Strain Fitness in Dechlorosoma suillum PS around Dsui_3123

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3121 and Dsui_3122 are separated by 227 nucleotidesDsui_3122 and Dsui_3123 overlap by 26 nucleotidesDsui_3123 and Dsui_3124 are separated by 18 nucleotidesDsui_3124 and Dsui_3125 are separated by 155 nucleotides Dsui_3121: Dsui_3121 - hypothetical protein, at 3,343,115 to 3,343,849 _3121 Dsui_3122: Dsui_3122 - PAS domain S-box, at 3,344,077 to 3,344,598 _3122 Dsui_3123: Dsui_3123 - methyl-accepting chemotaxis protein, at 3,344,573 to 3,345,868 _3123 Dsui_3124: Dsui_3124 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,345,887 to 3,346,255 _3124 Dsui_3125: Dsui_3125 - cytochrome c, mono- and diheme variants family, at 3,346,411 to 3,348,009 _3125 Position (kb) 3344 3345 3346Strain fitness (log2 ratio) -1 0 1 2 3at 3343.597 kb on + strand, within Dsui_3121at 3343.814 kb on + strandat 3343.942 kb on - strandat 3344.024 kb on - strandat 3344.090 kb on - strandat 3344.115 kb on + strandat 3344.294 kb on + strand, within Dsui_3122at 3344.294 kb on + strand, within Dsui_3122at 3344.427 kb on + strand, within Dsui_3122at 3344.432 kb on + strand, within Dsui_3122at 3344.446 kb on - strandat 3344.537 kb on - strand, within Dsui_3122at 3344.561 kb on - strandat 3344.566 kb on - strandat 3344.578 kb on - strandat 3344.733 kb on + strand, within Dsui_3123at 3344.765 kb on + strand, within Dsui_3123at 3344.773 kb on - strand, within Dsui_3123at 3344.945 kb on - strand, within Dsui_3123at 3345.256 kb on - strand, within Dsui_3123at 3345.377 kb on + strand, within Dsui_3123at 3345.428 kb on + strand, within Dsui_3123at 3345.459 kb on - strand, within Dsui_3123at 3345.596 kb on - strand, within Dsui_3123at 3345.653 kb on + strand, within Dsui_3123at 3345.676 kb on + strand, within Dsui_3123at 3345.700 kb on + strand, within Dsui_3123at 3345.700 kb on + strand, within Dsui_3123at 3345.752 kb on + strandat 3345.753 kb on + strandat 3345.775 kb on + strandat 3345.788 kb on - strandat 3345.904 kb on + strandat 3345.910 kb on + strandat 3345.959 kb on + strand, within Dsui_3124at 3345.987 kb on + strand, within Dsui_3124at 3345.987 kb on + strand, within Dsui_3124at 3346.058 kb on - strand, within Dsui_3124at 3346.354 kb on + strandat 3346.621 kb on - strand, within Dsui_3125at 3346.813 kb on - strand, within Dsui_3125at 3346.816 kb on + strand, within Dsui_3125at 3346.824 kb on - strand, within Dsui_3125at 3346.825 kb on - strand, within Dsui_3125at 3346.832 kb on - strand, within Dsui_3125at 3346.846 kb on + strand, within Dsui_3125

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,343,597 + Dsui_3121 0.66 -0.3
3,343,814 + -0.5
3,343,942 - +3.5
3,344,024 - -0.9
3,344,090 - +2.9
3,344,115 + -0.2
3,344,294 + Dsui_3122 0.42 -0.6
3,344,294 + Dsui_3122 0.42 +0.1
3,344,427 + Dsui_3122 0.67 -0.1
3,344,432 + Dsui_3122 0.68 +0.1
3,344,446 - +2.9
3,344,537 - Dsui_3122 0.88 +0.3
3,344,561 - +0.1
3,344,566 - -0.5
3,344,578 - +0.1
3,344,733 + Dsui_3123 0.12 +0.1
3,344,765 + Dsui_3123 0.15 -0.0
3,344,773 - Dsui_3123 0.15 +0.3
3,344,945 - Dsui_3123 0.29 +0.1
3,345,256 - Dsui_3123 0.53 +0.3
3,345,377 + Dsui_3123 0.62 +0.1
3,345,428 + Dsui_3123 0.66 -0.1
3,345,459 - Dsui_3123 0.68 +0.5
3,345,596 - Dsui_3123 0.79 +0.6
3,345,653 + Dsui_3123 0.83 -0.0
3,345,676 + Dsui_3123 0.85 +1.1
3,345,700 + Dsui_3123 0.87 +0.4
3,345,700 + Dsui_3123 0.87 +0.4
3,345,752 + +0.7
3,345,753 + -0.4
3,345,775 + -0.4
3,345,788 - -0.6
3,345,904 + +0.2
3,345,910 + +0.5
3,345,959 + Dsui_3124 0.20 -0.5
3,345,987 + Dsui_3124 0.27 -0.3
3,345,987 + Dsui_3124 0.27 -0.1
3,346,058 - Dsui_3124 0.46 -0.6
3,346,354 + +0.9
3,346,621 - Dsui_3125 0.13 +0.1
3,346,813 - Dsui_3125 0.25 +0.3
3,346,816 + Dsui_3125 0.25 -0.0
3,346,824 - Dsui_3125 0.26 -0.3
3,346,825 - Dsui_3125 0.26 -0.4
3,346,832 - Dsui_3125 0.26 -0.4
3,346,846 + Dsui_3125 0.27 -0.7

Or see this region's nucleotide sequence