Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c27520 and PGA1_c27530 overlap by 4 nucleotides PGA1_c27530 and PGA1_c27540 overlap by 1 nucleotides
PGA1_c27520: PGA1_c27520 - amine oxidoreductase-like protein, at 2,867,062 to 2,868,351
_c27520
PGA1_c27530: PGA1_c27530 - Uncharacterized conserved protein, at 2,868,348 to 2,869,100
_c27530
PGA1_c27540: PGA1_c27540 - putative cyclopropane-fatty-acyl-phospholipid synthase, at 2,869,100 to 2,870,257
_c27540
Position (kb)
2868
2869
2870 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2867.387 kb on + strand, within PGA1_c27520 at 2867.395 kb on - strand, within PGA1_c27520 at 2867.403 kb on + strand, within PGA1_c27520 at 2867.446 kb on + strand, within PGA1_c27520 at 2867.476 kb on + strand, within PGA1_c27520 at 2867.476 kb on + strand, within PGA1_c27520 at 2867.528 kb on - strand, within PGA1_c27520 at 2867.596 kb on - strand, within PGA1_c27520 at 2867.596 kb on - strand, within PGA1_c27520 at 2867.596 kb on - strand, within PGA1_c27520 at 2867.596 kb on - strand, within PGA1_c27520 at 2867.610 kb on - strand, within PGA1_c27520 at 2867.624 kb on + strand, within PGA1_c27520 at 2867.664 kb on - strand, within PGA1_c27520 at 2867.669 kb on - strand, within PGA1_c27520 at 2867.674 kb on + strand, within PGA1_c27520 at 2867.677 kb on - strand, within PGA1_c27520 at 2867.682 kb on - strand, within PGA1_c27520 at 2867.690 kb on - strand, within PGA1_c27520 at 2867.695 kb on + strand, within PGA1_c27520 at 2867.776 kb on + strand, within PGA1_c27520 at 2867.786 kb on + strand, within PGA1_c27520 at 2867.806 kb on + strand, within PGA1_c27520 at 2867.853 kb on + strand, within PGA1_c27520 at 2867.878 kb on - strand, within PGA1_c27520 at 2868.026 kb on - strand, within PGA1_c27520 at 2868.033 kb on - strand, within PGA1_c27520 at 2868.050 kb on + strand, within PGA1_c27520 at 2868.116 kb on + strand, within PGA1_c27520 at 2868.116 kb on + strand, within PGA1_c27520 at 2868.116 kb on + strand, within PGA1_c27520 at 2868.116 kb on + strand, within PGA1_c27520 at 2868.116 kb on + strand, within PGA1_c27520 at 2868.124 kb on - strand, within PGA1_c27520 at 2868.124 kb on - strand, within PGA1_c27520 at 2868.124 kb on - strand, within PGA1_c27520 at 2868.124 kb on - strand, within PGA1_c27520 at 2868.124 kb on - strand, within PGA1_c27520 at 2868.134 kb on - strand, within PGA1_c27520 at 2868.181 kb on + strand, within PGA1_c27520 at 2868.181 kb on + strand, within PGA1_c27520 at 2868.181 kb on + strand, within PGA1_c27520 at 2868.189 kb on - strand, within PGA1_c27520 at 2868.191 kb on + strand, within PGA1_c27520 at 2868.191 kb on + strand, within PGA1_c27520 at 2868.199 kb on - strand, within PGA1_c27520 at 2868.199 kb on - strand, within PGA1_c27520 at 2868.199 kb on - strand, within PGA1_c27520 at 2868.199 kb on - strand, within PGA1_c27520 at 2868.199 kb on - strand at 2868.199 kb on - strand, within PGA1_c27520 at 2868.199 kb on - strand, within PGA1_c27520 at 2868.199 kb on - strand, within PGA1_c27520 at 2868.237 kb on + strand at 2868.237 kb on + strand at 2868.299 kb on + strand at 2868.328 kb on - strand at 2868.335 kb on + strand at 2868.415 kb on + strand at 2868.426 kb on + strand, within PGA1_c27530 at 2868.471 kb on + strand, within PGA1_c27530 at 2868.549 kb on + strand, within PGA1_c27530 at 2868.554 kb on + strand, within PGA1_c27530 at 2868.557 kb on - strand, within PGA1_c27530 at 2868.557 kb on - strand, within PGA1_c27530 at 2868.559 kb on + strand, within PGA1_c27530 at 2868.562 kb on - strand, within PGA1_c27530 at 2868.562 kb on - strand, within PGA1_c27530 at 2868.564 kb on + strand, within PGA1_c27530 at 2868.564 kb on + strand, within PGA1_c27530 at 2868.567 kb on - strand, within PGA1_c27530 at 2868.569 kb on + strand, within PGA1_c27530 at 2868.572 kb on - strand, within PGA1_c27530 at 2868.585 kb on + strand, within PGA1_c27530 at 2868.593 kb on - strand, within PGA1_c27530 at 2868.593 kb on - strand, within PGA1_c27530 at 2868.687 kb on + strand, within PGA1_c27530 at 2868.690 kb on - strand, within PGA1_c27530 at 2868.710 kb on + strand, within PGA1_c27530 at 2868.737 kb on + strand, within PGA1_c27530 at 2868.777 kb on - strand, within PGA1_c27530 at 2868.788 kb on + strand, within PGA1_c27530 at 2868.820 kb on + strand, within PGA1_c27530 at 2868.922 kb on - strand, within PGA1_c27530 at 2868.990 kb on + strand, within PGA1_c27530 at 2868.993 kb on - strand, within PGA1_c27530 at 2869.006 kb on + strand, within PGA1_c27530 at 2869.006 kb on + strand, within PGA1_c27530 at 2869.072 kb on - strand at 2869.077 kb on - strand at 2869.086 kb on + strand at 2869.086 kb on + strand at 2869.167 kb on + strand at 2869.167 kb on + strand at 2869.177 kb on + strand at 2869.184 kb on + strand at 2869.184 kb on + strand at 2869.280 kb on + strand, within PGA1_c27540 at 2869.280 kb on + strand, within PGA1_c27540 at 2869.312 kb on + strand, within PGA1_c27540 at 2869.350 kb on - strand, within PGA1_c27540 at 2869.365 kb on - strand, within PGA1_c27540 at 2869.370 kb on - strand, within PGA1_c27540 at 2869.379 kb on + strand, within PGA1_c27540 at 2869.387 kb on - strand, within PGA1_c27540 at 2869.387 kb on - strand, within PGA1_c27540 at 2869.387 kb on - strand, within PGA1_c27540 at 2869.450 kb on + strand, within PGA1_c27540 at 2869.458 kb on - strand, within PGA1_c27540 at 2869.479 kb on - strand, within PGA1_c27540 at 2869.481 kb on + strand, within PGA1_c27540 at 2869.539 kb on + strand, within PGA1_c27540 at 2869.568 kb on + strand, within PGA1_c27540 at 2869.576 kb on - strand, within PGA1_c27540 at 2869.576 kb on - strand, within PGA1_c27540 at 2869.576 kb on - strand, within PGA1_c27540 at 2869.576 kb on - strand, within PGA1_c27540 at 2869.611 kb on - strand, within PGA1_c27540 at 2869.643 kb on - strand, within PGA1_c27540 at 2869.679 kb on + strand, within PGA1_c27540 at 2869.687 kb on - strand, within PGA1_c27540 at 2869.690 kb on - strand, within PGA1_c27540 at 2869.690 kb on - strand, within PGA1_c27540 at 2869.703 kb on + strand, within PGA1_c27540 at 2869.716 kb on + strand, within PGA1_c27540 at 2869.716 kb on + strand, within PGA1_c27540 at 2869.734 kb on - strand, within PGA1_c27540 at 2869.849 kb on + strand, within PGA1_c27540 at 2869.857 kb on - strand, within PGA1_c27540 at 2869.857 kb on - strand, within PGA1_c27540 at 2869.857 kb on - strand, within PGA1_c27540 at 2869.857 kb on - strand, within PGA1_c27540 at 2869.857 kb on - strand, within PGA1_c27540 at 2869.925 kb on + strand, within PGA1_c27540 at 2869.925 kb on + strand, within PGA1_c27540 at 2869.933 kb on - strand, within PGA1_c27540 at 2869.981 kb on + strand, within PGA1_c27540 at 2870.000 kb on + strand, within PGA1_c27540 at 2870.037 kb on - strand, within PGA1_c27540 at 2870.060 kb on + strand, within PGA1_c27540 at 2870.072 kb on + strand, within PGA1_c27540 at 2870.085 kb on - strand, within PGA1_c27540 at 2870.086 kb on - strand, within PGA1_c27540
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 2,867,387 + PGA1_c27520 0.25 +0.4 2,867,395 - PGA1_c27520 0.26 +0.8 2,867,403 + PGA1_c27520 0.26 -0.4 2,867,446 + PGA1_c27520 0.30 +0.5 2,867,476 + PGA1_c27520 0.32 +0.2 2,867,476 + PGA1_c27520 0.32 +1.4 2,867,528 - PGA1_c27520 0.36 +0.1 2,867,596 - PGA1_c27520 0.41 -2.0 2,867,596 - PGA1_c27520 0.41 -0.9 2,867,596 - PGA1_c27520 0.41 +0.3 2,867,596 - PGA1_c27520 0.41 +0.3 2,867,610 - PGA1_c27520 0.42 -1.8 2,867,624 + PGA1_c27520 0.44 -2.0 2,867,664 - PGA1_c27520 0.47 +0.0 2,867,669 - PGA1_c27520 0.47 -0.7 2,867,674 + PGA1_c27520 0.47 +0.4 2,867,677 - PGA1_c27520 0.48 +0.0 2,867,682 - PGA1_c27520 0.48 +0.3 2,867,690 - PGA1_c27520 0.49 -0.1 2,867,695 + PGA1_c27520 0.49 +0.1 2,867,776 + PGA1_c27520 0.55 +0.5 2,867,786 + PGA1_c27520 0.56 -1.9 2,867,806 + PGA1_c27520 0.58 -0.5 2,867,853 + PGA1_c27520 0.61 -0.2 2,867,878 - PGA1_c27520 0.63 +1.4 2,868,026 - PGA1_c27520 0.75 +0.4 2,868,033 - PGA1_c27520 0.75 -0.6 2,868,050 + PGA1_c27520 0.77 -0.2 2,868,116 + PGA1_c27520 0.82 +1.0 2,868,116 + PGA1_c27520 0.82 +1.8 2,868,116 + PGA1_c27520 0.82 -1.0 2,868,116 + PGA1_c27520 0.82 -0.6 2,868,116 + PGA1_c27520 0.82 -0.0 2,868,124 - PGA1_c27520 0.82 -0.4 2,868,124 - PGA1_c27520 0.82 +0.0 2,868,124 - PGA1_c27520 0.82 +0.5 2,868,124 - PGA1_c27520 0.82 +0.0 2,868,124 - PGA1_c27520 0.82 +0.2 2,868,134 - PGA1_c27520 0.83 -3.5 2,868,181 + PGA1_c27520 0.87 -1.0 2,868,181 + PGA1_c27520 0.87 -1.2 2,868,181 + PGA1_c27520 0.87 -0.4 2,868,189 - PGA1_c27520 0.87 -0.4 2,868,191 + PGA1_c27520 0.88 -1.5 2,868,191 + PGA1_c27520 0.88 -0.8 2,868,199 - PGA1_c27520 0.88 -1.3 2,868,199 - PGA1_c27520 0.88 +0.3 2,868,199 - PGA1_c27520 0.88 +0.6 2,868,199 - PGA1_c27520 0.88 -1.2 2,868,199 - +0.8 2,868,199 - PGA1_c27520 0.88 -0.2 2,868,199 - PGA1_c27520 0.88 +0.3 2,868,199 - PGA1_c27520 0.88 +0.8 2,868,237 + +0.4 2,868,237 + -0.7 2,868,299 + +0.2 2,868,328 - -0.7 2,868,335 + +0.4 2,868,415 + -0.7 2,868,426 + PGA1_c27530 0.10 +0.5 2,868,471 + PGA1_c27530 0.16 -0.4 2,868,549 + PGA1_c27530 0.27 +0.1 2,868,554 + PGA1_c27530 0.27 -1.2 2,868,557 - PGA1_c27530 0.28 +0.1 2,868,557 - PGA1_c27530 0.28 +0.6 2,868,559 + PGA1_c27530 0.28 +0.6 2,868,562 - PGA1_c27530 0.28 -0.9 2,868,562 - PGA1_c27530 0.28 -1.3 2,868,564 + PGA1_c27530 0.29 -0.5 2,868,564 + PGA1_c27530 0.29 +0.4 2,868,567 - PGA1_c27530 0.29 -1.5 2,868,569 + PGA1_c27530 0.29 -0.6 2,868,572 - PGA1_c27530 0.30 -0.6 2,868,585 + PGA1_c27530 0.31 -0.4 2,868,593 - PGA1_c27530 0.33 -0.5 2,868,593 - PGA1_c27530 0.33 +1.0 2,868,687 + PGA1_c27530 0.45 -0.1 2,868,690 - PGA1_c27530 0.45 -1.4 2,868,710 + PGA1_c27530 0.48 -0.1 2,868,737 + PGA1_c27530 0.52 -0.2 2,868,777 - PGA1_c27530 0.57 -0.8 2,868,788 + PGA1_c27530 0.58 -0.2 2,868,820 + PGA1_c27530 0.63 -1.5 2,868,922 - PGA1_c27530 0.76 -3.2 2,868,990 + PGA1_c27530 0.85 -0.9 2,868,993 - PGA1_c27530 0.86 -0.0 2,869,006 + PGA1_c27530 0.87 -0.9 2,869,006 + PGA1_c27530 0.87 +0.1 2,869,072 - +0.2 2,869,077 - -1.4 2,869,086 + -0.2 2,869,086 + -0.8 2,869,167 + -2.4 2,869,167 + -1.4 2,869,177 + -0.1 2,869,184 + +1.8 2,869,184 + +1.2 2,869,280 + PGA1_c27540 0.16 -0.4 2,869,280 + PGA1_c27540 0.16 -1.5 2,869,312 + PGA1_c27540 0.18 +0.9 2,869,350 - PGA1_c27540 0.22 +0.4 2,869,365 - PGA1_c27540 0.23 -0.6 2,869,370 - PGA1_c27540 0.23 -1.5 2,869,379 + PGA1_c27540 0.24 +0.3 2,869,387 - PGA1_c27540 0.25 -0.2 2,869,387 - PGA1_c27540 0.25 +0.6 2,869,387 - PGA1_c27540 0.25 -2.5 2,869,450 + PGA1_c27540 0.30 +0.9 2,869,458 - PGA1_c27540 0.31 +0.2 2,869,479 - PGA1_c27540 0.33 -2.2 2,869,481 + PGA1_c27540 0.33 -0.3 2,869,539 + PGA1_c27540 0.38 -0.6 2,869,568 + PGA1_c27540 0.40 -0.7 2,869,576 - PGA1_c27540 0.41 +0.3 2,869,576 - PGA1_c27540 0.41 +0.3 2,869,576 - PGA1_c27540 0.41 -1.8 2,869,576 - PGA1_c27540 0.41 -0.4 2,869,611 - PGA1_c27540 0.44 -1.1 2,869,643 - PGA1_c27540 0.47 +0.2 2,869,679 + PGA1_c27540 0.50 -1.1 2,869,687 - PGA1_c27540 0.51 +0.0 2,869,690 - PGA1_c27540 0.51 -0.2 2,869,690 - PGA1_c27540 0.51 -0.6 2,869,703 + PGA1_c27540 0.52 +0.6 2,869,716 + PGA1_c27540 0.53 -0.6 2,869,716 + PGA1_c27540 0.53 -1.1 2,869,734 - PGA1_c27540 0.55 -1.7 2,869,849 + PGA1_c27540 0.65 -0.4 2,869,857 - PGA1_c27540 0.65 -1.0 2,869,857 - PGA1_c27540 0.65 -1.3 2,869,857 - PGA1_c27540 0.65 +0.6 2,869,857 - PGA1_c27540 0.65 +0.4 2,869,857 - PGA1_c27540 0.65 -2.2 2,869,925 + PGA1_c27540 0.71 -2.1 2,869,925 + PGA1_c27540 0.71 +1.2 2,869,933 - PGA1_c27540 0.72 +0.5 2,869,981 + PGA1_c27540 0.76 -0.8 2,870,000 + PGA1_c27540 0.78 +1.1 2,870,037 - PGA1_c27540 0.81 +0.0 2,870,060 + PGA1_c27540 0.83 -1.6 2,870,072 + PGA1_c27540 0.84 +1.3 2,870,085 - PGA1_c27540 0.85 -0.8 2,870,086 - PGA1_c27540 0.85 +0.7
Or see this region's nucleotide sequence