Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16790 and PGA1_c16800 are separated by 118 nucleotides PGA1_c16800 and PGA1_c16810 are separated by 167 nucleotides PGA1_c16810 and PGA1_c16820 are separated by 98 nucleotides PGA1_c16820 and PGA1_c16830 are separated by 50 nucleotides
PGA1_c16790: PGA1_c16790 - putative cold shock protein, at 1,752,612 to 1,753,148
_c16790
PGA1_c16800: PGA1_c16800 - pyridoxine/pyridoxamine 5'-phosphate oxidase PdxH, at 1,753,267 to 1,753,872
_c16800
PGA1_c16810: PGA1_c16810 - enoyl-[acyl-carrier-protein] reductase FabI, at 1,754,040 to 1,754,858
_c16810
PGA1_c16820: PGA1_c16820 - putative threonine efflux protein, at 1,754,957 to 1,755,571
_c16820
PGA1_c16830: PGA1_c16830 - xanthine phosphoribosyltransferase Gpt, at 1,755,622 to 1,756,125
_c16830
Position (kb)
1754
1755 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1753.067 kb on + strand, within PGA1_c16790 at 1753.080 kb on + strand, within PGA1_c16790 at 1753.081 kb on + strand, within PGA1_c16790 at 1753.099 kb on - strand at 1753.158 kb on - strand at 1753.890 kb on + strand at 1753.934 kb on - strand at 1753.934 kb on - strand at 1753.934 kb on - strand at 1753.973 kb on + strand at 1754.884 kb on + strand at 1754.884 kb on + strand at 1754.884 kb on + strand at 1754.905 kb on - strand at 1755.002 kb on - strand at 1755.026 kb on - strand, within PGA1_c16820 at 1755.072 kb on + strand, within PGA1_c16820 at 1755.215 kb on + strand, within PGA1_c16820 at 1755.233 kb on - strand, within PGA1_c16820 at 1755.322 kb on + strand, within PGA1_c16820 at 1755.335 kb on - strand, within PGA1_c16820 at 1755.336 kb on - strand, within PGA1_c16820 at 1755.374 kb on + strand, within PGA1_c16820 at 1755.380 kb on + strand, within PGA1_c16820 at 1755.392 kb on - strand, within PGA1_c16820 at 1755.397 kb on - strand, within PGA1_c16820 at 1755.447 kb on + strand, within PGA1_c16820 at 1755.449 kb on + strand, within PGA1_c16820 at 1755.593 kb on + strand at 1755.601 kb on - strand at 1755.751 kb on + strand, within PGA1_c16830 at 1755.767 kb on + strand, within PGA1_c16830 at 1755.850 kb on + strand, within PGA1_c16830 at 1755.851 kb on + strand, within PGA1_c16830
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 1,753,067 + PGA1_c16790 0.85 -0.7 1,753,080 + PGA1_c16790 0.87 -3.0 1,753,081 + PGA1_c16790 0.87 +1.7 1,753,099 - -2.2 1,753,158 - -2.3 1,753,890 + +1.1 1,753,934 - +1.0 1,753,934 - -1.2 1,753,934 - +0.0 1,753,973 + +2.2 1,754,884 + -1.4 1,754,884 + -0.8 1,754,884 + -1.3 1,754,905 - -1.3 1,755,002 - -0.6 1,755,026 - PGA1_c16820 0.11 +0.4 1,755,072 + PGA1_c16820 0.19 -0.6 1,755,215 + PGA1_c16820 0.42 +0.9 1,755,233 - PGA1_c16820 0.45 +0.2 1,755,322 + PGA1_c16820 0.59 +1.3 1,755,335 - PGA1_c16820 0.61 -0.3 1,755,336 - PGA1_c16820 0.62 -1.4 1,755,374 + PGA1_c16820 0.68 +0.6 1,755,380 + PGA1_c16820 0.69 +0.0 1,755,392 - PGA1_c16820 0.71 +0.7 1,755,397 - PGA1_c16820 0.72 -0.1 1,755,447 + PGA1_c16820 0.80 +0.1 1,755,449 + PGA1_c16820 0.80 +0.7 1,755,593 + +0.4 1,755,601 - +0.5 1,755,751 + PGA1_c16830 0.26 -0.5 1,755,767 + PGA1_c16830 0.29 +0.9 1,755,850 + PGA1_c16830 0.45 -0.8 1,755,851 + PGA1_c16830 0.45 +1.5
Or see this region's nucleotide sequence