Strain Fitness in Dechlorosoma suillum PS around Dsui_3035

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3034 and Dsui_3035 are separated by 116 nucleotidesDsui_3035 and Dsui_3036 are separated by 61 nucleotidesDsui_3036 and Dsui_3037 are separated by 85 nucleotides Dsui_3034: Dsui_3034 - ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent, at 3,246,823 to 3,249,732 _3034 Dsui_3035: Dsui_3035 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,249,849 to 3,251,012 _3035 Dsui_3036: Dsui_3036 - Zn-finger containing NTP pyrophosphohydrolase, at 3,251,074 to 3,251,643 _3036 Dsui_3037: Dsui_3037 - proton-translocating NADH-quinone oxidoreductase, chain N, at 3,251,729 to 3,253,207 _3037 Position (kb) 3249 3250 3251 3252Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 3248.880 kb on + strand, within Dsui_3034at 3248.888 kb on - strand, within Dsui_3034at 3248.909 kb on + strand, within Dsui_3034at 3248.917 kb on - strand, within Dsui_3034at 3248.917 kb on - strandat 3249.066 kb on + strand, within Dsui_3034at 3249.094 kb on + strand, within Dsui_3034at 3249.102 kb on - strand, within Dsui_3034at 3249.123 kb on + strand, within Dsui_3034at 3249.268 kb on - strand, within Dsui_3034at 3249.293 kb on - strand, within Dsui_3034at 3249.404 kb on + strand, within Dsui_3034at 3249.431 kb on + strand, within Dsui_3034at 3249.439 kb on + strand, within Dsui_3034at 3249.604 kb on + strandat 3249.728 kb on + strandat 3249.759 kb on + strandat 3249.798 kb on + strandat 3249.806 kb on - strandat 3249.984 kb on - strand, within Dsui_3035at 3250.014 kb on - strand, within Dsui_3035at 3250.061 kb on + strand, within Dsui_3035at 3250.061 kb on + strand, within Dsui_3035at 3250.120 kb on + strand, within Dsui_3035at 3250.338 kb on - strand, within Dsui_3035at 3250.376 kb on + strand, within Dsui_3035at 3250.457 kb on + strand, within Dsui_3035at 3250.476 kb on - strand, within Dsui_3035at 3250.487 kb on + strand, within Dsui_3035at 3250.649 kb on + strand, within Dsui_3035at 3250.649 kb on + strand, within Dsui_3035at 3250.657 kb on - strand, within Dsui_3035at 3250.741 kb on - strand, within Dsui_3035at 3250.851 kb on - strand, within Dsui_3035at 3251.026 kb on - strandat 3251.107 kb on + strandat 3251.142 kb on - strand, within Dsui_3036at 3251.199 kb on - strand, within Dsui_3036at 3251.246 kb on - strand, within Dsui_3036at 3251.306 kb on - strand, within Dsui_3036at 3251.494 kb on + strand, within Dsui_3036at 3251.520 kb on + strand, within Dsui_3036at 3251.550 kb on - strand, within Dsui_3036at 3251.576 kb on + strand, within Dsui_3036at 3251.584 kb on - strand, within Dsui_3036at 3251.591 kb on + strandat 3251.594 kb on - strandat 3251.657 kb on - strandat 3251.659 kb on + strandat 3251.703 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,248,880 + Dsui_3034 0.71 -4.5
3,248,888 - Dsui_3034 0.71 -4.1
3,248,909 + Dsui_3034 0.72 -3.8
3,248,917 - Dsui_3034 0.72 -3.3
3,248,917 - +0.9
3,249,066 + Dsui_3034 0.77 -5.0
3,249,094 + Dsui_3034 0.78 -5.2
3,249,102 - Dsui_3034 0.78 -1.7
3,249,123 + Dsui_3034 0.79 -6.5
3,249,268 - Dsui_3034 0.84 -1.8
3,249,293 - Dsui_3034 0.85 -2.1
3,249,404 + Dsui_3034 0.89 -4.8
3,249,431 + Dsui_3034 0.90 -4.9
3,249,439 + Dsui_3034 0.90 -5.3
3,249,604 + -4.2
3,249,728 + -0.0
3,249,759 + +0.1
3,249,798 + +0.0
3,249,806 - +0.0
3,249,984 - Dsui_3035 0.12 -0.1
3,250,014 - Dsui_3035 0.14 -0.7
3,250,061 + Dsui_3035 0.18 -0.2
3,250,061 + Dsui_3035 0.18 -0.5
3,250,120 + Dsui_3035 0.23 -0.0
3,250,338 - Dsui_3035 0.42 -0.3
3,250,376 + Dsui_3035 0.45 -0.5
3,250,457 + Dsui_3035 0.52 -0.0
3,250,476 - Dsui_3035 0.54 -0.1
3,250,487 + Dsui_3035 0.55 -0.0
3,250,649 + Dsui_3035 0.69 -0.1
3,250,649 + Dsui_3035 0.69 -0.1
3,250,657 - Dsui_3035 0.69 -0.9
3,250,741 - Dsui_3035 0.77 -0.4
3,250,851 - Dsui_3035 0.86 +0.4
3,251,026 - +0.1
3,251,107 + -0.1
3,251,142 - Dsui_3036 0.12 -0.1
3,251,199 - Dsui_3036 0.22 -0.1
3,251,246 - Dsui_3036 0.30 -0.4
3,251,306 - Dsui_3036 0.41 +0.0
3,251,494 + Dsui_3036 0.74 -1.8
3,251,520 + Dsui_3036 0.78 -0.2
3,251,550 - Dsui_3036 0.84 +0.2
3,251,576 + Dsui_3036 0.88 +0.0
3,251,584 - Dsui_3036 0.89 -0.5
3,251,591 + -0.3
3,251,594 - -0.1
3,251,657 - +0.1
3,251,659 + +0.0
3,251,703 - +0.2

Or see this region's nucleotide sequence