Strain Fitness in Dechlorosoma suillum PS around Dsui_3273

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3271 and Dsui_3272 are separated by 16 nucleotidesDsui_3272 and Dsui_3273 are separated by 81 nucleotidesDsui_3273 and Dsui_3274 are separated by 237 nucleotides Dsui_3271: Dsui_3271 - ATP-dependent protease Clp, ATPase subunit, at 3,509,723 to 3,510,724 _3271 Dsui_3272: Dsui_3272 - putative threonine efflux protein, at 3,510,741 to 3,511,388 _3272 Dsui_3273: Dsui_3273 - carbonic anhydrase, at 3,511,470 to 3,512,105 _3273 Dsui_3274: Dsui_3274 - dihydrodipicolinate reductase, at 3,512,343 to 3,513,014 _3274 Position (kb) 3511 3512 3513Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3510.474 kb on - strandat 3510.474 kb on - strandat 3510.636 kb on + strandat 3510.643 kb on + strandat 3510.643 kb on + strandat 3510.651 kb on - strandat 3510.651 kb on - strandat 3510.712 kb on - strandat 3510.712 kb on - strandat 3510.733 kb on + strandat 3510.759 kb on + strandat 3510.769 kb on + strandat 3510.769 kb on + strandat 3510.777 kb on - strandat 3510.777 kb on - strandat 3510.777 kb on - strandat 3510.793 kb on + strandat 3510.841 kb on - strand, within Dsui_3272at 3510.903 kb on - strand, within Dsui_3272at 3510.919 kb on + strand, within Dsui_3272at 3511.014 kb on - strand, within Dsui_3272at 3511.127 kb on + strand, within Dsui_3272at 3511.135 kb on - strandat 3511.183 kb on + strand, within Dsui_3272at 3511.191 kb on - strandat 3511.229 kb on + strand, within Dsui_3272at 3511.232 kb on + strandat 3511.240 kb on + strand, within Dsui_3272at 3511.464 kb on - strandat 3511.464 kb on - strandat 3511.466 kb on + strandat 3511.466 kb on + strandat 3511.485 kb on - strandat 3511.582 kb on + strandat 3511.585 kb on - strand, within Dsui_3273at 3511.585 kb on - strand, within Dsui_3273at 3511.592 kb on + strandat 3511.677 kb on + strandat 3511.698 kb on - strand, within Dsui_3273at 3511.707 kb on + strandat 3511.707 kb on + strandat 3511.714 kb on + strandat 3511.722 kb on - strand, within Dsui_3273at 3511.753 kb on + strand, within Dsui_3273at 3511.904 kb on - strand, within Dsui_3273at 3511.981 kb on - strand, within Dsui_3273at 3512.006 kb on + strandat 3512.014 kb on - strand, within Dsui_3273at 3512.014 kb on - strand, within Dsui_3273at 3512.014 kb on - strand, within Dsui_3273at 3512.045 kb on - strandat 3512.050 kb on - strandat 3512.105 kb on + strandat 3512.113 kb on - strandat 3512.115 kb on + strandat 3512.115 kb on + strandat 3512.115 kb on + strandat 3512.115 kb on + strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.123 kb on - strandat 3512.153 kb on - strandat 3512.265 kb on - strandat 3512.300 kb on + strandat 3512.308 kb on - strandat 3512.308 kb on - strandat 3512.352 kb on + strandat 3512.360 kb on - strandat 3512.547 kb on + strand, within Dsui_3274at 3512.555 kb on + strand, within Dsui_3274at 3512.663 kb on + strand, within Dsui_3274at 3512.686 kb on - strand, within Dsui_3274at 3512.725 kb on + strandat 3512.725 kb on + strand, within Dsui_3274at 3512.731 kb on + strand, within Dsui_3274at 3512.733 kb on - strand, within Dsui_3274at 3512.733 kb on - strand, within Dsui_3274at 3512.752 kb on - strand, within Dsui_3274at 3512.763 kb on + strand, within Dsui_3274at 3512.778 kb on + strandat 3512.826 kb on + strandat 3512.860 kb on + strand, within Dsui_3274at 3512.868 kb on + strandat 3512.915 kb on - strand, within Dsui_3274at 3512.931 kb on - strand, within Dsui_3274at 3512.935 kb on + strand, within Dsui_3274at 3512.936 kb on + strand, within Dsui_3274at 3512.943 kb on - strand, within Dsui_3274at 3512.944 kb on - strand, within Dsui_3274at 3512.949 kb on + strandat 3512.985 kb on - strandat 3512.987 kb on + strandat 3513.028 kb on + strandat 3513.044 kb on + strandat 3513.044 kb on + strandat 3513.044 kb on - strandat 3513.045 kb on - strandat 3513.052 kb on - strandat 3513.057 kb on + strandat 3513.057 kb on + strandat 3513.062 kb on - strandat 3513.067 kb on + strandat 3513.067 kb on + strandat 3513.075 kb on - strandat 3513.075 kb on - strandat 3513.075 kb on - strandat 3513.083 kb on + strandat 3513.084 kb on + strandat 3513.091 kb on - strandat 3513.096 kb on + strandat 3513.102 kb on + strandat 3513.102 kb on + strandat 3513.102 kb on + strandat 3513.102 kb on + strandat 3513.102 kb on + strandat 3513.102 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,510,474 - +2.2
3,510,474 - -0.4
3,510,636 + -0.1
3,510,643 + +0.9
3,510,643 + +0.9
3,510,651 - +0.1
3,510,651 - +0.3
3,510,712 - +0.5
3,510,712 - +0.9
3,510,733 + +0.9
3,510,759 + -0.8
3,510,769 + -0.1
3,510,769 + +0.1
3,510,777 - -0.4
3,510,777 - +0.4
3,510,777 - -0.1
3,510,793 + -0.2
3,510,841 - Dsui_3272 0.15 -0.6
3,510,903 - Dsui_3272 0.25 -0.3
3,510,919 + Dsui_3272 0.27 +0.4
3,511,014 - Dsui_3272 0.42 +0.7
3,511,127 + Dsui_3272 0.60 +1.4
3,511,135 - +0.3
3,511,183 + Dsui_3272 0.68 -0.6
3,511,191 - -0.7
3,511,229 + Dsui_3272 0.75 +0.3
3,511,232 + -0.1
3,511,240 + Dsui_3272 0.77 -0.8
3,511,464 - -0.2
3,511,464 - -1.0
3,511,466 + +0.9
3,511,466 + -0.1
3,511,485 - +0.2
3,511,582 + +0.3
3,511,585 - Dsui_3273 0.18 -0.6
3,511,585 - Dsui_3273 0.18 -1.0
3,511,592 + -0.1
3,511,677 + +0.3
3,511,698 - Dsui_3273 0.36 +2.9
3,511,707 + +0.9
3,511,707 + +2.9
3,511,714 + +0.9
3,511,722 - Dsui_3273 0.40 +0.5
3,511,753 + Dsui_3273 0.44 -0.6
3,511,904 - Dsui_3273 0.68 -0.3
3,511,981 - Dsui_3273 0.80 -1.0
3,512,006 + +1.3
3,512,014 - Dsui_3273 0.86 -1.3
3,512,014 - Dsui_3273 0.86 +0.4
3,512,014 - Dsui_3273 0.86 -0.8
3,512,045 - +0.9
3,512,050 - -2.0
3,512,105 + +1.9
3,512,113 - +0.5
3,512,115 + +1.9
3,512,115 + +0.9
3,512,115 + +1.9
3,512,115 + +0.9
3,512,123 - -0.2
3,512,123 - -0.6
3,512,123 - +1.9
3,512,123 - -0.1
3,512,123 - -0.2
3,512,123 - -0.6
3,512,123 - -0.3
3,512,123 - +0.0
3,512,123 - +0.4
3,512,123 - +1.9
3,512,123 - +0.8
3,512,123 - -0.4
3,512,123 - -0.3
3,512,123 - -0.1
3,512,123 - +0.3
3,512,153 - +0.5
3,512,265 - +0.2
3,512,300 + -0.7
3,512,308 - +0.9
3,512,308 - -0.1
3,512,352 + +0.9
3,512,360 - +0.6
3,512,547 + Dsui_3274 0.30 -0.4
3,512,555 + Dsui_3274 0.32 -1.4
3,512,663 + Dsui_3274 0.48 -0.3
3,512,686 - Dsui_3274 0.51 +0.8
3,512,725 + +0.9
3,512,725 + Dsui_3274 0.57 -0.3
3,512,731 + Dsui_3274 0.58 -0.2
3,512,733 - Dsui_3274 0.58 -0.1
3,512,733 - Dsui_3274 0.58 +0.5
3,512,752 - Dsui_3274 0.61 -1.1
3,512,763 + Dsui_3274 0.62 -1.1
3,512,778 + -0.4
3,512,826 + +1.9
3,512,860 + Dsui_3274 0.77 -0.0
3,512,868 + +0.3
3,512,915 - Dsui_3274 0.85 +0.3
3,512,931 - Dsui_3274 0.88 +0.9
3,512,935 + Dsui_3274 0.88 +1.1
3,512,936 + Dsui_3274 0.88 -0.4
3,512,943 - Dsui_3274 0.89 -0.3
3,512,944 - Dsui_3274 0.89 +0.2
3,512,949 + +0.9
3,512,985 - +2.9
3,512,987 + +1.2
3,513,028 + -0.4
3,513,044 + +0.5
3,513,044 + +0.4
3,513,044 - -0.1
3,513,045 - +0.0
3,513,052 - -1.3
3,513,057 + +0.3
3,513,057 + +0.9
3,513,062 - +0.9
3,513,067 + -1.4
3,513,067 + +0.9
3,513,075 - -1.1
3,513,075 - +1.9
3,513,075 - +0.9
3,513,083 + -0.3
3,513,084 + -0.1
3,513,091 - +0.3
3,513,096 + +1.2
3,513,102 + -0.1
3,513,102 + +2.3
3,513,102 + +0.5
3,513,102 + +1.7
3,513,102 + +0.9
3,513,102 + +0.6

Or see this region's nucleotide sequence