Strain Fitness in Dechlorosoma suillum PS around Dsui_2880

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2879 and Dsui_2880 are separated by 231 nucleotidesDsui_2880 and Dsui_2881 overlap by 4 nucleotides Dsui_2879: Dsui_2879 - methyl-accepting chemotaxis protein, at 3,074,009 to 3,075,505 _2879 Dsui_2880: Dsui_2880 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 3,075,737 to 3,077,080 _2880 Dsui_2881: Dsui_2881 - 8-amino-7-oxononanoate synthase, at 3,077,077 to 3,078,252 _2881 Position (kb) 3075 3076 3077 3078Strain fitness (log2 ratio) -2 -1 0 1 2at 3074.882 kb on - strand, within Dsui_2879at 3074.917 kb on - strand, within Dsui_2879at 3075.027 kb on + strandat 3075.048 kb on + strand, within Dsui_2879at 3075.062 kb on - strand, within Dsui_2879at 3075.149 kb on - strand, within Dsui_2879at 3075.149 kb on - strand, within Dsui_2879at 3075.305 kb on - strand, within Dsui_2879at 3075.399 kb on - strandat 3075.470 kb on - strandat 3075.526 kb on + strandat 3075.526 kb on + strandat 3075.528 kb on + strandat 3075.536 kb on - strandat 3075.656 kb on + strandat 3075.669 kb on + strandat 3075.687 kb on - strandat 3075.701 kb on + strandat 3075.720 kb on + strandat 3075.720 kb on - strandat 3075.733 kb on + strandat 3075.842 kb on + strandat 3075.858 kb on + strandat 3075.978 kb on - strand, within Dsui_2880at 3076.112 kb on + strand, within Dsui_2880at 3076.205 kb on - strandat 3076.245 kb on - strand, within Dsui_2880at 3076.264 kb on - strandat 3076.264 kb on - strand, within Dsui_2880at 3076.429 kb on + strand, within Dsui_2880at 3076.455 kb on + strand, within Dsui_2880at 3076.620 kb on - strandat 3076.629 kb on + strand, within Dsui_2880at 3076.641 kb on + strand, within Dsui_2880at 3076.649 kb on - strandat 3076.810 kb on + strand, within Dsui_2880at 3076.831 kb on + strand, within Dsui_2880at 3076.907 kb on - strandat 3076.954 kb on - strandat 3077.009 kb on - strandat 3077.111 kb on - strandat 3077.219 kb on + strand, within Dsui_2881at 3077.227 kb on - strandat 3077.724 kb on - strand, within Dsui_2881at 3077.838 kb on - strand, within Dsui_2881at 3077.869 kb on - strand, within Dsui_2881at 3077.915 kb on + strand, within Dsui_2881at 3078.077 kb on + strand, within Dsui_2881

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,074,882 - Dsui_2879 0.58 +0.8
3,074,917 - Dsui_2879 0.61 +0.6
3,075,027 + +1.9
3,075,048 + Dsui_2879 0.69 +0.8
3,075,062 - Dsui_2879 0.70 +0.0
3,075,149 - Dsui_2879 0.76 -1.1
3,075,149 - Dsui_2879 0.76 +0.0
3,075,305 - Dsui_2879 0.87 +0.9
3,075,399 - -0.7
3,075,470 - +0.3
3,075,526 + +1.9
3,075,526 + -1.1
3,075,528 + +1.4
3,075,536 - +0.0
3,075,656 + +0.1
3,075,669 + +0.5
3,075,687 - -1.9
3,075,701 + +0.2
3,075,720 + +0.0
3,075,720 - +0.8
3,075,733 + -0.5
3,075,842 + +0.3
3,075,858 + -1.5
3,075,978 - Dsui_2880 0.18 -0.8
3,076,112 + Dsui_2880 0.28 -1.0
3,076,205 - +0.4
3,076,245 - Dsui_2880 0.38 -0.2
3,076,264 - -1.2
3,076,264 - Dsui_2880 0.39 +0.8
3,076,429 + Dsui_2880 0.51 -0.1
3,076,455 + Dsui_2880 0.53 +0.3
3,076,620 - +1.9
3,076,629 + Dsui_2880 0.66 +0.1
3,076,641 + Dsui_2880 0.67 +0.4
3,076,649 - +1.4
3,076,810 + Dsui_2880 0.80 +0.4
3,076,831 + Dsui_2880 0.81 +0.5
3,076,907 - -0.1
3,076,954 - +0.6
3,077,009 - +0.5
3,077,111 - +0.9
3,077,219 + Dsui_2881 0.12 +0.1
3,077,227 - +1.9
3,077,724 - Dsui_2881 0.55 -0.7
3,077,838 - Dsui_2881 0.65 -2.0
3,077,869 - Dsui_2881 0.67 +1.3
3,077,915 + Dsui_2881 0.71 -1.1
3,078,077 + Dsui_2881 0.85 -0.1

Or see this region's nucleotide sequence