Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23560

Experiment: m.b. Ceftazidime 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c23550 and PGA1_c23560 are separated by 123 nucleotidesPGA1_c23560 and PGA1_c23570 are separated by 96 nucleotides PGA1_c23550: PGA1_c23550 - putative intracellular septation protein, at 2,456,063 to 2,456,677 _c23550 PGA1_c23560: PGA1_c23560 - Membrane transporters of cations and cationic drugs, at 2,456,801 to 2,457,703 _c23560 PGA1_c23570: PGA1_c23570 - putative cell division protein, at 2,457,800 to 2,459,047 _c23570 Position (kb) 2456 2457 2458Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2455.839 kb on - strandat 2455.839 kb on - strandat 2455.841 kb on - strandat 2455.862 kb on - strandat 2456.757 kb on - strandat 2456.773 kb on + strandat 2456.784 kb on + strandat 2456.870 kb on + strandat 2456.922 kb on - strand, within PGA1_c23560at 2456.954 kb on + strand, within PGA1_c23560at 2456.999 kb on + strand, within PGA1_c23560at 2457.014 kb on - strand, within PGA1_c23560at 2457.163 kb on - strand, within PGA1_c23560at 2457.304 kb on + strand, within PGA1_c23560at 2457.343 kb on + strand, within PGA1_c23560at 2457.351 kb on - strand, within PGA1_c23560at 2457.368 kb on - strand, within PGA1_c23560at 2457.381 kb on - strand, within PGA1_c23560at 2457.388 kb on + strand, within PGA1_c23560at 2457.388 kb on + strand, within PGA1_c23560at 2457.388 kb on + strand, within PGA1_c23560at 2457.388 kb on + strand, within PGA1_c23560at 2457.393 kb on + strand, within PGA1_c23560at 2457.401 kb on - strand, within PGA1_c23560at 2457.406 kb on - strand, within PGA1_c23560at 2457.411 kb on - strand, within PGA1_c23560at 2457.411 kb on - strand, within PGA1_c23560at 2457.420 kb on + strand, within PGA1_c23560at 2457.420 kb on + strand, within PGA1_c23560at 2457.423 kb on - strand, within PGA1_c23560at 2457.514 kb on - strand, within PGA1_c23560at 2457.528 kb on - strand, within PGA1_c23560at 2457.528 kb on - strand, within PGA1_c23560at 2457.543 kb on - strand, within PGA1_c23560at 2457.543 kb on - strand, within PGA1_c23560at 2457.582 kb on - strand, within PGA1_c23560at 2457.603 kb on + strand, within PGA1_c23560at 2457.712 kb on + strandat 2457.792 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml
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2,455,839 - +0.5
2,455,839 - +0.3
2,455,841 - -0.6
2,455,862 - -1.8
2,456,757 - +0.5
2,456,773 + -1.6
2,456,784 + -0.2
2,456,870 + -0.8
2,456,922 - PGA1_c23560 0.13 -0.2
2,456,954 + PGA1_c23560 0.17 +0.4
2,456,999 + PGA1_c23560 0.22 +1.0
2,457,014 - PGA1_c23560 0.24 -0.1
2,457,163 - PGA1_c23560 0.40 -1.2
2,457,304 + PGA1_c23560 0.56 +1.8
2,457,343 + PGA1_c23560 0.60 +0.4
2,457,351 - PGA1_c23560 0.61 -1.1
2,457,368 - PGA1_c23560 0.63 +1.0
2,457,381 - PGA1_c23560 0.64 +1.4
2,457,388 + PGA1_c23560 0.65 +0.3
2,457,388 + PGA1_c23560 0.65 +0.3
2,457,388 + PGA1_c23560 0.65 +0.2
2,457,388 + PGA1_c23560 0.65 +0.1
2,457,393 + PGA1_c23560 0.66 +0.8
2,457,401 - PGA1_c23560 0.66 +2.2
2,457,406 - PGA1_c23560 0.67 -0.8
2,457,411 - PGA1_c23560 0.68 +0.3
2,457,411 - PGA1_c23560 0.68 +0.3
2,457,420 + PGA1_c23560 0.69 -1.2
2,457,420 + PGA1_c23560 0.69 +1.6
2,457,423 - PGA1_c23560 0.69 +1.2
2,457,514 - PGA1_c23560 0.79 -1.2
2,457,528 - PGA1_c23560 0.81 +0.8
2,457,528 - PGA1_c23560 0.81 +1.9
2,457,543 - PGA1_c23560 0.82 -0.2
2,457,543 - PGA1_c23560 0.82 -1.8
2,457,582 - PGA1_c23560 0.86 +3.1
2,457,603 + PGA1_c23560 0.89 -1.4
2,457,712 + +2.1
2,457,792 - +1.8

Or see this region's nucleotide sequence