Strain Fitness in Dechlorosoma suillum PS around Dsui_2879

Experiment: Anaero. lactate (C), nitrate electron acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2878 and Dsui_2879 are separated by 318 nucleotidesDsui_2879 and Dsui_2880 are separated by 231 nucleotides Dsui_2878: Dsui_2878 - ABC-type antimicrobial peptide transport system, permease component, at 3,072,470 to 3,073,690 _2878 Dsui_2879: Dsui_2879 - methyl-accepting chemotaxis protein, at 3,074,009 to 3,075,505 _2879 Dsui_2880: Dsui_2880 - adenosylmethionine-8-amino-7-oxononanoate transaminase, at 3,075,737 to 3,077,080 _2880 Position (kb) 3074 3075 3076Strain fitness (log2 ratio) -2 -1 0 1 2at 3073.085 kb on + strand, within Dsui_2878at 3073.228 kb on - strand, within Dsui_2878at 3073.417 kb on + strand, within Dsui_2878at 3073.514 kb on - strand, within Dsui_2878at 3073.715 kb on - strandat 3073.716 kb on + strandat 3073.729 kb on + strandat 3073.764 kb on + strandat 3073.805 kb on - strandat 3073.821 kb on + strandat 3073.829 kb on - strandat 3074.155 kb on - strandat 3074.588 kb on + strand, within Dsui_2879at 3074.685 kb on + strandat 3074.734 kb on + strand, within Dsui_2879at 3074.882 kb on - strand, within Dsui_2879at 3074.917 kb on - strand, within Dsui_2879at 3075.027 kb on + strandat 3075.048 kb on + strand, within Dsui_2879at 3075.062 kb on - strand, within Dsui_2879at 3075.149 kb on - strand, within Dsui_2879at 3075.149 kb on - strand, within Dsui_2879at 3075.305 kb on - strand, within Dsui_2879at 3075.399 kb on - strandat 3075.470 kb on - strandat 3075.526 kb on + strandat 3075.526 kb on + strandat 3075.528 kb on + strandat 3075.536 kb on - strandat 3075.656 kb on + strandat 3075.669 kb on + strandat 3075.687 kb on - strandat 3075.701 kb on + strandat 3075.720 kb on + strandat 3075.720 kb on - strandat 3075.733 kb on + strandat 3075.842 kb on + strandat 3075.858 kb on + strandat 3075.978 kb on - strand, within Dsui_2880at 3076.112 kb on + strand, within Dsui_2880at 3076.205 kb on - strandat 3076.245 kb on - strand, within Dsui_2880at 3076.264 kb on - strandat 3076.264 kb on - strand, within Dsui_2880at 3076.429 kb on + strand, within Dsui_2880at 3076.455 kb on + strand, within Dsui_2880

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. lactate (C), nitrate electron acceptor
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3,073,085 + Dsui_2878 0.50 +0.4
3,073,228 - Dsui_2878 0.62 -1.8
3,073,417 + Dsui_2878 0.78 -0.9
3,073,514 - Dsui_2878 0.86 +0.0
3,073,715 - -1.6
3,073,716 + -0.1
3,073,729 + -0.8
3,073,764 + -0.5
3,073,805 - +0.1
3,073,821 + +0.4
3,073,829 - +0.5
3,074,155 - +0.0
3,074,588 + Dsui_2879 0.39 +0.2
3,074,685 + +1.5
3,074,734 + Dsui_2879 0.48 +0.5
3,074,882 - Dsui_2879 0.58 +0.8
3,074,917 - Dsui_2879 0.61 +0.6
3,075,027 + +1.9
3,075,048 + Dsui_2879 0.69 +0.8
3,075,062 - Dsui_2879 0.70 +0.0
3,075,149 - Dsui_2879 0.76 -1.1
3,075,149 - Dsui_2879 0.76 +0.0
3,075,305 - Dsui_2879 0.87 +0.9
3,075,399 - -0.7
3,075,470 - +0.3
3,075,526 + +1.9
3,075,526 + -1.1
3,075,528 + +1.4
3,075,536 - +0.0
3,075,656 + +0.1
3,075,669 + +0.5
3,075,687 - -1.9
3,075,701 + +0.2
3,075,720 + +0.0
3,075,720 - +0.8
3,075,733 + -0.5
3,075,842 + +0.3
3,075,858 + -1.5
3,075,978 - Dsui_2880 0.18 -0.8
3,076,112 + Dsui_2880 0.28 -1.0
3,076,205 - +0.4
3,076,245 - Dsui_2880 0.38 -0.2
3,076,264 - -1.2
3,076,264 - Dsui_2880 0.39 +0.8
3,076,429 + Dsui_2880 0.51 -0.1
3,076,455 + Dsui_2880 0.53 +0.3

Or see this region's nucleotide sequence