Experiment: Anaero. lactate (C), nitrate electron acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3121 and Dsui_3122 are separated by 227 nucleotides Dsui_3122 and Dsui_3123 overlap by 26 nucleotides Dsui_3123 and Dsui_3124 are separated by 18 nucleotides Dsui_3124 and Dsui_3125 are separated by 155 nucleotides
Dsui_3121: Dsui_3121 - hypothetical protein, at 3,343,115 to 3,343,849
_3121
Dsui_3122: Dsui_3122 - PAS domain S-box, at 3,344,077 to 3,344,598
_3122
Dsui_3123: Dsui_3123 - methyl-accepting chemotaxis protein, at 3,344,573 to 3,345,868
_3123
Dsui_3124: Dsui_3124 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,345,887 to 3,346,255
_3124
Dsui_3125: Dsui_3125 - cytochrome c, mono- and diheme variants family, at 3,346,411 to 3,348,009
_3125
Position (kb)
3344
3345
3346 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3343.597 kb on + strand, within Dsui_3121 at 3343.814 kb on + strand at 3343.942 kb on - strand at 3344.024 kb on - strand at 3344.090 kb on - strand at 3344.115 kb on + strand at 3344.294 kb on + strand, within Dsui_3122 at 3344.294 kb on + strand, within Dsui_3122 at 3344.427 kb on + strand, within Dsui_3122 at 3344.432 kb on + strand, within Dsui_3122 at 3344.446 kb on - strand at 3344.537 kb on - strand, within Dsui_3122 at 3344.561 kb on - strand at 3344.566 kb on - strand at 3344.578 kb on - strand at 3344.733 kb on + strand, within Dsui_3123 at 3344.765 kb on + strand, within Dsui_3123 at 3344.773 kb on - strand, within Dsui_3123 at 3344.945 kb on - strand, within Dsui_3123 at 3345.256 kb on - strand, within Dsui_3123 at 3345.377 kb on + strand, within Dsui_3123 at 3345.428 kb on + strand, within Dsui_3123 at 3345.459 kb on - strand, within Dsui_3123 at 3345.596 kb on - strand, within Dsui_3123 at 3345.653 kb on + strand, within Dsui_3123 at 3345.676 kb on + strand, within Dsui_3123 at 3345.700 kb on + strand, within Dsui_3123 at 3345.700 kb on + strand, within Dsui_3123 at 3345.752 kb on + strand at 3345.753 kb on + strand at 3345.775 kb on + strand at 3345.788 kb on - strand at 3345.904 kb on + strand at 3345.910 kb on + strand at 3345.959 kb on + strand, within Dsui_3124 at 3345.987 kb on + strand, within Dsui_3124 at 3345.987 kb on + strand, within Dsui_3124 at 3346.058 kb on - strand, within Dsui_3124 at 3346.354 kb on + strand at 3346.621 kb on - strand, within Dsui_3125 at 3346.813 kb on - strand, within Dsui_3125 at 3346.816 kb on + strand, within Dsui_3125 at 3346.824 kb on - strand, within Dsui_3125 at 3346.825 kb on - strand, within Dsui_3125 at 3346.832 kb on - strand, within Dsui_3125 at 3346.846 kb on + strand, within Dsui_3125
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor remove 3,343,597 + Dsui_3121 0.66 -0.3 3,343,814 + -0.5 3,343,942 - +3.5 3,344,024 - -0.9 3,344,090 - +2.9 3,344,115 + -0.2 3,344,294 + Dsui_3122 0.42 -0.6 3,344,294 + Dsui_3122 0.42 +0.1 3,344,427 + Dsui_3122 0.67 -0.1 3,344,432 + Dsui_3122 0.68 +0.1 3,344,446 - +2.9 3,344,537 - Dsui_3122 0.88 +0.3 3,344,561 - +0.1 3,344,566 - -0.5 3,344,578 - +0.1 3,344,733 + Dsui_3123 0.12 +0.1 3,344,765 + Dsui_3123 0.15 -0.0 3,344,773 - Dsui_3123 0.15 +0.3 3,344,945 - Dsui_3123 0.29 +0.1 3,345,256 - Dsui_3123 0.53 +0.3 3,345,377 + Dsui_3123 0.62 +0.1 3,345,428 + Dsui_3123 0.66 -0.1 3,345,459 - Dsui_3123 0.68 +0.5 3,345,596 - Dsui_3123 0.79 +0.6 3,345,653 + Dsui_3123 0.83 -0.0 3,345,676 + Dsui_3123 0.85 +1.1 3,345,700 + Dsui_3123 0.87 +0.4 3,345,700 + Dsui_3123 0.87 +0.4 3,345,752 + +0.7 3,345,753 + -0.4 3,345,775 + -0.4 3,345,788 - -0.6 3,345,904 + +0.2 3,345,910 + +0.5 3,345,959 + Dsui_3124 0.20 -0.5 3,345,987 + Dsui_3124 0.27 -0.3 3,345,987 + Dsui_3124 0.27 -0.1 3,346,058 - Dsui_3124 0.46 -0.6 3,346,354 + +0.9 3,346,621 - Dsui_3125 0.13 +0.1 3,346,813 - Dsui_3125 0.25 +0.3 3,346,816 + Dsui_3125 0.25 -0.0 3,346,824 - Dsui_3125 0.26 -0.3 3,346,825 - Dsui_3125 0.26 -0.4 3,346,832 - Dsui_3125 0.26 -0.4 3,346,846 + Dsui_3125 0.27 -0.7
Or see this region's nucleotide sequence