Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02170 and PGA1_c02180 are separated by 2 nucleotides PGA1_c02180 and PGA1_c02190 are separated by 16 nucleotides
PGA1_c02170: PGA1_c02170 - Uncharacterized conserved protein, at 197,533 to 198,336
_c02170
PGA1_c02180: PGA1_c02180 - dihydrolipoyl dehydrogenase LpdA, at 198,339 to 199,760
_c02180
PGA1_c02190: PGA1_c02190 - signal transduction histidine kinase, at 199,777 to 201,165
_c02190
Position (kb) 198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 197.368 kb on + strand at 197.370 kb on - strand at 197.376 kb on - strand at 197.412 kb on - strand at 197.470 kb on - strand at 197.486 kb on + strand at 197.486 kb on + strand at 197.486 kb on + strand at 197.501 kb on + strand at 197.507 kb on + strand at 197.509 kb on - strand at 197.515 kb on - strand at 197.621 kb on + strand, within PGA1_c02170 at 197.621 kb on + strand, within PGA1_c02170 at 197.629 kb on - strand, within PGA1_c02170 at 197.629 kb on - strand, within PGA1_c02170 at 197.629 kb on - strand, within PGA1_c02170 at 197.681 kb on + strand, within PGA1_c02170 at 197.687 kb on + strand, within PGA1_c02170 at 197.771 kb on + strand, within PGA1_c02170 at 197.785 kb on + strand, within PGA1_c02170 at 197.785 kb on + strand, within PGA1_c02170 at 197.790 kb on + strand, within PGA1_c02170 at 197.790 kb on + strand, within PGA1_c02170 at 197.790 kb on + strand, within PGA1_c02170 at 197.790 kb on + strand, within PGA1_c02170 at 197.790 kb on + strand, within PGA1_c02170 at 197.792 kb on + strand, within PGA1_c02170 at 197.793 kb on - strand, within PGA1_c02170 at 197.867 kb on - strand, within PGA1_c02170 at 197.867 kb on - strand, within PGA1_c02170 at 197.942 kb on + strand, within PGA1_c02170 at 198.056 kb on - strand, within PGA1_c02170 at 198.096 kb on + strand, within PGA1_c02170 at 198.096 kb on + strand, within PGA1_c02170 at 198.104 kb on - strand, within PGA1_c02170 at 198.109 kb on - strand, within PGA1_c02170 at 198.109 kb on - strand, within PGA1_c02170 at 198.128 kb on - strand, within PGA1_c02170 at 198.168 kb on - strand, within PGA1_c02170 at 198.193 kb on + strand, within PGA1_c02170 at 198.201 kb on - strand, within PGA1_c02170 at 198.204 kb on + strand, within PGA1_c02170 at 198.220 kb on - strand, within PGA1_c02170 at 198.437 kb on + strand at 198.444 kb on + strand at 198.445 kb on - strand at 198.447 kb on + strand at 198.520 kb on + strand, within PGA1_c02180 at 198.525 kb on + strand, within PGA1_c02180 at 198.525 kb on + strand, within PGA1_c02180 at 198.525 kb on + strand, within PGA1_c02180 at 198.533 kb on - strand, within PGA1_c02180 at 198.538 kb on - strand, within PGA1_c02180 at 198.544 kb on - strand, within PGA1_c02180 at 198.558 kb on + strand, within PGA1_c02180 at 198.583 kb on - strand, within PGA1_c02180 at 198.601 kb on - strand, within PGA1_c02180 at 198.619 kb on + strand, within PGA1_c02180 at 198.635 kb on - strand, within PGA1_c02180 at 198.638 kb on - strand, within PGA1_c02180 at 198.663 kb on - strand, within PGA1_c02180 at 198.679 kb on + strand, within PGA1_c02180 at 198.725 kb on + strand, within PGA1_c02180 at 198.725 kb on + strand, within PGA1_c02180 at 198.817 kb on + strand, within PGA1_c02180 at 198.834 kb on - strand, within PGA1_c02180 at 198.834 kb on - strand, within PGA1_c02180 at 198.908 kb on - strand, within PGA1_c02180 at 198.909 kb on - strand, within PGA1_c02180 at 198.916 kb on + strand, within PGA1_c02180 at 198.953 kb on + strand, within PGA1_c02180 at 198.953 kb on + strand, within PGA1_c02180 at 199.034 kb on + strand, within PGA1_c02180 at 199.034 kb on + strand, within PGA1_c02180 at 199.042 kb on - strand, within PGA1_c02180 at 199.058 kb on + strand, within PGA1_c02180 at 199.108 kb on + strand, within PGA1_c02180 at 199.123 kb on - strand, within PGA1_c02180 at 199.158 kb on - strand, within PGA1_c02180 at 199.191 kb on + strand, within PGA1_c02180 at 199.192 kb on + strand, within PGA1_c02180 at 199.199 kb on - strand, within PGA1_c02180 at 199.240 kb on - strand, within PGA1_c02180 at 199.266 kb on + strand, within PGA1_c02180 at 199.299 kb on + strand, within PGA1_c02180 at 199.365 kb on + strand, within PGA1_c02180 at 199.374 kb on - strand, within PGA1_c02180 at 199.385 kb on + strand, within PGA1_c02180 at 199.443 kb on - strand, within PGA1_c02180 at 199.444 kb on - strand, within PGA1_c02180 at 199.444 kb on - strand, within PGA1_c02180 at 199.477 kb on + strand, within PGA1_c02180 at 199.505 kb on + strand, within PGA1_c02180 at 199.508 kb on - strand, within PGA1_c02180 at 199.508 kb on - strand, within PGA1_c02180 at 199.518 kb on - strand, within PGA1_c02180 at 199.521 kb on + strand, within PGA1_c02180 at 199.544 kb on - strand, within PGA1_c02180 at 199.550 kb on + strand, within PGA1_c02180 at 199.626 kb on - strand at 199.630 kb on - strand at 199.654 kb on + strand at 199.654 kb on + strand at 199.662 kb on - strand at 199.711 kb on + strand at 199.711 kb on + strand at 199.719 kb on - strand at 199.719 kb on - strand at 199.745 kb on + strand at 200.037 kb on - strand, within PGA1_c02190 at 200.066 kb on + strand, within PGA1_c02190 at 200.074 kb on - strand, within PGA1_c02190 at 200.074 kb on - strand, within PGA1_c02190 at 200.259 kb on + strand, within PGA1_c02190 at 200.289 kb on - strand, within PGA1_c02190 at 200.297 kb on - strand, within PGA1_c02190 at 200.313 kb on + strand, within PGA1_c02190 at 200.355 kb on + strand, within PGA1_c02190 at 200.363 kb on - strand, within PGA1_c02190 at 200.410 kb on - strand, within PGA1_c02190 at 200.479 kb on - strand, within PGA1_c02190 at 200.499 kb on + strand, within PGA1_c02190 at 200.514 kb on + strand, within PGA1_c02190 at 200.514 kb on + strand, within PGA1_c02190 at 200.514 kb on + strand, within PGA1_c02190 at 200.520 kb on + strand, within PGA1_c02190 at 200.522 kb on - strand, within PGA1_c02190 at 200.525 kb on + strand, within PGA1_c02190 at 200.525 kb on + strand, within PGA1_c02190 at 200.525 kb on + strand, within PGA1_c02190 at 200.533 kb on - strand, within PGA1_c02190 at 200.533 kb on - strand, within PGA1_c02190 at 200.533 kb on - strand, within PGA1_c02190 at 200.533 kb on - strand, within PGA1_c02190 at 200.559 kb on + strand, within PGA1_c02190 at 200.585 kb on + strand, within PGA1_c02190 at 200.636 kb on + strand, within PGA1_c02190 at 200.636 kb on + strand, within PGA1_c02190 at 200.644 kb on - strand, within PGA1_c02190 at 200.660 kb on - strand, within PGA1_c02190 at 200.706 kb on - strand, within PGA1_c02190 at 200.727 kb on + strand, within PGA1_c02190
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 197,368 + +1.0 197,370 - +0.2 197,376 - -0.3 197,412 - +0.7 197,470 - +3.6 197,486 + +0.8 197,486 + -0.5 197,486 + +0.2 197,501 + -0.1 197,507 + +1.0 197,509 - +0.8 197,515 - -0.5 197,621 + PGA1_c02170 0.11 -2.0 197,621 + PGA1_c02170 0.11 +0.0 197,629 - PGA1_c02170 0.12 +1.6 197,629 - PGA1_c02170 0.12 -0.2 197,629 - PGA1_c02170 0.12 +0.9 197,681 + PGA1_c02170 0.18 -1.2 197,687 + PGA1_c02170 0.19 +0.0 197,771 + PGA1_c02170 0.30 +0.2 197,785 + PGA1_c02170 0.31 +0.0 197,785 + PGA1_c02170 0.31 +0.8 197,790 + PGA1_c02170 0.32 +1.4 197,790 + PGA1_c02170 0.32 -1.0 197,790 + PGA1_c02170 0.32 +2.0 197,790 + PGA1_c02170 0.32 -0.7 197,790 + PGA1_c02170 0.32 -0.0 197,792 + PGA1_c02170 0.32 +1.8 197,793 - PGA1_c02170 0.32 +0.7 197,867 - PGA1_c02170 0.42 +1.4 197,867 - PGA1_c02170 0.42 +0.2 197,942 + PGA1_c02170 0.51 +0.6 198,056 - PGA1_c02170 0.65 +0.8 198,096 + PGA1_c02170 0.70 +0.7 198,096 + PGA1_c02170 0.70 -0.1 198,104 - PGA1_c02170 0.71 +1.0 198,109 - PGA1_c02170 0.72 +0.7 198,109 - PGA1_c02170 0.72 +1.0 198,128 - PGA1_c02170 0.74 +1.2 198,168 - PGA1_c02170 0.79 +2.0 198,193 + PGA1_c02170 0.82 +0.8 198,201 - PGA1_c02170 0.83 -1.1 198,204 + PGA1_c02170 0.83 +0.0 198,220 - PGA1_c02170 0.85 +1.3 198,437 + +2.7 198,444 + -0.2 198,445 - +0.0 198,447 + +0.3 198,520 + PGA1_c02180 0.13 +1.7 198,525 + PGA1_c02180 0.13 +1.9 198,525 + PGA1_c02180 0.13 +1.1 198,525 + PGA1_c02180 0.13 -0.1 198,533 - PGA1_c02180 0.14 -1.0 198,538 - PGA1_c02180 0.14 -0.2 198,544 - PGA1_c02180 0.14 +0.5 198,558 + PGA1_c02180 0.15 +0.3 198,583 - PGA1_c02180 0.17 +0.0 198,601 - PGA1_c02180 0.18 +0.6 198,619 + PGA1_c02180 0.20 +0.0 198,635 - PGA1_c02180 0.21 -0.3 198,638 - PGA1_c02180 0.21 -1.6 198,663 - PGA1_c02180 0.23 +0.3 198,679 + PGA1_c02180 0.24 +1.1 198,725 + PGA1_c02180 0.27 +1.0 198,725 + PGA1_c02180 0.27 +0.5 198,817 + PGA1_c02180 0.34 +1.8 198,834 - PGA1_c02180 0.35 -0.2 198,834 - PGA1_c02180 0.35 +0.7 198,908 - PGA1_c02180 0.40 -3.0 198,909 - PGA1_c02180 0.40 -0.6 198,916 + PGA1_c02180 0.41 +0.0 198,953 + PGA1_c02180 0.43 -0.6 198,953 + PGA1_c02180 0.43 +2.0 199,034 + PGA1_c02180 0.49 -0.2 199,034 + PGA1_c02180 0.49 +1.8 199,042 - PGA1_c02180 0.49 +1.0 199,058 + PGA1_c02180 0.51 +0.2 199,108 + PGA1_c02180 0.54 -3.0 199,123 - PGA1_c02180 0.55 +1.6 199,158 - PGA1_c02180 0.58 -0.4 199,191 + PGA1_c02180 0.60 -1.4 199,192 + PGA1_c02180 0.60 +1.4 199,199 - PGA1_c02180 0.60 +1.3 199,240 - PGA1_c02180 0.63 -2.2 199,266 + PGA1_c02180 0.65 -0.8 199,299 + PGA1_c02180 0.68 +0.4 199,365 + PGA1_c02180 0.72 -0.6 199,374 - PGA1_c02180 0.73 +1.9 199,385 + PGA1_c02180 0.74 +2.7 199,443 - PGA1_c02180 0.78 +0.3 199,444 - PGA1_c02180 0.78 -0.2 199,444 - PGA1_c02180 0.78 +2.0 199,477 + PGA1_c02180 0.80 -2.2 199,505 + PGA1_c02180 0.82 -2.3 199,508 - PGA1_c02180 0.82 +1.1 199,508 - PGA1_c02180 0.82 +0.9 199,518 - PGA1_c02180 0.83 +1.0 199,521 + PGA1_c02180 0.83 +1.2 199,544 - PGA1_c02180 0.85 +0.0 199,550 + PGA1_c02180 0.85 -0.0 199,626 - -0.2 199,630 - -0.7 199,654 + +2.4 199,654 + +1.2 199,662 - -1.4 199,711 + -1.2 199,711 + +0.5 199,719 - +0.4 199,719 - +2.2 199,745 + -2.2 200,037 - PGA1_c02190 0.19 +0.8 200,066 + PGA1_c02190 0.21 +0.4 200,074 - PGA1_c02190 0.21 -1.0 200,074 - PGA1_c02190 0.21 -0.8 200,259 + PGA1_c02190 0.35 +0.1 200,289 - PGA1_c02190 0.37 -1.6 200,297 - PGA1_c02190 0.37 +0.0 200,313 + PGA1_c02190 0.39 +0.6 200,355 + PGA1_c02190 0.42 +0.7 200,363 - PGA1_c02190 0.42 -1.1 200,410 - PGA1_c02190 0.46 +0.2 200,479 - PGA1_c02190 0.51 +0.5 200,499 + PGA1_c02190 0.52 +1.5 200,514 + PGA1_c02190 0.53 +1.0 200,514 + PGA1_c02190 0.53 -1.3 200,514 + PGA1_c02190 0.53 -1.3 200,520 + PGA1_c02190 0.53 +1.5 200,522 - PGA1_c02190 0.54 -0.7 200,525 + PGA1_c02190 0.54 +0.5 200,525 + PGA1_c02190 0.54 -0.6 200,525 + PGA1_c02190 0.54 -0.3 200,533 - PGA1_c02190 0.54 +0.0 200,533 - PGA1_c02190 0.54 -0.7 200,533 - PGA1_c02190 0.54 +1.2 200,533 - PGA1_c02190 0.54 +1.2 200,559 + PGA1_c02190 0.56 +1.5 200,585 + PGA1_c02190 0.58 +0.4 200,636 + PGA1_c02190 0.62 -0.5 200,636 + PGA1_c02190 0.62 -1.0 200,644 - PGA1_c02190 0.62 +0.4 200,660 - PGA1_c02190 0.64 +1.2 200,706 - PGA1_c02190 0.67 -0.6 200,727 + PGA1_c02190 0.68 -1.3
Or see this region's nucleotide sequence