Strain Fitness in Marinobacter adhaerens HP15 around HP15_3532

Experiment: m.b. Chloride 1000 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3530 and HP15_3531 are separated by 23 nucleotidesHP15_3531 and HP15_3532 are separated by 250 nucleotidesHP15_3532 and HP15_3533 are separated by 97 nucleotides HP15_3530: HP15_3530 - D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase, at 3,717,261 to 3,717,635 _3530 HP15_3531: HP15_3531 - hypothetical protein, at 3,717,659 to 3,718,096 _3531 HP15_3532: HP15_3532 - Metal-dependent phosphohydrolase, HD subdomain protein, at 3,718,347 to 3,719,519 _3532 HP15_3533: HP15_3533 - response regulator receiver (CheY-like) modulated diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 3,719,617 to 3,721,842 _3533 Position (kb) 3718 3719 3720Strain fitness (log2 ratio) -1 0 1 2 3at 3717.384 kb on - strand, within HP15_3530at 3717.386 kb on + strand, within HP15_3530at 3717.405 kb on + strand, within HP15_3530at 3717.406 kb on + strand, within HP15_3530at 3717.432 kb on + strand, within HP15_3530at 3717.487 kb on + strand, within HP15_3530at 3717.503 kb on - strand, within HP15_3530at 3717.505 kb on - strand, within HP15_3530at 3717.512 kb on - strand, within HP15_3530at 3717.518 kb on - strand, within HP15_3530at 3717.519 kb on + strand, within HP15_3530at 3717.519 kb on + strand, within HP15_3530at 3717.519 kb on + strand, within HP15_3530at 3717.519 kb on + strand, within HP15_3530at 3717.519 kb on + strand, within HP15_3530at 3717.527 kb on - strand, within HP15_3530at 3717.527 kb on - strand, within HP15_3530at 3717.527 kb on - strand, within HP15_3530at 3717.527 kb on - strand, within HP15_3530at 3717.563 kb on + strand, within HP15_3530at 3717.663 kb on - strandat 3717.866 kb on - strand, within HP15_3531at 3718.011 kb on + strand, within HP15_3531at 3718.098 kb on - strandat 3718.100 kb on - strandat 3718.105 kb on - strandat 3718.282 kb on + strandat 3718.282 kb on + strandat 3718.340 kb on - strandat 3718.361 kb on + strandat 3718.363 kb on + strandat 3718.366 kb on + strandat 3718.369 kb on - strandat 3718.433 kb on + strandat 3718.439 kb on + strandat 3718.473 kb on + strand, within HP15_3532at 3718.541 kb on - strand, within HP15_3532at 3718.570 kb on - strand, within HP15_3532at 3718.578 kb on + strand, within HP15_3532at 3718.598 kb on - strand, within HP15_3532at 3718.598 kb on - strand, within HP15_3532at 3718.677 kb on + strand, within HP15_3532at 3718.685 kb on - strand, within HP15_3532at 3718.741 kb on - strand, within HP15_3532at 3718.757 kb on + strand, within HP15_3532at 3718.797 kb on - strand, within HP15_3532at 3719.044 kb on + strand, within HP15_3532at 3719.052 kb on - strand, within HP15_3532at 3719.052 kb on - strand, within HP15_3532at 3719.069 kb on + strand, within HP15_3532at 3719.091 kb on - strand, within HP15_3532at 3719.140 kb on - strand, within HP15_3532at 3719.198 kb on + strand, within HP15_3532at 3719.214 kb on + strand, within HP15_3532at 3719.323 kb on + strand, within HP15_3532at 3719.464 kb on + strandat 3719.595 kb on + strandat 3719.595 kb on + strandat 3719.682 kb on + strandat 3719.695 kb on - strandat 3719.742 kb on + strandat 3719.745 kb on - strandat 3719.751 kb on + strandat 3719.811 kb on + strandat 3719.821 kb on + strandat 3719.829 kb on - strandat 3719.836 kb on + strandat 3719.844 kb on - strand, within HP15_3533at 3719.907 kb on - strand, within HP15_3533at 3719.930 kb on + strand, within HP15_3533at 3719.938 kb on - strand, within HP15_3533at 3719.966 kb on + strand, within HP15_3533at 3719.980 kb on - strand, within HP15_3533at 3720.039 kb on + strand, within HP15_3533at 3720.041 kb on - strand, within HP15_3533at 3720.072 kb on + strand, within HP15_3533at 3720.093 kb on + strand, within HP15_3533at 3720.148 kb on - strand, within HP15_3533at 3720.247 kb on - strand, within HP15_3533at 3720.247 kb on - strand, within HP15_3533at 3720.247 kb on - strand, within HP15_3533at 3720.297 kb on + strand, within HP15_3533at 3720.313 kb on - strand, within HP15_3533at 3720.342 kb on - strand, within HP15_3533at 3720.361 kb on + strand, within HP15_3533at 3720.361 kb on + strand, within HP15_3533at 3720.361 kb on + strand, within HP15_3533at 3720.369 kb on - strand, within HP15_3533at 3720.369 kb on - strand, within HP15_3533at 3720.369 kb on - strand, within HP15_3533at 3720.369 kb on - strand, within HP15_3533at 3720.511 kb on + strand, within HP15_3533

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chloride 1000 mM
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3,717,384 - HP15_3530 0.33 -0.7
3,717,386 + HP15_3530 0.33 -0.5
3,717,405 + HP15_3530 0.38 -1.3
3,717,406 + HP15_3530 0.39 -0.3
3,717,432 + HP15_3530 0.46 +1.3
3,717,487 + HP15_3530 0.60 +0.0
3,717,503 - HP15_3530 0.65 +0.1
3,717,505 - HP15_3530 0.65 -1.0
3,717,512 - HP15_3530 0.67 -0.5
3,717,518 - HP15_3530 0.69 +0.8
3,717,519 + HP15_3530 0.69 -0.3
3,717,519 + HP15_3530 0.69 -1.0
3,717,519 + HP15_3530 0.69 +0.8
3,717,519 + HP15_3530 0.69 -0.3
3,717,519 + HP15_3530 0.69 -0.3
3,717,527 - HP15_3530 0.71 -0.1
3,717,527 - HP15_3530 0.71 +0.6
3,717,527 - HP15_3530 0.71 -0.6
3,717,527 - HP15_3530 0.71 +0.2
3,717,563 + HP15_3530 0.81 +0.4
3,717,663 - +0.1
3,717,866 - HP15_3531 0.47 -0.3
3,718,011 + HP15_3531 0.80 -1.0
3,718,098 - +0.5
3,718,100 - -0.3
3,718,105 - +0.6
3,718,282 + +0.5
3,718,282 + +0.5
3,718,340 - +0.3
3,718,361 + +0.4
3,718,363 + -0.4
3,718,366 + +0.5
3,718,369 - +0.1
3,718,433 + -0.3
3,718,439 + +0.0
3,718,473 + HP15_3532 0.11 -0.1
3,718,541 - HP15_3532 0.17 +0.6
3,718,570 - HP15_3532 0.19 -0.3
3,718,578 + HP15_3532 0.20 -0.2
3,718,598 - HP15_3532 0.21 +0.4
3,718,598 - HP15_3532 0.21 -0.6
3,718,677 + HP15_3532 0.28 -0.4
3,718,685 - HP15_3532 0.29 +0.0
3,718,741 - HP15_3532 0.34 +0.2
3,718,757 + HP15_3532 0.35 +0.6
3,718,797 - HP15_3532 0.38 -0.5
3,719,044 + HP15_3532 0.59 +0.1
3,719,052 - HP15_3532 0.60 -0.5
3,719,052 - HP15_3532 0.60 +0.0
3,719,069 + HP15_3532 0.62 -0.0
3,719,091 - HP15_3532 0.63 +0.1
3,719,140 - HP15_3532 0.68 +0.3
3,719,198 + HP15_3532 0.73 +0.7
3,719,214 + HP15_3532 0.74 +1.3
3,719,323 + HP15_3532 0.83 -0.2
3,719,464 + -0.2
3,719,595 + -0.2
3,719,595 + +0.4
3,719,682 + -0.2
3,719,695 - +1.0
3,719,742 + +1.0
3,719,745 - +3.1
3,719,751 + +0.3
3,719,811 + -0.3
3,719,821 + +0.7
3,719,829 - +0.3
3,719,836 + -0.3
3,719,844 - HP15_3533 0.10 +0.1
3,719,907 - HP15_3533 0.13 -0.1
3,719,930 + HP15_3533 0.14 -0.3
3,719,938 - HP15_3533 0.14 -0.4
3,719,966 + HP15_3533 0.16 -0.8
3,719,980 - HP15_3533 0.16 -0.4
3,720,039 + HP15_3533 0.19 +0.3
3,720,041 - HP15_3533 0.19 +0.5
3,720,072 + HP15_3533 0.20 -0.8
3,720,093 + HP15_3533 0.21 +0.3
3,720,148 - HP15_3533 0.24 +0.3
3,720,247 - HP15_3533 0.28 +0.5
3,720,247 - HP15_3533 0.28 -1.1
3,720,247 - HP15_3533 0.28 -0.3
3,720,297 + HP15_3533 0.31 -0.4
3,720,313 - HP15_3533 0.31 +0.4
3,720,342 - HP15_3533 0.33 -1.3
3,720,361 + HP15_3533 0.33 +1.1
3,720,361 + HP15_3533 0.33 +0.1
3,720,361 + HP15_3533 0.33 +1.9
3,720,369 - HP15_3533 0.34 +1.5
3,720,369 - HP15_3533 0.34 +0.5
3,720,369 - HP15_3533 0.34 -0.3
3,720,369 - HP15_3533 0.34 -0.8
3,720,511 + HP15_3533 0.40 -0.3

Or see this region's nucleotide sequence