 are separated by 77 nucleotides PGA1_262p00500 and PGA1_262p00510 overlap by 1 nucleotides
PGA1_262p00480: PGA1_262p00480 - putative addiction module antidote protein, CC2985 family, at 55,955 to 56,230
_262p00480
PGA1_262p00490: PGA1_262p00490 - hypothetical protein, at 56,269 to 56,991
_262p00490
PGA1_262p00500: PGA1_262p00500 - putative ATP dependent DNA ligase, at 57,069 to 58,625
_262p00500
PGA1_262p00510: PGA1_262p00510 - Predicted exonuclease of the beta-lactamase fold involved in RNA processing, at 58,625 to 59,638
_262p00510
Position (kb) 57
58
59 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 56.321 kb on - strand at 56.321 kb on - strand at 56.662 kb on + strand, within PGA1_262p00490 at 56.760 kb on + strand, within PGA1_262p00490 at 56.863 kb on + strand, within PGA1_262p00490 at 56.884 kb on + strand, within PGA1_262p00490 at 56.955 kb on + strand at 56.961 kb on + strand at 56.961 kb on + strand at 56.963 kb on - strand at 56.966 kb on + strand at 56.966 kb on + strand at 56.966 kb on + strand at 56.966 kb on + strand at 56.969 kb on - strand at 56.969 kb on - strand at 56.974 kb on - strand at 57.024 kb on + strand at 57.057 kb on + strand at 57.065 kb on - strand at 57.065 kb on - strand at 57.095 kb on + strand at 57.245 kb on - strand, within PGA1_262p00500 at 57.296 kb on - strand, within PGA1_262p00500 at 57.296 kb on - strand, within PGA1_262p00500 at 57.331 kb on + strand, within PGA1_262p00500 at 57.331 kb on + strand, within PGA1_262p00500 at 57.339 kb on - strand, within PGA1_262p00500 at 57.376 kb on - strand, within PGA1_262p00500 at 57.390 kb on - strand, within PGA1_262p00500 at 57.531 kb on + strand, within PGA1_262p00500 at 57.560 kb on + strand, within PGA1_262p00500 at 57.571 kb on + strand, within PGA1_262p00500 at 57.579 kb on - strand, within PGA1_262p00500 at 57.693 kb on - strand, within PGA1_262p00500 at 57.871 kb on + strand, within PGA1_262p00500 at 57.879 kb on - strand, within PGA1_262p00500 at 58.043 kb on - strand, within PGA1_262p00500 at 58.045 kb on + strand, within PGA1_262p00500 at 58.081 kb on - strand, within PGA1_262p00500 at 58.081 kb on - strand, within PGA1_262p00500 at 58.081 kb on - strand, within PGA1_262p00500 at 58.117 kb on + strand, within PGA1_262p00500 at 58.150 kb on - strand, within PGA1_262p00500 at 58.193 kb on + strand, within PGA1_262p00500 at 58.239 kb on - strand, within PGA1_262p00500 at 58.300 kb on + strand, within PGA1_262p00500 at 58.373 kb on - strand, within PGA1_262p00500 at 58.487 kb on + strand at 58.515 kb on + strand at 58.583 kb on + strand at 58.771 kb on - strand, within PGA1_262p00510 at 58.776 kb on - strand, within PGA1_262p00510 at 58.776 kb on - strand, within PGA1_262p00510 at 58.815 kb on - strand, within PGA1_262p00510 at 58.915 kb on - strand, within PGA1_262p00510 at 58.923 kb on + strand, within PGA1_262p00510 at 59.107 kb on - strand, within PGA1_262p00510 at 59.342 kb on + strand, within PGA1_262p00510 at 59.348 kb on - strand, within PGA1_262p00510 at 59.348 kb on - strand, within PGA1_262p00510 at 59.374 kb on + strand, within PGA1_262p00510 at 59.374 kb on + strand, within PGA1_262p00510 at 59.437 kb on - strand, within PGA1_262p00510 at 59.482 kb on - strand, within PGA1_262p00510 at 59.515 kb on + strand, within PGA1_262p00510 at 59.559 kb on + strand at 59.590 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 56,321 - -0.8 56,321 - -0.1 56,662 + PGA1_262p00490 0.54 -2.9 56,760 + PGA1_262p00490 0.68 -1.1 56,863 + PGA1_262p00490 0.82 -0.4 56,884 + PGA1_262p00490 0.85 -0.6 56,955 + +0.2 56,961 + -0.6 56,961 + +1.2 56,963 - -0.3 56,966 + -0.0 56,966 + +0.2 56,966 + +0.2 56,966 + +0.1 56,969 - -0.2 56,969 - -0.4 56,974 - +0.7 57,024 + +1.7 57,057 + -0.3 57,065 - -0.8 57,065 - +1.2 57,095 + +0.1 57,245 - PGA1_262p00500 0.11 +1.7 57,296 - PGA1_262p00500 0.15 -0.5 57,296 - PGA1_262p00500 0.15 +0.2 57,331 + PGA1_262p00500 0.17 -1.0 57,331 + PGA1_262p00500 0.17 +0.9 57,339 - PGA1_262p00500 0.17 -0.1 57,376 - PGA1_262p00500 0.20 +1.2 57,390 - PGA1_262p00500 0.21 -1.5 57,531 + PGA1_262p00500 0.30 +0.5 57,560 + PGA1_262p00500 0.32 -1.6 57,571 + PGA1_262p00500 0.32 +0.1 57,579 - PGA1_262p00500 0.33 -0.6 57,693 - PGA1_262p00500 0.40 -2.9 57,871 + PGA1_262p00500 0.52 -0.3 57,879 - PGA1_262p00500 0.52 +1.0 58,043 - PGA1_262p00500 0.63 +0.6 58,045 + PGA1_262p00500 0.63 -0.6 58,081 - PGA1_262p00500 0.65 -1.4 58,081 - PGA1_262p00500 0.65 -1.6 58,081 - PGA1_262p00500 0.65 -0.6 58,117 + PGA1_262p00500 0.67 -1.8 58,150 - PGA1_262p00500 0.69 -1.4 58,193 + PGA1_262p00500 0.72 -0.9 58,239 - PGA1_262p00500 0.75 +0.7 58,300 + PGA1_262p00500 0.79 -0.8 58,373 - PGA1_262p00500 0.84 +0.9 58,487 + +0.4 58,515 + +0.1 58,583 + -2.4 58,771 - PGA1_262p00510 0.14 -0.7 58,776 - PGA1_262p00510 0.15 -0.7 58,776 - PGA1_262p00510 0.15 -1.0 58,815 - PGA1_262p00510 0.19 -1.3 58,915 - PGA1_262p00510 0.29 -0.6 58,923 + PGA1_262p00510 0.29 -0.1 59,107 - PGA1_262p00510 0.48 -0.4 59,342 + PGA1_262p00510 0.71 -0.0 59,348 - PGA1_262p00510 0.71 -0.0 59,348 - PGA1_262p00510 0.71 -0.4 59,374 + PGA1_262p00510 0.74 -0.3 59,374 + PGA1_262p00510 0.74 -0.2 59,437 - PGA1_262p00510 0.80 -0.4 59,482 - PGA1_262p00510 0.85 +0.6 59,515 + PGA1_262p00510 0.88 +0.2 59,559 + +0.1 59,590 - +1.2
Or see this region's nucleotide sequence