Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13820

Experiment: m.b. Ceftazidime 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Ceftazidime 0.001 mg/ml
1,427,650	+		PGA1_c13810	0.18	+0.7
1,427,699	+		PGA1_c13810	0.22	+3.7
1,427,707	-		PGA1_c13810	0.23	+0.1
1,427,707	-		PGA1_c13810	0.23	-0.2
1,427,730	+		PGA1_c13810	0.25	-0.1
1,427,730	+		PGA1_c13810	0.25	+0.3
1,427,730	+		PGA1_c13810	0.25	-0.1
1,427,735	+		PGA1_c13810	0.25	-1.5
1,427,738	-		PGA1_c13810	0.25	-1.4
1,427,738	-		PGA1_c13810	0.25	-1.0
1,427,738	-		PGA1_c13810	0.25	+0.3
1,427,788	+		PGA1_c13810	0.30	-1.1
1,427,790	+		PGA1_c13810	0.30	-0.2
1,427,798	-		PGA1_c13810	0.30	-0.3
1,427,798	-		PGA1_c13810	0.30	+0.3
1,427,824	-		PGA1_c13810	0.33	+0.2
1,427,852	+		PGA1_c13810	0.35	-0.8
1,427,865	+		PGA1_c13810	0.36	+0.9
1,427,972	+		PGA1_c13810	0.45	-1.8
1,427,980	-		PGA1_c13810	0.46	+1.5
1,427,980	-		PGA1_c13810	0.46	+1.7
1,427,996	+		PGA1_c13810	0.47	+0.4
1,427,996	+		PGA1_c13810	0.47	-1.1
1,427,996	+		PGA1_c13810	0.47	-0.3
1,427,997	-		PGA1_c13810	0.48	-1.2
1,427,997	-		PGA1_c13810	0.48	-1.1
1,428,079	+		PGA1_c13810	0.55	-0.2
1,428,126	-		PGA1_c13810	0.59	-1.3
1,428,163	-		PGA1_c13810	0.62	-0.0
1,428,203	+		PGA1_c13810	0.65	-1.4
1,428,211	-		PGA1_c13810	0.66	-0.8
1,428,237	+		PGA1_c13810	0.68	-0.8
1,428,245	-		PGA1_c13810	0.69	-2.7
1,428,245	-		PGA1_c13810	0.69	+0.6
1,428,247	+		PGA1_c13810	0.69	+0.7
1,428,252	+		PGA1_c13810	0.69	-1.0
1,428,252	+		PGA1_c13810	0.69	-0.2
1,428,252	+		PGA1_c13810	0.69	-2.2
1,428,252	+		PGA1_c13810	0.69	-0.2
1,428,252	+		PGA1_c13810	0.69	+0.7
1,428,255	-		PGA1_c13810	0.70	-1.1
1,428,257	+		PGA1_c13810	0.70	+0.8
1,428,260	-		PGA1_c13810	0.70	-0.9
1,428,260	-		PGA1_c13810	0.70	-1.5
1,428,260	-		PGA1_c13810	0.70	+1.2
1,428,260	-		PGA1_c13810	0.70	+1.1
1,428,260	-		PGA1_c13810	0.70	+0.9
1,428,265	-		PGA1_c13810	0.71	+0.4
1,428,316	+		PGA1_c13810	0.75	-2.5
1,428,322	-		PGA1_c13810	0.75	+0.1
1,428,376	+		PGA1_c13810	0.80	+0.6
1,428,418	+		PGA1_c13810	0.84	+0.6
1,428,418	+		PGA1_c13810	0.84	+1.4
1,428,423	+		PGA1_c13810	0.84	-0.4
1,428,423	+		PGA1_c13810	0.84	+0.8
1,428,426	-		PGA1_c13810	0.84	-1.1
1,428,430	+		PGA1_c13810	0.85	-1.0
1,428,438	-		PGA1_c13810	0.85	-0.9
1,428,518	+				-0.5
1,428,526	-				-0.2
1,428,604	+				-3.5
1,428,612	+				+0.6
1,428,685	+				-0.3
1,428,693	-				+1.6
1,428,742	-		PGA1_c13820	0.16	+0.1
1,428,852	+		PGA1_c13820	0.30	-0.2
1,428,858	+		PGA1_c13820	0.31	+1.0
1,428,866	-		PGA1_c13820	0.32	-2.1
1,428,881	+		PGA1_c13820	0.34	-0.2
1,428,884	-		PGA1_c13820	0.35	-0.7
1,428,911	+		PGA1_c13820	0.38	+1.3
1,428,919	-		PGA1_c13820	0.39	+0.5
1,428,962	+		PGA1_c13820	0.45	-0.8
1,429,015	-		PGA1_c13820	0.52	-0.4
1,429,059	+		PGA1_c13820	0.57	-1.2
1,429,067	-		PGA1_c13820	0.58	-0.1
1,429,075	+		PGA1_c13820	0.59	-2.0
1,429,075	+		PGA1_c13820	0.59	+0.8
1,429,083	-		PGA1_c13820	0.60	+0.8
1,429,099	-		PGA1_c13820	0.62	+1.2
1,429,109	-		PGA1_c13820	0.64	+0.8
1,429,138	+		PGA1_c13820	0.67	+0.8
1,429,138	+		PGA1_c13820	0.67	-0.1
1,429,138	+		PGA1_c13820	0.67	+2.4
1,429,139	+		PGA1_c13820	0.68	+0.1
1,429,139	-		PGA1_c13820	0.68	+3.1
1,429,145	+		PGA1_c13820	0.68	+2.0
1,429,146	-		PGA1_c13820	0.68	+0.2
1,429,146	-		PGA1_c13820	0.68	+0.5
1,429,146	-		PGA1_c13820	0.68	-1.8
1,429,153	-		PGA1_c13820	0.69	+1.2
1,429,181	+		PGA1_c13820	0.73	-0.4
1,429,191	-		PGA1_c13820	0.74	-0.1
1,429,193	+		PGA1_c13820	0.75	+1.3
1,429,201	-		PGA1_c13820	0.76	-1.0
1,429,209	-		PGA1_c13820	0.77	-0.6
1,429,226	-		PGA1_c13820	0.79	+0.6
1,429,226	-		PGA1_c13820	0.79	+1.2
1,429,226	-		PGA1_c13820	0.79	+0.5
1,429,231	-		PGA1_c13820	0.79	+2.0
1,429,231	-		PGA1_c13820	0.79	+0.4
1,429,247	+		PGA1_c13820	0.82	+0.4
1,429,255	-		PGA1_c13820	0.83	+0.3
1,429,255	-		PGA1_c13820	0.83	+0.4
1,429,255	-		PGA1_c13820	0.83	+1.8
1,429,274	-		PGA1_c13820	0.85	-0.5
1,429,279	-		PGA1_c13820	0.86	+0.3
1,429,337	+				+1.0
1,429,352	+				+0.4
1,429,383	+				+1.0
1,429,413	+				+1.1
1,429,421	-				+0.1
1,429,459	-				+1.5
1,429,459	-				-2.0
1,429,526	+				+1.1
1,429,585	-				-0.7
1,429,585	-				+0.5
1,429,601	+		PGA1_c13830	0.10	-0.1
1,429,664	-		PGA1_c13830	0.21	+0.1
1,429,664	-		PGA1_c13830	0.21	-0.2
1,429,678	-		PGA1_c13830	0.23	+0.2
1,429,760	+		PGA1_c13830	0.37	+0.2
1,429,799	+		PGA1_c13830	0.44	+1.4
1,429,802	-		PGA1_c13830	0.44	-1.1
1,429,815	+		PGA1_c13830	0.46	-0.8
1,429,902	+		PGA1_c13830	0.61	-1.1
1,429,908	+		PGA1_c13830	0.62	+0.7
1,429,946	+		PGA1_c13830	0.69	-0.0
1,430,010	+		PGA1_c13830	0.79	-0.3
1,430,020	+		PGA1_c13830	0.81	+0.1
1,430,020	+		PGA1_c13830	0.81	+0.3
1,430,033	-		PGA1_c13830	0.83	+0.5
1,430,040	+		PGA1_c13830	0.84	-0.6
1,430,048	+		PGA1_c13830	0.86	-0.2
1,430,050	+		PGA1_c13830	0.86	-0.5
1,430,050	-		PGA1_c13830	0.86	-1.7
1,430,094	+				+0.3
1,430,102	-				+0.9
1,430,111	+				+0.4
1,430,126	+				-0.1
1,430,126	+				-0.2
1,430,134	-				+1.1
1,430,134	-				+0.2
1,430,167	+				-1.0
1,430,175	-				-1.1
1,430,175	-				-1.1
1,430,175	-				-0.1
1,430,175	-				+1.4
1,430,175	-				+0.4
1,430,175	-				-2.2
1,430,175	-				-0.4
1,430,182	+				-0.7
1,430,182	+				+0.2
1,430,182	+				+0.5
1,430,192	+				+0.1
1,430,192	+				+0.5
1,430,192	+				-1.0
1,430,192	+				+0.0
1,430,192	+				+0.2
1,430,192	+				-0.3
1,430,192	+				-0.4
1,430,192	+				-0.2
1,430,192	+				+0.4
1,430,192	+				-0.8
1,430,196	+				+1.4
1,430,198	+				+0.9
1,430,198	+				-0.9
1,430,198	+				-0.9
1,430,198	+				+0.7
1,430,200	-				-1.7
1,430,200	-				+1.5
1,430,200	-				+0.3
1,430,200	-				-0.8
1,430,200	-				+1.0
1,430,200	-				-2.5
1,430,200	-				-2.0
1,430,200	-				-0.6
1,430,200	-				-0.4
1,430,205	-				+0.2
1,430,206	-				+0.3
1,430,206	-				+1.3
1,430,207	-				-2.7
1,430,253	+				+0.7
1,430,253	+				+0.6
1,430,253	+				+0.1
1,430,260	+				-0.1
1,430,261	-				+0.1
1,430,261	-				+0.3
1,430,262	+				+0.0
1,430,262	+				+1.3
1,430,262	+				-0.7
1,430,262	+				+0.8
1,430,262	+				-0.7
1,430,262	+				+2.9
1,430,262	+				+0.2
1,430,264	+				-1.4
1,430,270	-				+0.4
1,430,270	-				+2.0
1,430,270	-				+2.4
1,430,270	-				+0.6
1,430,270	-				-1.4
1,430,270	-				-2.8
1,430,291	+				+0.6
1,430,291	+				+0.8
1,430,291	+				+0.5
1,430,291	+				+0.6
1,430,291	+				+1.6
1,430,291	+				+1.1
1,430,291	+				-1.0
1,430,294	+				+0.6
1,430,299	-				-0.7
1,430,299	-				+0.8
1,430,299	-				-1.8
1,430,299	-				+1.2
1,430,301	+				-0.2
1,430,301	+				+0.1
1,430,301	+				+1.0
1,430,301	+				+0.7
1,430,302	+				-0.2
1,430,302	+				-0.5
1,430,309	-				-2.2
1,430,309	-				-1.7
1,430,309	-				+0.2
1,430,309	-				+0.8
1,430,310	-				-0.2
1,430,310	-				+1.8
1,430,310	-				-0.5
1,430,312	+				-0.6
1,430,318	+				-0.9
1,430,325	+				+0.2
1,430,326	-				-0.4
1,430,326	-				+1.4
1,430,330	+				+1.3
1,430,330	+				+0.8
1,430,330	+				-0.6
1,430,330	+				-0.9
1,430,330	+				+0.2
1,430,330	+				-0.4
1,430,330	+				-1.7
1,430,330	+				+0.2
1,430,330	+				-2.0
1,430,330	+				+0.2
1,430,330	+				-2.0
1,430,338	-				-0.9
1,430,338	-				+0.7
1,430,338	-				-0.9
1,430,338	-				+1.0
1,430,338	-				-2.8
1,430,338	-				-0.3
1,430,338	-				-0.8
1,430,338	-				-0.2
1,430,338	-				-0.4
1,430,338	-				-0.2
1,430,340	+				+0.0
1,430,340	+				+0.1
1,430,348	-				-1.5
1,430,348	-				+0.4
1,430,348	-				-1.5
1,430,359	+				-0.3
1,430,359	+				-1.2
1,430,359	+				+0.5
1,430,359	+				+0.1
1,430,359	+				-0.5
1,430,367	-				+1.2
1,430,367	-				-0.8
1,430,367	-				+1.0
1,430,367	-				+0.4
1,430,369	+				+0.8
1,430,377	-				+1.5
1,430,377	-				-2.8
1,430,377	-				-0.3
1,430,384	+				-0.8
1,430,384	+				-0.5