Experiment: m.b. Ceftazidime 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14190 and PGA1_c14200 are separated by 273 nucleotides PGA1_c14200 and PGA1_c14210 are separated by 147 nucleotides
PGA1_c14190: PGA1_c14190 - putative transcriptional regulator, AraC family, at 1,473,948 to 1,474,772
_c14190
PGA1_c14200: PGA1_c14200 - tRNA delta(2)-isopentenylpyrophosphate transferase MiaA, at 1,475,046 to 1,475,918
_c14200
PGA1_c14210: PGA1_c14210 - uridylate kinase PyrH, at 1,476,066 to 1,476,815
_c14210
Position (kb)
1475
1476 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1474.055 kb on - strand, within PGA1_c14190 at 1474.085 kb on + strand, within PGA1_c14190 at 1474.093 kb on - strand, within PGA1_c14190 at 1474.093 kb on - strand, within PGA1_c14190 at 1474.114 kb on + strand, within PGA1_c14190 at 1474.150 kb on + strand, within PGA1_c14190 at 1474.199 kb on + strand, within PGA1_c14190 at 1474.220 kb on + strand, within PGA1_c14190 at 1474.264 kb on + strand, within PGA1_c14190 at 1474.264 kb on + strand, within PGA1_c14190 at 1474.272 kb on - strand, within PGA1_c14190 at 1474.272 kb on - strand at 1474.309 kb on + strand, within PGA1_c14190 at 1474.317 kb on - strand, within PGA1_c14190 at 1474.360 kb on + strand, within PGA1_c14190 at 1474.401 kb on - strand, within PGA1_c14190 at 1474.420 kb on + strand, within PGA1_c14190 at 1474.452 kb on - strand, within PGA1_c14190 at 1474.502 kb on + strand, within PGA1_c14190 at 1474.510 kb on - strand, within PGA1_c14190 at 1474.519 kb on + strand, within PGA1_c14190 at 1474.519 kb on + strand, within PGA1_c14190 at 1474.593 kb on + strand, within PGA1_c14190 at 1474.601 kb on - strand, within PGA1_c14190 at 1474.601 kb on - strand, within PGA1_c14190 at 1474.634 kb on + strand, within PGA1_c14190 at 1474.635 kb on + strand, within PGA1_c14190 at 1474.697 kb on + strand at 1474.743 kb on - strand at 1474.778 kb on + strand at 1474.784 kb on + strand at 1474.792 kb on - strand at 1474.797 kb on - strand at 1474.896 kb on - strand at 1474.896 kb on - strand at 1474.974 kb on - strand at 1474.974 kb on - strand at 1475.006 kb on - strand at 1475.020 kb on + strand at 1475.042 kb on + strand at 1475.957 kb on + strand at 1475.957 kb on + strand at 1475.957 kb on + strand at 1475.960 kb on - strand at 1475.965 kb on - strand at 1475.997 kb on + strand at 1476.812 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Ceftazidime 0.001 mg/ml remove 1,474,055 - PGA1_c14190 0.13 +0.9 1,474,085 + PGA1_c14190 0.17 -0.3 1,474,093 - PGA1_c14190 0.18 -0.8 1,474,093 - PGA1_c14190 0.18 +1.0 1,474,114 + PGA1_c14190 0.20 +1.7 1,474,150 + PGA1_c14190 0.24 +1.4 1,474,199 + PGA1_c14190 0.30 +1.1 1,474,220 + PGA1_c14190 0.33 +1.8 1,474,264 + PGA1_c14190 0.38 +1.5 1,474,264 + PGA1_c14190 0.38 -0.8 1,474,272 - PGA1_c14190 0.39 -1.2 1,474,272 - +1.1 1,474,309 + PGA1_c14190 0.44 +0.1 1,474,317 - PGA1_c14190 0.45 +2.5 1,474,360 + PGA1_c14190 0.50 +2.8 1,474,401 - PGA1_c14190 0.55 +0.9 1,474,420 + PGA1_c14190 0.57 +0.4 1,474,452 - PGA1_c14190 0.61 +1.1 1,474,502 + PGA1_c14190 0.67 +1.3 1,474,510 - PGA1_c14190 0.68 +2.1 1,474,519 + PGA1_c14190 0.69 +1.0 1,474,519 + PGA1_c14190 0.69 +2.1 1,474,593 + PGA1_c14190 0.78 +1.0 1,474,601 - PGA1_c14190 0.79 +1.8 1,474,601 - PGA1_c14190 0.79 +3.6 1,474,634 + PGA1_c14190 0.83 +1.9 1,474,635 + PGA1_c14190 0.83 +0.8 1,474,697 + +1.0 1,474,743 - +2.0 1,474,778 + +1.0 1,474,784 + +1.9 1,474,792 - +1.6 1,474,797 - +1.1 1,474,896 - +0.2 1,474,896 - +2.8 1,474,974 - +0.7 1,474,974 - -0.4 1,475,006 - -0.6 1,475,020 + +1.5 1,475,042 + +0.7 1,475,957 + +2.4 1,475,957 + +1.1 1,475,957 + -1.5 1,475,960 - +1.2 1,475,965 - -0.0 1,475,997 + +1.3 1,476,812 - -0.4
Or see this region's nucleotide sequence