Experiment: m.b. Chloride 1000 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3234 and HP15_3235 are separated by 77 nucleotides HP15_3235 and HP15_3236 overlap by 6 nucleotides HP15_3236 and HP15_3237 overlap by 4 nucleotides HP15_3237 and HP15_3238 are separated by 13 nucleotides HP15_3238 and HP15_3239 are separated by 7 nucleotides
HP15_3234: HP15_3234 - isocitrate lyase, at 3,388,267 to 3,389,859
_3234
HP15_3235: HP15_3235 - hypothetical protein, at 3,389,937 to 3,390,176
_3235
HP15_3236: HP15_3236 - membrane protein containing DUF1538, at 3,390,171 to 3,391,631
_3236
HP15_3237: HP15_3237 - nitrogen regulatory protein P-II family protein-like protein, at 3,391,628 to 3,391,978
_3237
HP15_3238: HP15_3238 - protein containing cystathionine beta-synthase, core domain, at 3,391,992 to 3,392,381
_3238
HP15_3239: HP15_3239 - ion channel DMI1, at 3,392,389 to 3,394,335
_3239
Position (kb)
3390
3391
3392 Strain fitness (log2 ratio)
-1
0
1 at 3389.203 kb on - strand, within HP15_3234 at 3389.277 kb on + strand, within HP15_3234 at 3389.383 kb on - strand, within HP15_3234 at 3389.414 kb on + strand, within HP15_3234 at 3389.462 kb on + strand, within HP15_3234 at 3389.462 kb on + strand, within HP15_3234 at 3389.462 kb on + strand, within HP15_3234 at 3389.470 kb on - strand, within HP15_3234 at 3389.470 kb on - strand, within HP15_3234 at 3389.481 kb on + strand, within HP15_3234 at 3389.576 kb on - strand, within HP15_3234 at 3389.705 kb on + strand at 3389.734 kb on + strand at 3389.734 kb on + strand at 3389.734 kb on + strand at 3389.843 kb on - strand at 3389.843 kb on - strand at 3389.852 kb on - strand at 3389.916 kb on + strand at 3389.960 kb on + strand at 3389.971 kb on + strand, within HP15_3235 at 3390.086 kb on + strand, within HP15_3235 at 3390.109 kb on + strand, within HP15_3235 at 3390.115 kb on + strand, within HP15_3235 at 3390.166 kb on + strand at 3390.281 kb on - strand at 3390.316 kb on + strand at 3390.324 kb on - strand, within HP15_3236 at 3390.324 kb on - strand, within HP15_3236 at 3390.324 kb on - strand, within HP15_3236 at 3390.324 kb on - strand, within HP15_3236 at 3390.324 kb on - strand, within HP15_3236 at 3390.387 kb on + strand, within HP15_3236 at 3390.413 kb on + strand, within HP15_3236 at 3390.496 kb on - strand, within HP15_3236 at 3390.516 kb on - strand, within HP15_3236 at 3390.531 kb on + strand, within HP15_3236 at 3390.544 kb on + strand, within HP15_3236 at 3390.686 kb on + strand, within HP15_3236 at 3390.766 kb on + strand, within HP15_3236 at 3390.774 kb on - strand, within HP15_3236 at 3390.815 kb on + strand, within HP15_3236 at 3390.851 kb on - strand, within HP15_3236 at 3390.864 kb on + strand, within HP15_3236 at 3390.879 kb on - strand, within HP15_3236 at 3391.046 kb on + strand, within HP15_3236 at 3391.047 kb on + strand, within HP15_3236 at 3391.059 kb on + strand, within HP15_3236 at 3391.059 kb on + strand, within HP15_3236 at 3391.067 kb on - strand, within HP15_3236 at 3391.113 kb on - strand, within HP15_3236 at 3391.133 kb on + strand, within HP15_3236 at 3391.235 kb on + strand, within HP15_3236 at 3391.278 kb on - strand, within HP15_3236 at 3391.401 kb on + strand, within HP15_3236 at 3391.452 kb on - strand, within HP15_3236 at 3391.493 kb on - strand at 3391.506 kb on - strand at 3391.523 kb on - strand at 3391.556 kb on - strand at 3391.557 kb on - strand at 3391.670 kb on + strand, within HP15_3237 at 3391.774 kb on + strand, within HP15_3237 at 3391.881 kb on + strand, within HP15_3237 at 3391.894 kb on - strand, within HP15_3237 at 3391.923 kb on + strand, within HP15_3237 at 3391.941 kb on - strand, within HP15_3237 at 3391.967 kb on + strand at 3391.987 kb on - strand at 3392.076 kb on + strand, within HP15_3238 at 3392.076 kb on + strand, within HP15_3238 at 3392.076 kb on + strand, within HP15_3238 at 3392.369 kb on - strand at 3392.409 kb on - strand at 3392.411 kb on - strand at 3392.435 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chloride 1000 mM remove 3,389,203 - HP15_3234 0.59 +0.1 3,389,277 + HP15_3234 0.63 +1.0 3,389,383 - HP15_3234 0.70 +0.6 3,389,414 + HP15_3234 0.72 -0.3 3,389,462 + HP15_3234 0.75 -0.4 3,389,462 + HP15_3234 0.75 +0.4 3,389,462 + HP15_3234 0.75 -0.3 3,389,470 - HP15_3234 0.76 -1.0 3,389,470 - HP15_3234 0.76 +0.0 3,389,481 + HP15_3234 0.76 +1.2 3,389,576 - HP15_3234 0.82 -1.2 3,389,705 + +0.8 3,389,734 + +0.7 3,389,734 + +0.4 3,389,734 + -0.2 3,389,843 - +0.5 3,389,843 - +0.3 3,389,852 - +1.6 3,389,916 + +0.4 3,389,960 + -0.3 3,389,971 + HP15_3235 0.14 +0.1 3,390,086 + HP15_3235 0.62 -0.4 3,390,109 + HP15_3235 0.72 -0.1 3,390,115 + HP15_3235 0.74 +0.4 3,390,166 + +1.0 3,390,281 - +1.0 3,390,316 + +1.1 3,390,324 - HP15_3236 0.10 -0.3 3,390,324 - HP15_3236 0.10 -0.2 3,390,324 - HP15_3236 0.10 -0.3 3,390,324 - HP15_3236 0.10 +0.7 3,390,324 - HP15_3236 0.10 -0.3 3,390,387 + HP15_3236 0.15 -1.6 3,390,413 + HP15_3236 0.17 -0.5 3,390,496 - HP15_3236 0.22 -0.1 3,390,516 - HP15_3236 0.24 -0.5 3,390,531 + HP15_3236 0.25 -0.4 3,390,544 + HP15_3236 0.26 -0.5 3,390,686 + HP15_3236 0.35 -0.5 3,390,766 + HP15_3236 0.41 -0.5 3,390,774 - HP15_3236 0.41 -1.2 3,390,815 + HP15_3236 0.44 -0.8 3,390,851 - HP15_3236 0.47 +0.4 3,390,864 + HP15_3236 0.47 +0.1 3,390,879 - HP15_3236 0.48 +0.2 3,391,046 + HP15_3236 0.60 -1.6 3,391,047 + HP15_3236 0.60 +0.0 3,391,059 + HP15_3236 0.61 -0.1 3,391,059 + HP15_3236 0.61 +0.3 3,391,067 - HP15_3236 0.61 -0.9 3,391,113 - HP15_3236 0.64 +0.6 3,391,133 + HP15_3236 0.66 -0.9 3,391,235 + HP15_3236 0.73 -0.4 3,391,278 - HP15_3236 0.76 -0.7 3,391,401 + HP15_3236 0.84 -0.3 3,391,452 - HP15_3236 0.88 +0.3 3,391,493 - +0.5 3,391,506 - -0.5 3,391,523 - +0.4 3,391,556 - +0.4 3,391,557 - +0.3 3,391,670 + HP15_3237 0.12 +0.2 3,391,774 + HP15_3237 0.42 -0.2 3,391,881 + HP15_3237 0.72 +0.1 3,391,894 - HP15_3237 0.76 +0.5 3,391,923 + HP15_3237 0.84 -0.3 3,391,941 - HP15_3237 0.89 +0.4 3,391,967 + +0.0 3,391,987 - -0.2 3,392,076 + HP15_3238 0.22 -0.2 3,392,076 + HP15_3238 0.22 +0.1 3,392,076 + HP15_3238 0.22 +0.0 3,392,369 - -0.3 3,392,409 - +0.0 3,392,411 - -0.6 3,392,435 + -0.6
Or see this region's nucleotide sequence