Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c22950

Experiment: m.b. Ceftazidime 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Ceftazidime 0.001 mg/ml
2,376,177	+		PGA1_c22940	0.59	-1.0
2,376,189	+		PGA1_c22940	0.60	+2.3
2,376,199	-		PGA1_c22940	0.61	+1.3
2,376,241	+		PGA1_c22940	0.65	+0.3
2,376,243	-		PGA1_c22940	0.65	+2.1
2,376,304	+		PGA1_c22940	0.71	-0.4
2,376,447	-		PGA1_c22940	0.86	-0.8
2,376,449	+		PGA1_c22940	0.86	-0.7
2,376,466	-		PGA1_c22940	0.88	+0.9
2,376,477	+		PGA1_c22940	0.89	+0.4
2,376,477	+		PGA1_c22940	0.89	+0.7
2,376,541	-				+0.4
2,376,550	+				+0.5
2,376,558	-				+0.4
2,376,558	-				-1.4
2,376,558	-				-0.3
2,376,616	+				-1.1
2,376,630	+				+0.1
2,376,638	-				-0.5
2,376,671	+				+1.3
2,376,673	-				-0.3
2,376,681	+				-1.0
2,376,681	+				-1.2
2,376,681	+				-0.8
2,376,681	+				+1.6
2,376,681	+				+1.5
2,376,688	+				-0.5
2,376,688	+				+0.6
2,376,689	-				-1.2
2,376,689	-				+0.0
2,376,689	-				+1.4
2,376,689	-				-0.4
2,376,689	-				+1.4
2,376,689	-				+0.0
2,376,689	-				+1.0
2,376,689	-				-1.6
2,376,696	-				-1.1
2,376,702	+				+0.2
2,376,707	+				+0.3
2,376,707	+				-1.4
2,376,713	+				-0.1
2,376,713	+				+1.3
2,376,713	+				+0.5
2,376,715	-				-1.6
2,376,723	+				+1.1
2,376,723	+				-0.3
2,376,726	+				+0.4
2,376,731	-				+0.4
2,376,748	-				-0.8
2,376,761	+				-0.7
2,376,761	+				-0.7
2,376,840	-				+0.2
2,376,863	-				+1.3
2,376,865	+				+0.4
2,376,865	+				-0.3
2,376,865	+				+0.0
2,376,865	+				+1.3
2,376,865	+				-0.7
2,376,865	+				-2.1
2,376,865	+				+0.8
2,376,865	+				+0.0
2,376,873	-				+1.2
2,376,873	-				-0.3
2,376,873	-				+0.5
2,376,875	+				+0.9
2,376,879	-				-0.8
2,376,887	+				-1.0
2,376,895	-				+0.1
2,376,897	+				-0.8
2,376,902	+				+0.6
2,376,910	-				-0.0
2,376,910	-				+1.3
2,376,927	-				-1.1
2,376,974	-				-1.9
2,377,010	+				-2.1
2,377,010	+				-0.3
2,377,010	+				+1.1
2,377,011	-				+0.1
2,377,013	+				-0.3
2,377,018	+				-0.8
2,377,018	-				-0.1
2,377,018	-				-0.7
2,377,024	+				-0.1
2,377,031	-				-0.7
2,377,032	-				+1.0
2,377,112	+				-0.6
2,377,112	+				+0.5
2,377,120	-				+0.5
2,377,164	-				-0.5
2,377,179	+				-1.4
2,377,226	-				+0.4
2,377,264	-				+1.5
2,377,276	-				-0.8
2,377,300	+				-1.0
2,377,334	-				-2.7
2,377,433	-		PGA1_c22950	0.15	-1.8
2,377,450	+		PGA1_c22950	0.16	-2.8
2,377,460	+		PGA1_c22950	0.17	-0.3
2,377,500	-		PGA1_c22950	0.19	-0.0
2,377,537	-		PGA1_c22950	0.21	+0.7
2,377,546	-		PGA1_c22950	0.22	+2.1
2,377,623	-		PGA1_c22950	0.26	+1.0
2,377,623	-		PGA1_c22950	0.26	+0.5
2,377,625	+		PGA1_c22950	0.26	-0.8
2,377,625	+		PGA1_c22950	0.26	-1.2
2,377,625	+		PGA1_c22950	0.26	-0.3
2,377,636	+		PGA1_c22950	0.27	+0.2
2,377,655	-		PGA1_c22950	0.28	+1.0
2,377,656	-		PGA1_c22950	0.28	-0.7
2,377,695	+		PGA1_c22950	0.30	+0.4
2,377,714	+		PGA1_c22950	0.31	+0.4
2,377,743	+		PGA1_c22950	0.33	-0.3
2,377,751	-		PGA1_c22950	0.34	-2.7
2,377,782	+		PGA1_c22950	0.35	+0.0
2,377,790	-		PGA1_c22950	0.36	+0.6
2,377,801	+		PGA1_c22950	0.36	-1.6
2,377,828	+		PGA1_c22950	0.38	-1.3
2,377,828	+		PGA1_c22950	0.38	+1.6
2,377,838	+		PGA1_c22950	0.38	-1.8
2,377,838	+		PGA1_c22950	0.38	+0.5
2,377,838	+		PGA1_c22950	0.38	-1.6
2,377,846	-		PGA1_c22950	0.39	+0.3
2,377,889	-		PGA1_c22950	0.41	+1.0
2,377,931	+		PGA1_c22950	0.44	-0.2
2,377,963	+		PGA1_c22950	0.46	+0.1
2,377,971	-		PGA1_c22950	0.46	+0.5
2,377,971	-		PGA1_c22950	0.46	+0.9
2,378,023	+		PGA1_c22950	0.49	-1.6
2,378,063	+		PGA1_c22950	0.51	-0.4
2,378,063	+		PGA1_c22950	0.51	+0.8
2,378,071	-		PGA1_c22950	0.52	+0.7
2,378,071	-		PGA1_c22950	0.52	+1.6
2,378,090	+		PGA1_c22950	0.53	+0.7
2,378,121	+		PGA1_c22950	0.54	+0.7
2,378,129	-		PGA1_c22950	0.55	-0.3
2,378,207	+		PGA1_c22950	0.59	-0.3
2,378,215	-		PGA1_c22950	0.60	+0.6
2,378,245	+		PGA1_c22950	0.62	-0.7
2,378,276	+		PGA1_c22950	0.63	+1.5
2,378,322	+		PGA1_c22950	0.66	+0.3
2,378,402	+		PGA1_c22950	0.70	+0.2
2,378,402	+		PGA1_c22950	0.70	+0.5
2,378,402	+		PGA1_c22950	0.70	+0.1
2,378,402	+		PGA1_c22950	0.70	+0.0
2,378,402	+		PGA1_c22950	0.70	+1.0
2,378,402	+		PGA1_c22950	0.70	+0.0
2,378,402	+		PGA1_c22950	0.70	-0.3
2,378,402	+		PGA1_c22950	0.70	-0.8
2,378,402	+		PGA1_c22950	0.70	+0.4
2,378,402	+		PGA1_c22950	0.70	+0.1
2,378,402	+		PGA1_c22950	0.70	+1.0
2,378,402	+		PGA1_c22950	0.70	+1.2
2,378,402	+		PGA1_c22950	0.70	+0.6
2,378,402	+		PGA1_c22950	0.70	-0.6
2,378,410	-		PGA1_c22950	0.71	+1.1
2,378,410	-		PGA1_c22950	0.71	+1.0
2,378,410	-		PGA1_c22950	0.71	-0.4
2,378,410	-		PGA1_c22950	0.71	-0.3
2,378,410	-		PGA1_c22950	0.71	-1.7
2,378,410	-		PGA1_c22950	0.71	+0.7
2,378,410	-		PGA1_c22950	0.71	-0.3
2,378,410	-		PGA1_c22950	0.71	+0.2
2,378,410	-		PGA1_c22950	0.71	+0.7
2,378,410	-		PGA1_c22950	0.71	+0.5
2,378,410	-		PGA1_c22950	0.71	-0.1
2,378,410	-		PGA1_c22950	0.71	+0.0
2,378,410	-		PGA1_c22950	0.71	-1.4
2,378,410	-		PGA1_c22950	0.71	+0.5
2,378,410	-		PGA1_c22950	0.71	+0.9
2,378,410	-		PGA1_c22950	0.71	+1.4
2,378,410	-		PGA1_c22950	0.71	+1.9
2,378,410	-		PGA1_c22950	0.71	-0.3
2,378,410	-		PGA1_c22950	0.71	+1.4
2,378,410	-		PGA1_c22950	0.71	+0.0
2,378,410	-		PGA1_c22950	0.71	-0.3
2,378,410	-		PGA1_c22950	0.71	+0.2
2,378,417	-		PGA1_c22950	0.71	-0.8
2,378,432	+		PGA1_c22950	0.72	+0.3
2,378,432	+		PGA1_c22950	0.72	-0.4
2,378,437	+		PGA1_c22950	0.72	-0.5
2,378,442	+		PGA1_c22950	0.73	-1.2
2,378,445	-		PGA1_c22950	0.73	+1.2
2,378,445	-		PGA1_c22950	0.73	-1.6
2,378,445	-		PGA1_c22950	0.73	-1.5
2,378,450	-		PGA1_c22950	0.73	-0.7
2,378,450	-		PGA1_c22950	0.73	+1.7
2,378,459	+		PGA1_c22950	0.74	+1.0
2,378,481	+		PGA1_c22950	0.75	-1.6
2,378,481	+		PGA1_c22950	0.75	-0.6
2,378,481	+		PGA1_c22950	0.75	-3.1
2,378,489	-		PGA1_c22950	0.75	-0.4
2,378,489	-		PGA1_c22950	0.75	+0.1
2,378,517	+		PGA1_c22950	0.77	+1.4
2,378,566	-		PGA1_c22950	0.80	+1.8
2,378,578	-		PGA1_c22950	0.80	+1.0
2,378,618	+		PGA1_c22950	0.83	+0.0
2,378,633	+		PGA1_c22950	0.84	-0.5
2,378,640	+		PGA1_c22950	0.84	+0.7
2,378,641	-		PGA1_c22950	0.84	+1.7
2,378,647	+		PGA1_c22950	0.84	-0.8
2,378,652	+		PGA1_c22950	0.85	-1.3
2,378,652	+		PGA1_c22950	0.85	+1.1
2,378,660	-		PGA1_c22950	0.85	-1.8
2,378,737	-		PGA1_c22950	0.89	+0.7
2,378,792	+				-1.2
2,378,812	+				-0.4
2,378,863	+				+0.1
2,378,863	+				-0.1
2,378,863	+				-1.8
2,378,929	-				+1.0
2,378,934	+				-0.9
2,378,981	-				+0.7
2,379,043	+				+0.6
2,379,044	+				-0.1
2,379,051	-				+0.4
2,379,052	-				+1.1
2,379,057	+				-1.4
2,379,065	-				-0.5
2,379,070	-				-1.1
2,379,088	+		PGA1_c22960	0.10	-0.6
2,379,099	+		PGA1_c22960	0.11	+0.8
2,379,103	+		PGA1_c22960	0.11	+0.1
2,379,111	-		PGA1_c22960	0.12	-0.1
2,379,255	+		PGA1_c22960	0.24	-0.8
2,379,260	+		PGA1_c22960	0.24	-1.3
2,379,263	-		PGA1_c22960	0.24	+1.3
2,379,263	-		PGA1_c22960	0.24	+0.6
2,379,268	-		PGA1_c22960	0.25	+1.0
2,379,268	-		PGA1_c22960	0.25	+0.0
2,379,268	-		PGA1_c22960	0.25	-0.1
2,379,438	+		PGA1_c22960	0.38	-0.1
2,379,466	+		PGA1_c22960	0.41	-1.3
2,379,467	-		PGA1_c22960	0.41	+0.3
2,379,474	-		PGA1_c22960	0.41	-1.1
2,379,494	-		PGA1_c22960	0.43	-0.3
2,379,494	-		PGA1_c22960	0.43	+1.3
2,379,494	-		PGA1_c22960	0.43	+1.7
2,379,494	-		PGA1_c22960	0.43	-1.4
2,379,565	+		PGA1_c22960	0.49	-0.4
2,379,592	-		PGA1_c22960	0.51	+0.2
2,379,639	+		PGA1_c22960	0.55	+1.6
2,379,650	-		PGA1_c22960	0.55	+1.3
2,379,654	-		PGA1_c22960	0.56	-0.3
2,379,756	+		PGA1_c22960	0.64	+0.7
2,379,764	-		PGA1_c22960	0.65	+0.3
2,379,764	-		PGA1_c22960	0.65	-1.3
2,379,764	-		PGA1_c22960	0.65	+0.2
2,379,764	-		PGA1_c22960	0.65	-1.3
2,379,769	+		PGA1_c22960	0.65	+0.1
2,379,820	-		PGA1_c22960	0.69	+0.3
2,379,823	-		PGA1_c22960	0.69	+1.3
2,379,838	-		PGA1_c22960	0.71	-0.4
2,379,861	-		PGA1_c22960	0.72	-0.1
2,379,861	-		PGA1_c22960	0.72	-0.8
2,379,871	-		PGA1_c22960	0.73	-0.8
2,379,891	+		PGA1_c22960	0.75	+0.6
2,379,891	+		PGA1_c22960	0.75	-0.4